Vfaba.Tiffany.R1.3g060240.1

Transcript Overview
NameVfaba.Tiffany.R1.3g060240.1
Unique NameVfaba.Tiffany.R1.3g060240.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length738
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:417563625..417564362 -Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR302Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR340Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
astifL375Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL403Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL413Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifL203Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL289Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL316Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cctifL0118Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL064Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cctifL0607Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL344Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvtifL030Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tiftifL186Vicia faba cv. Tiffany genome v1.0Vicia faba
tiftifL187Vicia faba cv. Tiffany genome v1.0Vicia faba
tiftifR204Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL586Pisum sativum Cameor genome v1aPisum sativum
pstifL656Pisum sativum Cameor genome v1aPisum sativum
pvtifL642Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhR220Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR347Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR402Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhR230Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR235Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR439Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caitifL242Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL350Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL432Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0669Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0675Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvrvR339Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR388Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR427Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvuaR300Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR337Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR366Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR379Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR403Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR407Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR414Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR435Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL165Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL230Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL261Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL275Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g060240Vfaba.Tiffany.R1.3g060240_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g060240.1_tif_v1-exonVfaba.Tiffany.R1.3g060240.1_tif_v1-exon-chr3_tif_v1:417563625..417564362Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g060240.1_tif_v1-cdsVfaba.Tiffany.R1.3g060240.1_tif_v1-cds-chr3_tif_v1:417563625..417564362Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g060240.1_tif_v1Vfaba.Tiffany.R1.3g060240.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.3g060240.1_tif_v1Vfaba.Tiffany.R1.3g060240.1_tif_v1-proteinVicia fabapolypeptide


Homology
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BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NJV9|A0A2Z6NJV9_TRISU (tRNA-intron lyase OS=Trifolium subterraneum OX=3900 GN=TSUD_331750 PE=3 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 1.631e-153
Identity = 208/245 (84.90%), Postives = 223/245 (91.02%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAEAEAL+EPMS I+SQLQSSLVQSN CGSLSD+ VH+AVQAEQLDLLDKA FG+PVR V KDMYWFQLTLEEAFYLCY LKCLKIN GADT P NDE+LWH F SKK+AF  +YKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVL+ S D+ DDD+NGRLRVWSDV C+TRLLGSVAKTLLVLY+NKNGHSD SPL L NY +EERTISRWSPEQCRERS+
Sbjct:    1 MAPRWKGKDAKSKKDAEAEALREPMSTIISQLQSSLVQSNTCGSLSDNCVHLAVQAEQLDLLDKACFGRPVRTVEKDMYWFQLTLEEAFYLCYFLKCLKINGGADTGPSNDEQLWHYFKSKKEAFPCFYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLILSHDS-DDDLNGRLRVWSDVHCSTRLLGSVAKTLLVLYINKNGHSDESPLCLANYTIEERTISRWSPEQCRERSI 244
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YDL4|A0A3Q7YDL4_CICAR (tRNA-intron lyase OS=Cicer arietinum OX=3827 GN=LOC101495092 PE=3 SV=1)

HSP 1 Score: 432.565 bits (1111), Expect = 3.000e-152
Identity = 204/239 (85.36%), Postives = 218/239 (91.21%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQ 239
            MAPRWKGKDAKSKKDAEAEALKEPMSKI+SQL +SLV SN CG L D+SVH+AVQAEQLDLLDKA FG+PVR+V KDMYWFQL+LEEAFYLCYSLKCLKIN G+DT P NDEELWHCF SKK+AF F+YKAYSHLRMKNWVVRSGAQYGVD IVYRHHPARVHSEYGVLV S +N DDD+NGRLRVWSDV CTTRLLGSVAKTLLVLY+NKNGHSD SP  LENY +EERTISRWSPEQ
Sbjct:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIISQLHTSLVLSNTCGFLCDNSVHLAVQAEQLDLLDKACFGRPVRSVEKDMYWFQLSLEEAFYLCYSLKCLKINGGSDTGPSNDEELWHCFKSKKEAFPFFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGVLVLSHENVDDDINGRLRVWSDVHCTTRLLGSVAKTLLVLYINKNGHSDESPSCLENYTIEERTISRWSPEQ 239
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PPX2|A0A2K3PPX2_TRIPR (tRNA-intron lyase OS=Trifolium pratense OX=57577 GN=L195_g014083 PE=3 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 6.765e-149
Identity = 204/245 (83.27%), Postives = 219/245 (89.39%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAEAEAL+EPMS I+SQLQSSLVQSN CG LSD+ VH+AVQAEQLDLLDK+ FG+PVR V KDMYWFQLTLEEAFYLCY LKCLKIN GADT P NDE+LW  F SKK+AF  +YKAYSHLRMKNWVVRSGAQYGVDFI+YRHHPARVHSEYGVLV S DNDDD  NGRLRVWSDV C+TRLLGSVAKTLLVLY+NKNG +D SPL L NY +EERTISRWSPEQCRERS+
Sbjct:   54 MAPRWKGKDAKSKKDAEAEALREPMSMIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLDLLDKSCFGRPVRTVEKDMYWFQLTLEEAFYLCYFLKCLKINGGADTGPSNDEQLWRYFKSKKEAFPCFYKAYSHLRMKNWVVRSGAQYGVDFIIYRHHPARVHSEYGVLVLSHDNDDDP-NGRLRVWSDVHCSTRLLGSVAKTLLVLYINKNGQNDESPLCLANYTIEERTISRWSPEQCRERSV 297
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A2Q3E8|A2Q3E8_MEDTR (tRNA-splicing endonuclease subunit Sen2 OS=Medicago truncatula OX=3880 GN=11414349 PE=3 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 1.333e-147
Identity = 206/247 (83.40%), Postives = 219/247 (88.66%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCL--KINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRERSL 245
            MAPRWKGKDAKSKK+AEAEALKEPMSKI+SQLQSSLVQSN CG LSD+ VH+ VQAEQLDLLDKA FG+PVR V KDMYWFQLT+EEAFYLCYSLKCL  KIN GADT PLNDEELWH F SKK+ F ++YKAYSHLRMKNWVVRSGAQYGVD IVYRHHPARVHSEYGVLV S D  D D+NGRLRVWSDV CTTRLLG VAKTLLVLYVNKNG++D S L L NY VEERTISRWSPEQCRERS+
Sbjct:    1 MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLTVQAEQLDLLDKACFGRPVRIVEKDMYWFQLTVEEAFYLCYSLKCLKIKINVGADTGPLNDEELWHYFRSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGVLVLSHDK-DGDLNGRLRVWSDVHCTTRLLGGVAKTLLVLYVNKNGNNDESLLCLTNYTVEERTISRWSPEQCRERSI 246
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NPD0|A0A2Z6NPD0_TRISU (tRNA-intron lyase OS=Trifolium subterraneum OX=3900 GN=TSUD_190950 PE=3 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 5.966e-145
Identity = 205/246 (83.33%), Postives = 216/246 (87.80%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKIN-RGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAE EALKEPMS I+SQLQSSLVQSN CG LSD+ VH+AVQ EQLDLL+KA FG+PVR V KD+YWFQLTLEEAFYLCY LKCLKIN  GAD SPLNDEELW  F SKK+A   +YKAYSHLR KNWVV SGAQYGVDFIVYRHHPARVHSEYGVLV S DN DDD+NGRLRVWSDV C+TRLLGSVAKTLLVLYVNKNGHSD SPL L NY +EERTISRWS EQCRERSL
Sbjct:    1 MAPRWKGKDAKSKKDAEVEALKEPMSNIISQLQSSLVQSNTCGFLSDNCVHLAVQGEQLDLLEKACFGRPVRIVEKDIYWFQLTLEEAFYLCYFLKCLKINGGGADDSPLNDEELWRYFKSKKEALPCFYKAYSHLRSKNWVVMSGAQYGVDFIVYRHHPARVHSEYGVLVLSHDN-DDDLNGRLRVWSDVHCSTRLLGSVAKTLLVLYVNKNGHSDESPLCLANYTIEERTISRWSSEQCRERSL 245
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N3Y5|A0A2K3N3Y5_TRIPR (tRNA-intron lyase OS=Trifolium pratense OX=57577 GN=L195_g021005 PE=3 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 1.734e-143
Identity = 199/245 (81.22%), Postives = 216/245 (88.16%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRERSL 245
            MAPRWKGKDAKSKKDAEAEAL+EPMSKI+SQLQSS VQSN CG LSD+ VH+AVQ EQLDLLDKA FG+PVR V KDMYWFQLTLEEAFYLCY LKCL+IN  AD SPL++EELW  F SKK+AF  +YKAYSHLR+KNWVVRSGAQYGVDFIVYRHHPA VHSEYGVLV S DN D D+NGRLRVWSD  C+TRLLGSVAKTLLVLY+NKNG +D SPL L NY +EERTISRWSPEQCRERS+
Sbjct:    1 MAPRWKGKDAKSKKDAEAEALREPMSKIISQLQSSFVQSNTCGFLSDNCVHLAVQGEQLDLLDKACFGRPVRIVEKDMYWFQLTLEEAFYLCYFLKCLEINGRADDSPLSNEELWRYFKSKKEAFPCFYKAYSHLRIKNWVVRSGAQYGVDFIVYRHHPALVHSEYGVLVLSHDN-DADLNGRLRVWSDXHCSTRLLGSVAKTLLVLYINKNGQNDESPLCLANYTIEERTISRWSPEQCRERSV 244
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|V7CYA6|V7CYA6_PHAVU (tRNA-intron lyase OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G138100g PE=3 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 5.927e-130
Identity = 183/243 (75.31%), Postives = 210/243 (86.42%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRER 243
            MAPRWKGKDA++KKDAEAEALKEPMSKIVSQL+SSLVQS+ CG LSD+SV +AV  EQLDLLDKA FG+PVR + KD +WFQL+ EEAFYLCYSLKCLKIN G+ T P NDEELWH   SKK+ F  +YKAYSHLRMKNWVVRSG+QYGVDF++YRHHP+RVHSEYGVLV S D +D D+NGRLRVWSD+ CTTRL+GSVAK LLVL+VNK G+++ SPL L NY VEE TI+RWSPEQ RE+
Sbjct:   91 MAPRWKGKDAQAKKDAEAEALKEPMSKIVSQLKSSLVQSDTCGLLSDNSVQLAVGVEQLDLLDKACFGRPVRTIEKDKHWFQLSFEEAFYLCYSLKCLKIN-GSGTGPQNDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGSQYGVDFVIYRHHPSRVHSEYGVLVLS-DGEDKDLNGRLRVWSDIHCTTRLVGSVAKILLVLHVNKIGNNNESPLCLANYTVEECTITRWSPEQNREK 331
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|C6T7C2|C6T7C2_SOYBN (tRNA-intron lyase OS=Glycine max OX=3847 GN=100810335 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 8.839e-121
Identity = 189/244 (77.46%), Postives = 205/244 (84.02%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGA-DTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRER 243
            MAPRWKGKDAK+KKDA+AEALKEPMSKIVSQLQSSLVQSN CG LS SSVH+AV AEQL LLDKA FG PVR V KD   FQL+ EEAFYLCYSLKCLKIN  + DTSP N EELWH   SKK+ F  +YKAYSHLRMKNWVVRSGAQYG DF+VY HHPARVHSEYGVLV S D +D D+NGRLRVWSDV CTTRLLG VAK LLVLYVN+NG S+ SPL L NY +EE TI+RW+PEQCRE+
Sbjct:    1 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQLQSSLVQSNTCGFLSGSSVHLAVGAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSPQNSEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYCHHPARVHSEYGVLVLS-DGEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGSSNESPLCLANYTIEEHTITRWNPEQCREK 243
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PWL1|A0A0B2PWL1_GLYSO (tRNA-intron lyase OS=Glycine soja OX=3848 GN=D0Y65_026266 PE=3 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 8.839e-121
Identity = 189/244 (77.46%), Postives = 205/244 (84.02%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGA-DTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRER 243
            MAPRWKGKDAK+KKDA+AEALKEPMSKIVSQLQSSLVQSN CG LS SSVH+AV AEQL LLDKA FG PVR V KD   FQL+ EEAFYLCYSLKCLKIN  + DTSP N EELWH   SKK+ F  +YKAYSHLRMKNWVVRSGAQYG DF+VY HHPARVHSEYGVLV S D +D D+NGRLRVWSDV CTTRLLG VAK LLVLYVN+NG S+ SPL L NY +EE TI+RW+PEQCRE+
Sbjct:    1 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQLQSSLVQSNTCGFLSGSSVHLAVGAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSPQNSEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYCHHPARVHSEYGVLVLS-DGEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGSSNESPLCLANYTIEEHTITRWNPEQCREK 243
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Match: tr|I1JXC8|I1JXC8_SOYBN (tRNA-intron lyase OS=Glycine max OX=3847 GN=100807021 PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 9.799e-119
Identity = 187/244 (76.64%), Postives = 205/244 (84.02%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGA-DTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRER 243
            MAPRWKGKDAK+KKDA+AEALKEPMSKIVSQ+QSSLVQS+  G LS SSVH+ V+AEQL LLDKA FG PVR V KD   FQL+ EEAFYLCYSLKCLKIN  + DTS   DEELWH   SKK+ F  +YKAYSHLRMKNWVVRSGAQYG DF+VYRHHPARVHSEYGVLV S D +D D+NGRLRVWSDV CTTRLLG VAK LLVLYVN+NG S+ SPL L NY VEERTI+RW+PEQCRE+
Sbjct:    1 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLS-DEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREK 243
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M1E8|SEN21_ARATH (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 6.083e-85
Identity = 136/244 (55.74%), Postives = 169/244 (69.26%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNK--NGHSDGSPLYLENYAVEERTISRWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+L+SSL Q+ A G LS  +V ++V++E+ +LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI      S  N+ +LW   +S KQ F+  YKAYSHLR KNW+VRSG QYGVDF+VYRHHP+ VHSEY VLV+S   +D     RL+VWSD+ C+ RL GSVAK+LLVLYVN+  N      PL LE+Y VEE+TI RWSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHG-RSLENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LSS3|SEN22_ARATH (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.018e-81
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY--LENYAVEERTISRWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+LQ SL ++ + G+LS  +V +AV+ EQ +LLD+  FG+ V +  K   W QL+ EEAF+L Y+LKC+KI+        N+ + W    SK+  F  ++KAYSHLR KNWV+RSG QYGVDF+ YRHHP+ VHSEY VLV+S D+D      RLRVWSD+ C  RL GSVAKTLL LYVN N   +   L   LEN+ VEE+TISRWSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLE-NEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD------RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 231
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5Z6B1|SEN2_ORYSJ (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.613e-68
Identity = 115/246 (46.75%), Postives = 153/246 (62.20%), Query Frame = 0 
Query:    2 APRWK-GKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSD--SSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYV-NKNGHSDGSPLYLENYAVEERTISRWSPEQCRER 243
             PRWK GKD K   D  + A   PMS IVS+L++S + S     LS    S  + V  EQ  +L++A FG  + N     +WFQL+ EE FYLC++L C++++   D   +++ ELW  F S  ++F   YKAY+HLR+KNWVVRSG QYG DF+ YRHHPA VHSE+ V+V  +  +  +  GRL VWSD+ C  R  GSVAKTLLVL + + +     SP  LE   V ERTI+RW  +QCRE+
Sbjct:    5 GPRWKKGKDGK---DFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVILNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVD-SLDNKQMSEIELWDYFRSGSESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCGRLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCREQ 246
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6P7W5|SEN2_MOUSE (tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus OX=10090 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.747e-24
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 0 
Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDG----SPLYLENYAVEERTISRWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL I    +  PL   +LW  F + +  F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V++   +  DD+  G LR    W  +   +R+ G+V+K L++ Y+ K          +P  ++   V+E  +SRW     RERS
Sbjct:  283 RNPYRIFEYLQLSLEEAFFLAYALGCLSIY--YEKEPLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVII---ELLDDNYEGSLRRPFSWKSLAALSRVSGNVSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWV--SSRERS 455
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5M954|SEN2_RAT (tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus OX=10116 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.533e-24
Identity = 61/180 (33.89%), Postives = 92/180 (51.11%), Query Frame = 0 
Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDG----SPLYLENYAVEERTISRWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL I    +  PL   +LW  F + +  F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V++   +  DD+  G LR    W  +   +R+ G+V+K L++ Y+ K          +P  +    V+E  +SRW     RERS
Sbjct:  286 RNPYRIFEYLQLSLEEAFFLAYALGCLSIY--YEKEPLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVII---ELVDDNFEGSLRRPFSWKSLAALSRVSGNVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWV--SSRERS 458
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5ZIN2|SEN2_CHICK (tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus OX=9031 GN=TSEN2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.495e-22
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 0 
Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNKNG----HSDGSPLYLENYAVEERTISRWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL +  G +  PL   +LW  F+  K +F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V+    +  DD+  G LR    W  +    R   + +K LL+ Y+ K          +P  L+   V+E  ++RW     RERS
Sbjct:  284 RNPFRIFEYLQLSLEEAFFLVYALGCLTVYYGEE--PLTILKLWEIFSEVKPSFKTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIA---ELVDDNFEGSLRRPLSWMSLSGLNRTTVNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRWV--SSRERS 456
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8NCE0|SEN2_HUMAN (tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens OX=9606 GN=TSEN2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.415e-21
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 0 
Query:   72 RNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLR---VWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDG----SPLYLENYAVEERTISRWSPEQCRERS 244
            RN  +   + QL+LEEAF+L Y+L CL I    +  PL   +LW  F   +  F   Y AY + R K WV + G +YG D ++YR  P   H+ Y V++   +  DD   G LR    W  +   +R+  +V+K L++ Y+ K          SP  ++   V+E  +SRW     RERS
Sbjct:  288 RNPYRIFEYLQLSLEEAFFLVYALGCLSIY--YEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVII---ELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWV--SSRERS 460
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9P6Y2|SEN2_NEUCR (Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tsp-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-13
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 0 
Query:   77 DMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFN-------------SKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDND----DDDVNGRLRVWSDVQCTTRLLGSVAKTL 204
            D   FQL  EEAF+L + L  L++      +P+++E+L                  S +  F   Y  Y H R   WV R G ++GVD+I+Y+  P   HSE+G++V    +D    + +     + WS +    R+L  V K+L
Sbjct:  444 DKEHFQLAPEEAFFLTFGLGALRVVDPVTEAPISNEQLLIKLRANSYFPPRSVDNLSPEDPFLVQYAVYHHFRSLGWVPRHGIKFGVDWIIYQRGPVFDHSEFGIMVVPSFSDPRWSEFEHEESKKTWSWLMGVNRVLSHVLKSL 588
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q74ZY5|SEN2_ASHGO (tRNA-splicing endonuclease subunit SEN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEN2 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.918e-11
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 0 
Query:  129 YKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDG------SPLYLENYA---VEERTISRWSPEQCRE 242
            Y AY H R   W VRSG ++G DF++YR  P   H+E+ V+V + D   D        ++      R++G   KTL++ YV +   +D       +  Y+E +A   V E    RW P + RE
Sbjct:  242 YAAYHHYRSHGWCVRSGIKFGCDFLLYRRGPPFHHAEFSVMVLAPDERHD--------YTWYSTVARVVGGAQKTLVLAYVARRAAADQLAALWHARRYMEAFALFEVHELVYRRWLPGKNRE 356
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8TFH7|SEN2_SCHPO (Probable tRNA-splicing endonuclease subunit sen2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.054e-11
Identity = 50/199 (25.13%), Postives = 86/199 (43.22%), Query Frame = 0 
Query:   81 FQLTLEEAFYLCYSLKCLKIN---RGADTSPL---------NDEELWHCFNSKK----------QAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY---------------LENYAVEERTISRWSPEQCRE 242
             QLT  EAF+L  SL  L+IN      +  P+         N   L H ++ ++            F     AY + R + WVV++G ++ VDF++Y+  P   H+E+ +L+     +    N +   W +V C  R++  V K+L++ YV      D + ++               L  Y +   T+ RW P + R+
Sbjct:  186 LQLTFPEAFFLA-SLGVLRINYENPNFELLPILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQ---WHEVHCLNRVIAQVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVLRQYLIRCVTLRRWVPSRNRD 380
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. Araport11
Match: AT3G45590.2 (| splicing endonuclease 1 | Chr3:16733062-16733775 FORWARD LENGTH=237 | 201606)

HSP 1 Score: 255.758 bits (652), Expect = 6.223e-86
Identity = 136/244 (55.74%), Postives = 169/244 (69.26%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNK--NGHSDGSPLYLENYAVEERTISRWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+L+SSL Q+ A G LS  +V ++V++E+ +LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI      S  N+ +LW   +S KQ F+  YKAYSHLR KNW+VRSG QYGVDF+VYRHHP+ VHSEY VLV+S   +D     RL+VWSD+ C+ RL GSVAK+LLVLYVN+  N      PL LE+Y VEE+TI RWSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHG-RSLENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. Araport11
Match: AT3G45590.1 (| splicing endonuclease 1 | Chr3:16733062-16733775 FORWARD LENGTH=237 | 201606)

HSP 1 Score: 255.758 bits (652), Expect = 6.223e-86
Identity = 136/244 (55.74%), Postives = 169/244 (69.26%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNK--NGHSDGSPLYLENYAVEERTISRWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+L+SSL Q+ A G LS  +V ++V++E+ +LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI      S  N+ +LW   +S KQ F+  YKAYSHLR KNW+VRSG QYGVDF+VYRHHP+ VHSEY VLV+S   +D     RL+VWSD+ C+ RL GSVAK+LLVLYVN+  N      PL LE+Y VEE+TI RWSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHG-RSLENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRE 232
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. Araport11
Match: AT5G60230.1 (| splicing endonuclease 2 | Chr5:24250185-24250937 REVERSE LENGTH=250 | 201606)

HSP 1 Score: 246.128 bits (627), Expect = 6.157e-82
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY--LENYAVEERTISRWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+LQ SL ++ + G+LS  +V +AV+ EQ +LLD+  FG+ V +  K   W QL+ EEAF+L Y+LKC+KI+        N+ + W    SK+  F  ++KAYSHLR KNWV+RSG QYGVDF+ YRHHP+ VHSEY VLV+S D+D      RLRVWSD+ C  RL GSVAKTLL LYVN N   +   L   LEN+ VEE+TISRWSPE  RE
Sbjct:    1 MAPRWKWKGA------EAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLE-NEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD------RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 231
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. Araport11
Match: AT5G60230.2 (| splicing endonuclease 2 | Chr5:24250185-24250952 REVERSE LENGTH=255 | 201606)

HSP 1 Score: 246.128 bits (627), Expect = 6.493e-82
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 0 
Query:    1 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHSDGSPLY--LENYAVEERTISRWSPEQCRE 242
            MAPRWK K A      EA+AL EP+SK VS+LQ SL ++ + G+LS  +V +AV+ EQ +LLD+  FG+ V +  K   W QL+ EEAF+L Y+LKC+KI+        N+ + W    SK+  F  ++KAYSHLR KNWV+RSG QYGVDF+ YRHHP+ VHSEY VLV+S D+D      RLRVWSD+ C  RL GSVAKTLL LYVN N   +   L   LEN+ VEE+TISRWSPE  RE
Sbjct:    6 MAPRWKWKGA------EAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLE-NEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD------RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRE 236
[Close]
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. Araport11
Match: AT3G45577.1 (| tRNA-intron endonuclease | Chr3:16728910-16729266 FORWARD LENGTH=118 | 201606)

HSP 1 Score: 78.1814 bits (191), Expect = 3.570e-18
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 0 
Query:   41 ACGSLSDSSVHIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKINRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKN 139
            A G LS  +V ++ QAE   LLD+  FG+ V    KD  W QL+ EEAF+L Y LKC+KI+     S +N  +LW    S K  F+  YKAYSHLR KN
Sbjct:   24 ALGFLSSCNVFLSEQAE---LLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGR-SLVNGVDLWRSIRSFKPNFTILYKAYSHLRSKN 118
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6NJV9|A0A2Z6NJV9_TRISU1.631e-15384.90tRNA-intron lyase OS=Trifolium subterraneum OX=390... [more]
tr|A0A3Q7YDL4|A0A3Q7YDL4_CICAR3.000e-15285.36tRNA-intron lyase OS=Cicer arietinum OX=3827 GN=LO... [more]
tr|A0A2K3PPX2|A0A2K3PPX2_TRIPR6.765e-14983.27tRNA-intron lyase OS=Trifolium pratense OX=57577 G... [more]
tr|A2Q3E8|A2Q3E8_MEDTR1.333e-14783.40tRNA-splicing endonuclease subunit Sen2 OS=Medicag... [more]
tr|A0A2Z6NPD0|A0A2Z6NPD0_TRISU5.966e-14583.33tRNA-intron lyase OS=Trifolium subterraneum OX=390... [more]
tr|A0A2K3N3Y5|A0A2K3N3Y5_TRIPR1.734e-14381.22tRNA-intron lyase OS=Trifolium pratense OX=57577 G... [more]
tr|V7CYA6|V7CYA6_PHAVU5.927e-13075.31tRNA-intron lyase OS=Phaseolus vulgaris OX=3885 GN... [more]
tr|C6T7C2|C6T7C2_SOYBN8.839e-12177.46tRNA-intron lyase OS=Glycine max OX=3847 GN=100810... [more]
tr|A0A0B2PWL1|A0A0B2PWL1_GLYSO8.839e-12177.46tRNA-intron lyase OS=Glycine soja OX=3848 GN=D0Y65... [more]
tr|I1JXC8|I1JXC8_SOYBN9.799e-11976.64tRNA-intron lyase OS=Glycine max OX=3847 GN=100807... [more]
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BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9M1E8|SEN21_ARATH6.083e-8555.74tRNA-splicing endonuclease subunit Sen2-1 OS=Arabi... [more]
sp|Q9LSS3|SEN22_ARATH6.018e-8154.10tRNA-splicing endonuclease subunit Sen2-2 OS=Arabi... [more]
sp|Q5Z6B1|SEN2_ORYSJ2.613e-6846.75Probable tRNA-splicing endonuclease subunit Sen2 O... [more]
sp|Q6P7W5|SEN2_MOUSE5.747e-2433.89tRNA-splicing endonuclease subunit Sen2 OS=Mus mus... [more]
sp|Q5M954|SEN2_RAT8.533e-2433.89tRNA-splicing endonuclease subunit Sen2 OS=Rattus ... [more]
sp|Q5ZIN2|SEN2_CHICK2.495e-2233.89tRNA-splicing endonuclease subunit Sen2 OS=Gallus ... [more]
sp|Q8NCE0|SEN2_HUMAN1.415e-2133.89tRNA-splicing endonuclease subunit Sen2 OS=Homo sa... [more]
sp|Q9P6Y2|SEN2_NEUCR1.169e-1329.66Probable tRNA-splicing endonuclease subunit tsp-2 ... [more]
sp|Q74ZY5|SEN2_ASHGO1.918e-1132.52tRNA-splicing endonuclease subunit SEN2 OS=Ashbya ... [more]
sp|Q8TFH7|SEN2_SCHPO4.054e-1125.13Probable tRNA-splicing endonuclease subunit sen2 O... [more]
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BLAST of Vfaba.Tiffany.R1.3g060240.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G45590.26.223e-8655.74| splicing endonuclease 1 | Chr3:16733062-16733775... [more]
AT3G45590.16.223e-8655.74| splicing endonuclease 1 | Chr3:16733062-16733775... [more]
AT5G60230.16.157e-8254.10| splicing endonuclease 2 | Chr5:24250185-24250937... [more]
AT5G60230.26.493e-8254.10| splicing endonuclease 2 | Chr5:24250185-24250952... [more]
AT3G45577.13.570e-1847.47| tRNA-intron endonuclease | Chr3:16728910-1672926... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1170.20coord: 33..121
e-value: 6.4E-6
score: 27.7
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 125..213
e-value: 4.7E-20
score: 71.4
IPR006677tRNA intron endonuclease, catalytic domain-likeCDDcd22363tRNA-intron_lyase_Ccoord: 129..213
e-value: 1.76666E-21
score: 83.6893
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 124..221
e-value: 2.4E-23
score: 83.9
IPR006678tRNA intron endonuclease, N-terminalPFAMPF02778tRNA_int_endo_Ncoord: 43..115
e-value: 4.4E-12
score: 45.5
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 3..74
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 125..213

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.3g060240.1_tif_v1 ID=Vfaba.Tiffany.R1.3g060240.1_tif_v1; Name=Vfaba.Tiffany.R1.3g060240.1; organism=Vicia faba; type=mRNA; length=738bp
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAATCGAAAAAGGATGCAGA
GGCTGAGGCACTTAAAGAACCCATGTCAAAGATTGTATCGCAACTTCAGT
CTTCTTTAGTTCAATCAAATGCTTGTGGATCTCTCTCTGATAGTTCTGTC
CACATAGCAGTGCAAGCTGAACAACTTGACCTGCTTGATAAAGCATACTT
TGGTCAACCTGTGAGAAATGTTGCAAAAGACATGTACTGGTTTCAATTAA
CCTTGGAGGAAGCATTCTACCTATGTTATTCCTTGAAATGCCTCAAGATT
AATCGTGGTGCTGATACTAGTCCCTTGAATGATGAAGAGTTGTGGCATTG
CTTCAACTCCAAGAAACAAGCATTCTCTTTTTACTACAAGGCTTATTCTC
ACCTTCGAATGAAAAACTGGGTTGTAAGGTCAGGGGCTCAGTATGGTGTA
GACTTCATTGTCTATCGTCATCATCCTGCACGGGTCCATTCTGAGTATGG
TGTACTTGTTCGATCACAGGATAATGATGATGATGATGTAAATGGAAGAT
TGAGAGTATGGTCTGATGTTCAATGCACTACTCGACTTCTTGGAAGTGTT
GCAAAAACCTTATTAGTTTTGTATGTTAACAAAAATGGTCACAGTGACGG
GTCTCCGTTATATTTGGAAAACTATGCTGTTGAAGAGCGCACGATCTCTA
GATGGAGTCCTGAACAATGTCGTGAAAGATCCTTATAG
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protein sequence of Vfaba.Tiffany.R1.3g060240.1_tif_v1

>Vfaba.Tiffany.R1.3g060240.1_tif_v1 ID=Vfaba.Tiffany.R1.3g060240.1_tif_v1; Name=Vfaba.Tiffany.R1.3g060240.1_tif_v1; organism=Vicia faba; type=polypeptide; length=245bp
MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLVQSNACGSLSDSSV
HIAVQAEQLDLLDKAYFGQPVRNVAKDMYWFQLTLEEAFYLCYSLKCLKI
NRGADTSPLNDEELWHCFNSKKQAFSFYYKAYSHLRMKNWVVRSGAQYGV
DFIVYRHHPARVHSEYGVLVRSQDNDDDDVNGRLRVWSDVQCTTRLLGSV
AKTLLVLYVNKNGHSDGSPLYLENYAVEERTISRWSPEQCRERSL
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mRNA from alignment at chr3:417563625..417564362-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.3g060240.1_tif_v1 ID=Vfaba.Tiffany.R1.3g060240.1_tif_v1; Name=Vfaba.Tiffany.R1.3g060240.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:417563625..417564362- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR006678tRNA_intron_Endonuc_N
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
GO:0003676nucleic acid binding