Vfaba.Tiffany.R1.4g159880.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|I3T3B9|I3T3B9_LOTJA (Mediator of RNA polymerase II transcription subunit 20 OS=Lotus japonicus OX=34305 GN=MED20 PE=2 SV=1) HSP 1 Score: 394.815 bits (1013), Expect = 6.237e-138 Identity = 182/215 (84.65%), Postives = 203/215 (94.42%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215 MP+RWILHWQP QG++VNSH LNEISQCV++ +GVK+GRWKSTLTFYR N+RDQ+++ +FPRDFLGISLMEQP KYYFIIRGHK+VVEADSSILTIMEKLQSYKSKVALNFEG+QYKLGDFQLR+IKVVPNQAENLRGILMEIEYLPISS+E +PI+EEFIEIWR+VLSKKSLPG FMRAEPNF EYGL D+Y+ QHTAVQYAAALAQLIASVQ Sbjct: 1 MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDFPRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGDFQLRVIKVVPNQAENLRGILMEIEYLPISSVEKPRPIMEEFIEIWREVLSKKSLPGHFMRAEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQ 215
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|B7FH40|B7FH40_MEDTR (Mediator of RNA polymerase II transcription subunit 20 OS=Medicago truncatula OX=3880 GN=25494183 PE=2 SV=1) HSP 1 Score: 390.193 bits (1001), Expect = 3.163e-136 Identity = 183/215 (85.12%), Postives = 201/215 (93.49%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215 MPVRWILHWQPSQG++VNSHILNEISQCV++ +GVK+GR K+TLTFYR N+RDQ++S+EFPRDFLGISLMEQP+KYYFIIRGHKL VEADSSILTIMEKLQSYKSKV LNFEG QYKLGDFQ+R+IKVVPNQAENLRGILMEIEYLP SS+E KPI+EEFIEIWR VLSKKSLPGQFMR EP F EYGLSD Y++QHTAVQYAAALAQLIASVQ Sbjct: 1 MPVRWILHWQPSQGAVVNSHILNEISQCVENLNGVKDGRTKATLTFYRPNLRDQSLSSEFPRDFLGISLMEQPNKYYFIIRGHKLAVEADSSILTIMEKLQSYKSKVTLNFEGTQYKLGDFQVRMIKVVPNQAENLRGILMEIEYLPNSSVEKVKPIMEEFIEIWRDVLSKKSLPGQFMRTEPIFVEYGLSDHYTWQHTAVQYAAALAQLIASVQ 215
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VJ95|A0A072VJ95_MEDTR (Mediator of RNA polymerase II transcription subunit 20 OS=Medicago truncatula OX=3880 GN=25486902 PE=3 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 1.453e-134 Identity = 181/215 (84.19%), Postives = 202/215 (93.95%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215 MPVRWILHWQPSQG+ VNSHILNEISQCV++F+GVK+GR K+T+TFY+ N++DQ+MSA+FPRDFLGISLMEQP+KYY IIR +KLV EADSSILTIMEKLQSYKSKVALN EGLQY LGDFQ+RLIKVVPNQAE+LRGILMEIEYLPISS+E AKPI+EEFIEIWR+VLSKKSLPGQFMRAEP FA+YGLSD+YS QHTAVQYAAAL QL ASVQ Sbjct: 1 MPVRWILHWQPSQGTTVNSHILNEISQCVENFNGVKDGRCKTTITFYKPNLKDQSMSAQFPRDFLGISLMEQPNKYYLIIRDNKLVAEADSSILTIMEKLQSYKSKVALNCEGLQYNLGDFQMRLIKVVPNQAESLRGILMEIEYLPISSLENAKPIMEEFIEIWREVLSKKSLPGQFMRAEPIFADYGLSDNYSLQHTAVQYAAALPQLFASVQ 215
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YPP2|A0A1S2YPP2_CICAR (Mediator of RNA polymerase II transcription subunit 20 OS=Cicer arietinum OX=3827 GN=LOC101507749 PE=3 SV=1) HSP 1 Score: 385.956 bits (990), Expect = 1.981e-134 Identity = 178/221 (80.54%), Postives = 209/221 (94.57%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221 MPVRWILHWQP+QG +VNSHI NEISQCV+S +GVK+GRWK+T+TFYR N+RDQ++SA+FPRDFLGISLM+QP+KYYFIIRG+K+V+EADSSILTIMEKLQSYKSKVALNFEG+QYKLGDFQ+++IKV PNQAENLRGILMEIEYLPISS+E A+PI+EEFI+IWR+VLSKKS+PGQFM AE +FAEYGLSD+YS+QHTAVQYA LAQLIA+VQ QLR+ Sbjct: 1 MPVRWILHWQPNQGVIVNSHIFNEISQCVESMNGVKDGRWKATITFYRPNLRDQSLSADFPRDFLGISLMDQPNKYYFIIRGNKIVLEADSSILTIMEKLQSYKSKVALNFEGVQYKLGDFQMKIIKVAPNQAENLRGILMEIEYLPISSVEKARPIMEEFIDIWREVLSKKSVPGQFMLAEADFAEYGLSDNYSWQHTAVQYATTLAQLIATVQ--QLRN 219
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5NRG7|A0A6P5NRG7_ARADU (Mediator of RNA polymerase II transcription subunit 20 OS=Arachis duranensis OX=130453 GN=LOC107457793 PE=3 SV=1) HSP 1 Score: 364.77 bits (935), Expect = 4.209e-126 Identity = 165/215 (76.74%), Postives = 200/215 (93.02%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215 M V+WILHW P+QGS+VNS ILNEISQCV+SF+ VK+GRWK+TLTFYR N+RD T+ +EFPRDFLGISL+EQP+KYYFIIRG+K+++EADS+ILTIMEKLQSYKSKVALNFEG+QYK+GDFQ++++KVVPNQ E+LRGIL+EIEYLPISSIE AKPI+EEF+E+WR+V+SKKSLPG F +AEP+FAEY L D+Y+ QHTA+QYAAALAQLIAS Q Sbjct: 1 MTVKWILHWTPTQGSVVNSQILNEISQCVESFNAVKDGRWKATLTFYRPNLRDPTIPSEFPRDFLGISLLEQPNKYYFIIRGNKIILEADSTILTIMEKLQSYKSKVALNFEGVQYKMGDFQMKVVKVVPNQGESLRGILIEIEYLPISSIEKAKPIMEEFLELWREVMSKKSLPGHFSQAEPHFAEYKLPDNYTSQHTAIQYAAALAQLIASAQ 215
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|V7C8R8|V7C8R8_PHAVU (Mediator of RNA polymerase II transcription subunit 20 OS=Phaseolus vulgaris OX=3885 GN=MED20 PE=3 SV=1) HSP 1 Score: 357.836 bits (917), Expect = 2.510e-123 Identity = 166/221 (75.11%), Postives = 201/221 (90.95%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221 MP+R ILHWQP+QG++VNS ILNEISQCV+S +GVKEGR K++LTFYR N+RD + + +FPRDFLGIS++EQP+KYYFIIRGHKLVVEAD SILTIMEKLQSYKSKVAL+FEG YKLGDFQ+R+IKVVPNQAE+LRGI++EIEYLPISS+E +KPI+E+FI++W++V+SKKSL GQF+ EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI QS QLR+ Sbjct: 1 MPIRCILHWQPNQGTMVNSQILNEISQCVESLNGVKEGRCKASLTFYRPNLRDPSTAIDFPRDFLGISMLEQPNKYYFIIRGHKLVVEADYSILTIMEKLQSYKSKVALHFEGALYKLGDFQVRVIKVVPNQAESLRGIMIEIEYLPISSVEKSKPIMEDFIDLWKEVVSKKSLAGQFIHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSSQLRN 218
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|C6TN75|C6TN75_SOYBN (Mediator of RNA polymerase II transcription subunit 20 OS=Glycine max OX=3847 GN=100814806 PE=2 SV=1) HSP 1 Score: 356.295 bits (913), Expect = 8.664e-123 Identity = 166/221 (75.11%), Postives = 202/221 (91.40%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221 MP+R ILHWQP+QGS+VNS +LNEISQCV+S +GVKEGR K++LTFYR N+RDQ+++ +FPRDFLGIS++EQP+KYYFIIRG K+V+EADSSIL IMEKLQSYKSKVAL+FEG+ YKLGDFQ+R+IKVVP+QAE+LRGI++EIEYLPISS+E +K ILEEFI+IW++V+SKKSL GQFM EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI QS QLR+ Sbjct: 1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSAQLRN 218
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5NSL6|A0A6P5NSL6_ARADU (Mediator of RNA polymerase II transcription subunit 20 OS=Arachis duranensis OX=130453 GN=LOC107457793 PE=3 SV=1) HSP 1 Score: 354.755 bits (909), Expect = 3.312e-122 Identity = 163/215 (75.81%), Postives = 197/215 (91.63%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215 M V+WILHW P+QGS+VNS ILNEISQCV+SF+ VK+GRWK+TLTFYR N+RD T+ +EFPRDFLGISL+EQP+KYYFIIRG+K+++EADS+ILTIMEKLQSYKSKVALNFE YK+GDFQ++++KVVPNQ E+LRGIL+EIEYLPISSIE AKPI+EEF+E+WR+V+SKKSLPG F +AEP+FAEY L D+Y+ QHTA+QYAAALAQLIAS Q Sbjct: 1 MTVKWILHWTPTQGSVVNSQILNEISQCVESFNAVKDGRWKATLTFYRPNLRDPTIPSEFPRDFLGISLLEQPNKYYFIIRGNKIILEADSTILTIMEKLQSYKSKVALNFE---YKMGDFQMKVVKVVPNQGESLRGILIEIEYLPISSIEKAKPIMEEFLELWREVMSKKSLPGHFSQAEPHFAEYKLPDNYTSQHTAIQYAAALAQLIASAQ 212
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0F8M5|A0A0R0F8M5_SOYBN (Mediator of RNA polymerase II transcription subunit 20 OS=Glycine max OX=3847 GN=100814806 PE=3 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 4.033e-122 Identity = 166/221 (75.11%), Postives = 202/221 (91.40%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221 MP+R ILHWQP+QGS+VNS +LNEISQCV+S +GVKEGR K++LTFYR N+RDQ+++ +FPRDFLGIS++EQP+KYYFIIRG K+V+EADSSIL IMEKLQSYKSKVAL+FEG+ YKLGDFQ+R+IKVVP+QAE+LRGI++EIEYLPISS+E +K ILEEFI+IW++V+SKKSL GQFM EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI QS QLR+ Sbjct: 31 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSAQLRN 248
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|I1LY46|I1LY46_SOYBN (Mediator of RNA polymerase II transcription subunit 20 OS=Glycine max OX=3847 GN=100794645 PE=3 SV=1) HSP 1 Score: 354.755 bits (909), Expect = 4.436e-122 Identity = 165/221 (74.66%), Postives = 201/221 (90.95%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221 MP+R ILHWQP+QGS+VNS +LNEISQCV+S +GVKEGR K++LTFYR N+RDQ+++ +FPRDFLGIS++EQP+KYY IIRG K+V+EADSSIL IMEKLQSYKSKVAL+FEG+ YKLGDFQ+R+IKVVP+QAE+LRGI++EIEYLPISS+E +K ILEEFI+IW++V+SKKSL GQFM EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI QS QLR+ Sbjct: 1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYLIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQIRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSAQLRN 218
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6NPF4|MD20A_ARATH (Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana OX=3702 GN=MED20A PE=1 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 1.830e-106 Identity = 138/216 (63.89%), Postives = 181/216 (83.80%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQS 216 MPV+W+LHWQP+QGS V+S ILNE +QCV+S +GVKEGRWK+TL +Y+ ++DQ EFPRDFLGISL +QP+KYYFIIR ++V+EADSSI IMEKLQSYKSKVAL F+G QY+LGDF+LR+ KVVP +EN+RGI+ME+EYLPISS+E A+ ++EEF+EIW + L+K+SLPG+F+ + NF E+GL D Y+ QHTAV+YA +A +IA+VQ+ Sbjct: 1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQA 216
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M0S0|MD20B_ARATH (Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana OX=3702 GN=MED20B PE=3 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 4.598e-100 Identity = 129/218 (59.17%), Postives = 179/218 (82.11%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQ 218 MPV+W+LHWQP+QGS +S ILNE++Q ++S +GVKEG WK+TL +Y+ ++DQ AEFPR+F+GISL E+PDKYYF+IR ++VVEADSSI IME LQSYK K++ FEGL+Y+LGDF+LR+ KVVP AE +RG++ME+EYLPISS+ AK ++EEF+EIW++ +SK+SLPG+F+ E NF ++GL D+Y+ QHTAV YA +A L+A++Q+G+ Sbjct: 1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEFPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGDFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQAGR 218
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q54FL3|MED20_DICDI (Putative mediator of RNA polymerase II transcription subunit 20 OS=Dictyostelium discoideum OX=44689 GN=med20 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.014e-10 Identity = 59/193 (30.57%), Postives = 92/193 (47.67%), Query Frame = 0 Query: 22 LNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEY----LPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEP-----NFAEY-GLSDSYSFQHTAVQYA 204 L E+++ ++ G+K + Y V D S PR+F + E+P K + + R +VE D +++I+EK SYK + +Y+LGDF +R+ +V +RGIL+E+EY P++S +L EFI +L G F EP +F+ Y L SYS HT+ QY Sbjct: 13 LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDG--SNLIPREFHLLLYDEKPKKCFTVCR--DTIVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIV--FRTEIRGILVEVEYTACSTPVTSPFNCTKLLSEFI--------NGNL-GPF--PEPIQTSFDFSAYPTLPKSYSDLHTSYQYV 188
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT2G28230.1 (| TATA-binding related factor (TRF) of subunit 20 of Mediator complex | Chr2:12037855-12039009 REVERSE LENGTH=219 | 201606) HSP 1 Score: 308.531 bits (789), Expect = 1.872e-107 Identity = 138/216 (63.89%), Postives = 181/216 (83.80%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQS 216 MPV+W+LHWQP+QGS V+S ILNE +QCV+S +GVKEGRWK+TL +Y+ ++DQ EFPRDFLGISL +QP+KYYFIIR ++V+EADSSI IMEKLQSYKSKVAL F+G QY+LGDF+LR+ KVVP +EN+RGI+ME+EYLPISS+E A+ ++EEF+EIW + L+K+SLPG+F+ + NF E+GL D Y+ QHTAV+YA +A +IA+VQ+ Sbjct: 1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQA 216
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT4G09070.1 (| TATA-binding related factor (TRF) of subunit 20 of Mediator complex | Chr4:5802308-5803392 FORWARD LENGTH=219 | 201606) HSP 1 Score: 292.352 bits (747), Expect = 4.704e-101 Identity = 129/218 (59.17%), Postives = 179/218 (82.11%), Query Frame = 0 Query: 1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQ 218 MPV+W+LHWQP+QGS +S ILNE++Q ++S +GVKEG WK+TL +Y+ ++DQ AEFPR+F+GISL E+PDKYYF+IR ++VVEADSSI IME LQSYK K++ FEGL+Y+LGDF+LR+ KVVP AE +RG++ME+EYLPISS+ AK ++EEF+EIW++ +SK+SLPG+F+ E NF ++GL D+Y+ QHTAV YA +A L+A++Q+G+ Sbjct: 1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEFPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGDFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQAGR 218
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT2G28230.2 (| TATA-binding related factor (TRF) of subunit 20 of Mediator complex | Chr2:12037855-12038762 REVERSE LENGTH=170 | 201606) HSP 1 Score: 229.18 bits (583), Expect = 8.112e-77 Identity = 105/166 (63.25%), Postives = 138/166 (83.13%), Query Frame = 0 Query: 51 VRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQS 216 ++DQ EFPRDFLGISL +QP+KYYFIIR ++V+EADSSI IMEKLQSYKSKVAL F+G QY+LGDF+LR+ KVVP +EN+RGI+ME+EYLPISS+E A+ ++EEF+EIW + L+K+SLPG+F+ + NF E+GL D Y+ QHTAV+YA +A +IA+VQ+ Sbjct: 2 LKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQA 167
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT2G28020.1 (| mediator of RNA polymerase II transcription subunit | Chr2:11933728-11933940 FORWARD LENGTH=70 | 201606) HSP 1 Score: 79.337 bits (194), Expect = 2.120e-19 Identity = 34/67 (50.75%), Postives = 53/67 (79.10%), Query Frame = 0 Query: 151 IETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQ-YAAALAQLIASVQS 216 +E A+ ++EEF+EIW + L+K+SLPG+F+ + NF E+GL D+Y+ QHTAV+ YA +A +IA+VQ+ Sbjct: 1 MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAHMIATVQA 67 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 3
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 4
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.4g159880.1_tif_v1 ID=Vfaba.Tiffany.R1.4g159880.1_tif_v1; Name=Vfaba.Tiffany.R1.4g159880.1; organism=Vicia faba; type=mRNA; length=666bpback to top protein sequence of Vfaba.Tiffany.R1.4g159880.1_tif_v1 >Vfaba.Tiffany.R1.4g159880.1_tif_v1 ID=Vfaba.Tiffany.R1.4g159880.1_tif_v1; Name=Vfaba.Tiffany.R1.4g159880.1_tif_v1; organism=Vicia faba; type=polypeptide; length=221bpback to top mRNA from alignment at chr4:1368742224..1368746205+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.4g159880.1_tif_v1 ID=Vfaba.Tiffany.R1.4g159880.1_tif_v1; Name=Vfaba.Tiffany.R1.4g159880.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1368742224..1368746205+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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