Vfaba.Tiffany.R1.4g159880.1

Transcript Overview
NameVfaba.Tiffany.R1.4g159880.1
Unique NameVfaba.Tiffany.R1.4g159880.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length666
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1368742224..1368746205 +Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR356Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR397Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR420Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
astifL602Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL607Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL804Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifL171Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL431Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL635Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL648Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cctifL0448Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL084Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL769Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL878Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
tiftifL032Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL092Pisum sativum Cameor genome v1aPisum sativum
pvtifL053Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tiftifL218Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifL107Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pstifL374Pisum sativum Cameor genome v1aPisum sativum
pvtifL371Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvtifL846Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvtifL863Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR476Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR522Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhR312Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR569Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caitifL081Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0046Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0047Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0234Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0344Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL610Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0400Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0401Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL845Cicer arietinum ICC 4958 genome v2Cicer arietinum
tifvrvR449Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR491Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR525Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvuaR410Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR432Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvuaR473Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR496Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR519Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR528Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL371Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL567Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL580Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014652199.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004507930.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.003G131900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg20282.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_03153Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat04G0063100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_26067Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan07g139500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun03g396700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_004129Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr03.1512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_20790.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_21602.1Cicer arietinum ICC 4958 genome v2Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.4g208680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.4g159880Vfaba.Tiffany.R1.4g159880_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.4g159880.1_tif_v1-exonVfaba.Tiffany.R1.4g159880.1_tif_v1-exon-chr4_tif_v1:1368742224..1368742237Vicia fabaexon
Vfaba.Tiffany.R1.4g159880.1_tif_v1-exonVfaba.Tiffany.R1.4g159880.1_tif_v1-exon-chr4_tif_v1:1368742321..1368742642Vicia fabaexon
Vfaba.Tiffany.R1.4g159880.1_tif_v1-exonVfaba.Tiffany.R1.4g159880.1_tif_v1-exon-chr4_tif_v1:1368742733..1368742822Vicia fabaexon
Vfaba.Tiffany.R1.4g159880.1_tif_v1-exonVfaba.Tiffany.R1.4g159880.1_tif_v1-exon-chr4_tif_v1:1368745966..1368746205Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.4g159880.1_tif_v1-cdsVfaba.Tiffany.R1.4g159880.1_tif_v1-cds-chr4_tif_v1:1368742224..1368742237Vicia fabaCDS
Vfaba.Tiffany.R1.4g159880.1_tif_v1-cdsVfaba.Tiffany.R1.4g159880.1_tif_v1-cds-chr4_tif_v1:1368742321..1368742642Vicia fabaCDS
Vfaba.Tiffany.R1.4g159880.1_tif_v1-cdsVfaba.Tiffany.R1.4g159880.1_tif_v1-cds-chr4_tif_v1:1368742733..1368742822Vicia fabaCDS
Vfaba.Tiffany.R1.4g159880.1_tif_v1-cdsVfaba.Tiffany.R1.4g159880.1_tif_v1-cds-chr4_tif_v1:1368745966..1368746205Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.4g159880.1_tif_v1Vfaba.Tiffany.R1.4g159880.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.4g159880.1_tif_v1Vfaba.Tiffany.R1.4g159880.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|I3T3B9|I3T3B9_LOTJA (Mediator of RNA polymerase II transcription subunit 20 OS=Lotus japonicus OX=34305 GN=MED20 PE=2 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 6.237e-138
Identity = 182/215 (84.65%), Postives = 203/215 (94.42%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215
            MP+RWILHWQP QG++VNSH LNEISQCV++ +GVK+GRWKSTLTFYR N+RDQ+++ +FPRDFLGISLMEQP KYYFIIRGHK+VVEADSSILTIMEKLQSYKSKVALNFEG+QYKLGDFQLR+IKVVPNQAENLRGILMEIEYLPISS+E  +PI+EEFIEIWR+VLSKKSLPG FMRAEPNF EYGL D+Y+ QHTAVQYAAALAQLIASVQ
Sbjct:    1 MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDFPRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGDFQLRVIKVVPNQAENLRGILMEIEYLPISSVEKPRPIMEEFIEIWREVLSKKSLPGHFMRAEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQ 215          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|B7FH40|B7FH40_MEDTR (Mediator of RNA polymerase II transcription subunit 20 OS=Medicago truncatula OX=3880 GN=25494183 PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 3.163e-136
Identity = 183/215 (85.12%), Postives = 201/215 (93.49%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215
            MPVRWILHWQPSQG++VNSHILNEISQCV++ +GVK+GR K+TLTFYR N+RDQ++S+EFPRDFLGISLMEQP+KYYFIIRGHKL VEADSSILTIMEKLQSYKSKV LNFEG QYKLGDFQ+R+IKVVPNQAENLRGILMEIEYLP SS+E  KPI+EEFIEIWR VLSKKSLPGQFMR EP F EYGLSD Y++QHTAVQYAAALAQLIASVQ
Sbjct:    1 MPVRWILHWQPSQGAVVNSHILNEISQCVENLNGVKDGRTKATLTFYRPNLRDQSLSSEFPRDFLGISLMEQPNKYYFIIRGHKLAVEADSSILTIMEKLQSYKSKVTLNFEGTQYKLGDFQVRMIKVVPNQAENLRGILMEIEYLPNSSVEKVKPIMEEFIEIWRDVLSKKSLPGQFMRTEPIFVEYGLSDHYTWQHTAVQYAAALAQLIASVQ 215          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VJ95|A0A072VJ95_MEDTR (Mediator of RNA polymerase II transcription subunit 20 OS=Medicago truncatula OX=3880 GN=25486902 PE=3 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.453e-134
Identity = 181/215 (84.19%), Postives = 202/215 (93.95%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215
            MPVRWILHWQPSQG+ VNSHILNEISQCV++F+GVK+GR K+T+TFY+ N++DQ+MSA+FPRDFLGISLMEQP+KYY IIR +KLV EADSSILTIMEKLQSYKSKVALN EGLQY LGDFQ+RLIKVVPNQAE+LRGILMEIEYLPISS+E AKPI+EEFIEIWR+VLSKKSLPGQFMRAEP FA+YGLSD+YS QHTAVQYAAAL QL ASVQ
Sbjct:    1 MPVRWILHWQPSQGTTVNSHILNEISQCVENFNGVKDGRCKTTITFYKPNLKDQSMSAQFPRDFLGISLMEQPNKYYLIIRDNKLVAEADSSILTIMEKLQSYKSKVALNCEGLQYNLGDFQMRLIKVVPNQAESLRGILMEIEYLPISSLENAKPIMEEFIEIWREVLSKKSLPGQFMRAEPIFADYGLSDNYSLQHTAVQYAAALPQLFASVQ 215          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YPP2|A0A1S2YPP2_CICAR (Mediator of RNA polymerase II transcription subunit 20 OS=Cicer arietinum OX=3827 GN=LOC101507749 PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.981e-134
Identity = 178/221 (80.54%), Postives = 209/221 (94.57%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221
            MPVRWILHWQP+QG +VNSHI NEISQCV+S +GVK+GRWK+T+TFYR N+RDQ++SA+FPRDFLGISLM+QP+KYYFIIRG+K+V+EADSSILTIMEKLQSYKSKVALNFEG+QYKLGDFQ+++IKV PNQAENLRGILMEIEYLPISS+E A+PI+EEFI+IWR+VLSKKS+PGQFM AE +FAEYGLSD+YS+QHTAVQYA  LAQLIA+VQ  QLR+
Sbjct:    1 MPVRWILHWQPNQGVIVNSHIFNEISQCVESMNGVKDGRWKATITFYRPNLRDQSLSADFPRDFLGISLMDQPNKYYFIIRGNKIVLEADSSILTIMEKLQSYKSKVALNFEGVQYKLGDFQMKIIKVAPNQAENLRGILMEIEYLPISSVEKARPIMEEFIDIWREVLSKKSVPGQFMLAEADFAEYGLSDNYSWQHTAVQYATTLAQLIATVQ--QLRN 219          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5NRG7|A0A6P5NRG7_ARADU (Mediator of RNA polymerase II transcription subunit 20 OS=Arachis duranensis OX=130453 GN=LOC107457793 PE=3 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 4.209e-126
Identity = 165/215 (76.74%), Postives = 200/215 (93.02%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215
            M V+WILHW P+QGS+VNS ILNEISQCV+SF+ VK+GRWK+TLTFYR N+RD T+ +EFPRDFLGISL+EQP+KYYFIIRG+K+++EADS+ILTIMEKLQSYKSKVALNFEG+QYK+GDFQ++++KVVPNQ E+LRGIL+EIEYLPISSIE AKPI+EEF+E+WR+V+SKKSLPG F +AEP+FAEY L D+Y+ QHTA+QYAAALAQLIAS Q
Sbjct:    1 MTVKWILHWTPTQGSVVNSQILNEISQCVESFNAVKDGRWKATLTFYRPNLRDPTIPSEFPRDFLGISLLEQPNKYYFIIRGNKIILEADSTILTIMEKLQSYKSKVALNFEGVQYKMGDFQMKVVKVVPNQGESLRGILIEIEYLPISSIEKAKPIMEEFLELWREVMSKKSLPGHFSQAEPHFAEYKLPDNYTSQHTAIQYAAALAQLIASAQ 215          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|V7C8R8|V7C8R8_PHAVU (Mediator of RNA polymerase II transcription subunit 20 OS=Phaseolus vulgaris OX=3885 GN=MED20 PE=3 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.510e-123
Identity = 166/221 (75.11%), Postives = 201/221 (90.95%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221
            MP+R ILHWQP+QG++VNS ILNEISQCV+S +GVKEGR K++LTFYR N+RD + + +FPRDFLGIS++EQP+KYYFIIRGHKLVVEAD SILTIMEKLQSYKSKVAL+FEG  YKLGDFQ+R+IKVVPNQAE+LRGI++EIEYLPISS+E +KPI+E+FI++W++V+SKKSL GQF+  EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI   QS QLR+
Sbjct:    1 MPIRCILHWQPNQGTMVNSQILNEISQCVESLNGVKEGRCKASLTFYRPNLRDPSTAIDFPRDFLGISMLEQPNKYYFIIRGHKLVVEADYSILTIMEKLQSYKSKVALHFEGALYKLGDFQVRVIKVVPNQAESLRGIMIEIEYLPISSVEKSKPIMEDFIDLWKEVVSKKSLAGQFIHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSSQLRN 218          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|C6TN75|C6TN75_SOYBN (Mediator of RNA polymerase II transcription subunit 20 OS=Glycine max OX=3847 GN=100814806 PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 8.664e-123
Identity = 166/221 (75.11%), Postives = 202/221 (91.40%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221
            MP+R ILHWQP+QGS+VNS +LNEISQCV+S +GVKEGR K++LTFYR N+RDQ+++ +FPRDFLGIS++EQP+KYYFIIRG K+V+EADSSIL IMEKLQSYKSKVAL+FEG+ YKLGDFQ+R+IKVVP+QAE+LRGI++EIEYLPISS+E +K ILEEFI+IW++V+SKKSL GQFM  EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI   QS QLR+
Sbjct:    1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSAQLRN 218          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5NSL6|A0A6P5NSL6_ARADU (Mediator of RNA polymerase II transcription subunit 20 OS=Arachis duranensis OX=130453 GN=LOC107457793 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 3.312e-122
Identity = 163/215 (75.81%), Postives = 197/215 (91.63%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQ 215
            M V+WILHW P+QGS+VNS ILNEISQCV+SF+ VK+GRWK+TLTFYR N+RD T+ +EFPRDFLGISL+EQP+KYYFIIRG+K+++EADS+ILTIMEKLQSYKSKVALNFE   YK+GDFQ++++KVVPNQ E+LRGIL+EIEYLPISSIE AKPI+EEF+E+WR+V+SKKSLPG F +AEP+FAEY L D+Y+ QHTA+QYAAALAQLIAS Q
Sbjct:    1 MTVKWILHWTPTQGSVVNSQILNEISQCVESFNAVKDGRWKATLTFYRPNLRDPTIPSEFPRDFLGISLLEQPNKYYFIIRGNKIILEADSTILTIMEKLQSYKSKVALNFE---YKMGDFQMKVVKVVPNQGESLRGILIEIEYLPISSIEKAKPIMEEFLELWREVMSKKSLPGHFSQAEPHFAEYKLPDNYTSQHTAIQYAAALAQLIASAQ 212          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0F8M5|A0A0R0F8M5_SOYBN (Mediator of RNA polymerase II transcription subunit 20 OS=Glycine max OX=3847 GN=100814806 PE=3 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 4.033e-122
Identity = 166/221 (75.11%), Postives = 202/221 (91.40%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221
            MP+R ILHWQP+QGS+VNS +LNEISQCV+S +GVKEGR K++LTFYR N+RDQ+++ +FPRDFLGIS++EQP+KYYFIIRG K+V+EADSSIL IMEKLQSYKSKVAL+FEG+ YKLGDFQ+R+IKVVP+QAE+LRGI++EIEYLPISS+E +K ILEEFI+IW++V+SKKSL GQFM  EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI   QS QLR+
Sbjct:   31 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSAQLRN 248          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Match: tr|I1LY46|I1LY46_SOYBN (Mediator of RNA polymerase II transcription subunit 20 OS=Glycine max OX=3847 GN=100794645 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 4.436e-122
Identity = 165/221 (74.66%), Postives = 201/221 (90.95%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQLRS 221
            MP+R ILHWQP+QGS+VNS +LNEISQCV+S +GVKEGR K++LTFYR N+RDQ+++ +FPRDFLGIS++EQP+KYY IIRG K+V+EADSSIL IMEKLQSYKSKVAL+FEG+ YKLGDFQ+R+IKVVP+QAE+LRGI++EIEYLPISS+E +K ILEEFI+IW++V+SKKSL GQFM  EPN+AEYGLSD+Y+ QHTAVQYAAALAQLI   QS QLR+
Sbjct:    1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYLIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQIRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLI---QSAQLRN 218          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6NPF4|MD20A_ARATH (Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana OX=3702 GN=MED20A PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.830e-106
Identity = 138/216 (63.89%), Postives = 181/216 (83.80%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQS 216
            MPV+W+LHWQP+QGS V+S ILNE +QCV+S +GVKEGRWK+TL +Y+  ++DQ    EFPRDFLGISL +QP+KYYFIIR  ++V+EADSSI  IMEKLQSYKSKVAL F+G QY+LGDF+LR+ KVVP  +EN+RGI+ME+EYLPISS+E A+ ++EEF+EIW + L+K+SLPG+F+  + NF E+GL D Y+ QHTAV+YA  +A +IA+VQ+
Sbjct:    1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQA 216          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M0S0|MD20B_ARATH (Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana OX=3702 GN=MED20B PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 4.598e-100
Identity = 129/218 (59.17%), Postives = 179/218 (82.11%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQ 218
            MPV+W+LHWQP+QGS  +S ILNE++Q ++S +GVKEG WK+TL +Y+  ++DQ   AEFPR+F+GISL E+PDKYYF+IR  ++VVEADSSI  IME LQSYK K++  FEGL+Y+LGDF+LR+ KVVP  AE +RG++ME+EYLPISS+  AK ++EEF+EIW++ +SK+SLPG+F+  E NF ++GL D+Y+ QHTAV YA  +A L+A++Q+G+
Sbjct:    1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEFPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGDFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQAGR 218          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q54FL3|MED20_DICDI (Putative mediator of RNA polymerase II transcription subunit 20 OS=Dictyostelium discoideum OX=44689 GN=med20 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.014e-10
Identity = 59/193 (30.57%), Postives = 92/193 (47.67%), Query Frame = 0
Query:   22 LNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEY----LPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEP-----NFAEY-GLSDSYSFQHTAVQYA 204
            L E+++ ++   G+K        + Y   V D   S   PR+F  +   E+P K + + R    +VE D  +++I+EK  SYK +        +Y+LGDF +R+  +V      +RGIL+E+EY     P++S      +L EFI          +L G F   EP     +F+ Y  L  SYS  HT+ QY 
Sbjct:   13 LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDG--SNLIPREFHLLLYDEKPKKCFTVCR--DTIVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIV--FRTEIRGILVEVEYTACSTPVTSPFNCTKLLSEFI--------NGNL-GPF--PEPIQTSFDFSAYPTLPKSYSDLHTSYQYV 188          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT2G28230.1 (| TATA-binding related factor (TRF) of subunit 20 of Mediator complex | Chr2:12037855-12039009 REVERSE LENGTH=219 | 201606)

HSP 1 Score: 308.531 bits (789), Expect = 1.872e-107
Identity = 138/216 (63.89%), Postives = 181/216 (83.80%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQS 216
            MPV+W+LHWQP+QGS V+S ILNE +QCV+S +GVKEGRWK+TL +Y+  ++DQ    EFPRDFLGISL +QP+KYYFIIR  ++V+EADSSI  IMEKLQSYKSKVAL F+G QY+LGDF+LR+ KVVP  +EN+RGI+ME+EYLPISS+E A+ ++EEF+EIW + L+K+SLPG+F+  + NF E+GL D Y+ QHTAV+YA  +A +IA+VQ+
Sbjct:    1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQA 216          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT4G09070.1 (| TATA-binding related factor (TRF) of subunit 20 of Mediator complex | Chr4:5802308-5803392 FORWARD LENGTH=219 | 201606)

HSP 1 Score: 292.352 bits (747), Expect = 4.704e-101
Identity = 129/218 (59.17%), Postives = 179/218 (82.11%), Query Frame = 0
Query:    1 MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRANVRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQSGQ 218
            MPV+W+LHWQP+QGS  +S ILNE++Q ++S +GVKEG WK+TL +Y+  ++DQ   AEFPR+F+GISL E+PDKYYF+IR  ++VVEADSSI  IME LQSYK K++  FEGL+Y+LGDF+LR+ KVVP  AE +RG++ME+EYLPISS+  AK ++EEF+EIW++ +SK+SLPG+F+  E NF ++GL D+Y+ QHTAV YA  +A L+A++Q+G+
Sbjct:    1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEFPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGDFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQAGR 218          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT2G28230.2 (| TATA-binding related factor (TRF) of subunit 20 of Mediator complex | Chr2:12037855-12038762 REVERSE LENGTH=170 | 201606)

HSP 1 Score: 229.18 bits (583), Expect = 8.112e-77
Identity = 105/166 (63.25%), Postives = 138/166 (83.13%), Query Frame = 0
Query:   51 VRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKLQSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISSIETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQYAAALAQLIASVQS 216
            ++DQ    EFPRDFLGISL +QP+KYYFIIR  ++V+EADSSI  IMEKLQSYKSKVAL F+G QY+LGDF+LR+ KVVP  +EN+RGI+ME+EYLPISS+E A+ ++EEF+EIW + L+K+SLPG+F+  + NF E+GL D Y+ QHTAV+YA  +A +IA+VQ+
Sbjct:    2 LKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQA 167          
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Match: AT2G28020.1 (| mediator of RNA polymerase II transcription subunit | Chr2:11933728-11933940 FORWARD LENGTH=70 | 201606)

HSP 1 Score: 79.337 bits (194), Expect = 2.120e-19
Identity = 34/67 (50.75%), Postives = 53/67 (79.10%), Query Frame = 0
Query:  151 IETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTAVQ-YAAALAQLIASVQS 216
            +E A+ ++EEF+EIW + L+K+SLPG+F+  + NF E+GL D+Y+ QHTAV+ YA  +A +IA+VQ+
Sbjct:    1 MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAHMIATVQA 67          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|I3T3B9|I3T3B9_LOTJA6.237e-13884.65Mediator of RNA polymerase II transcription subuni... [more]
tr|B7FH40|B7FH40_MEDTR3.163e-13685.12Mediator of RNA polymerase II transcription subuni... [more]
tr|A0A072VJ95|A0A072VJ95_MEDTR1.453e-13484.19Mediator of RNA polymerase II transcription subuni... [more]
tr|A0A1S2YPP2|A0A1S2YPP2_CICAR1.981e-13480.54Mediator of RNA polymerase II transcription subuni... [more]
tr|A0A6P5NRG7|A0A6P5NRG7_ARADU4.209e-12676.74Mediator of RNA polymerase II transcription subuni... [more]
tr|V7C8R8|V7C8R8_PHAVU2.510e-12375.11Mediator of RNA polymerase II transcription subuni... [more]
tr|C6TN75|C6TN75_SOYBN8.664e-12375.11Mediator of RNA polymerase II transcription subuni... [more]
tr|A0A6P5NSL6|A0A6P5NSL6_ARADU3.312e-12275.81Mediator of RNA polymerase II transcription subuni... [more]
tr|A0A0R0F8M5|A0A0R0F8M5_SOYBN4.033e-12275.11Mediator of RNA polymerase II transcription subuni... [more]
tr|I1LY46|I1LY46_SOYBN4.436e-12274.66Mediator of RNA polymerase II transcription subuni... [more]
back to top
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q6NPF4|MD20A_ARATH1.830e-10663.89Mediator of RNA polymerase II transcription subuni... [more]
sp|Q9M0S0|MD20B_ARATH4.598e-10059.17Mediator of RNA polymerase II transcription subuni... [more]
sp|Q54FL3|MED20_DICDI1.014e-1030.57Putative mediator of RNA polymerase II transcripti... [more]
back to top
BLAST of Vfaba.Tiffany.R1.4g159880.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
AT2G28230.11.872e-10763.89| TATA-binding related factor (TRF) of subunit 20 ... [more]
AT4G09070.14.704e-10159.17| TATA-binding related factor (TRF) of subunit 20 ... [more]
AT2G28230.28.112e-7763.25| TATA-binding related factor (TRF) of subunit 20 ... [more]
AT2G28020.12.120e-1950.75| mediator of RNA polymerase II transcription subu... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 1..207
e-value: 1.3E-37
score: 129.3
IPR013921Mediator complex, subunit Med20PANTHERPTHR12465UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49coord: 6..215

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.4g159880.1_tif_v1 ID=Vfaba.Tiffany.R1.4g159880.1_tif_v1; Name=Vfaba.Tiffany.R1.4g159880.1; organism=Vicia faba; type=mRNA; length=666bp
ATGCCTGTCAGATGGATTCTTCACTGGCAACCGAGTCAAGGATCGCTAGT
AAACAGCCACATACTGAACGAAATCTCGCAGTGCGTCGACAGTTTCAGCG
GCGTCAAAGAAGGAAGATGGAAATCCACCCTCACTTTCTACAGAGCCAAT
GTACGAGACCAAACAATGAGCGCTGAATTCCCTCGCGATTTTCTCGGAAT
TTCGCTTATGGAACAGCCTGATAAATATTACTTCATCATTCGCGGTCATA
AGCTTGTTGTTGAGGCTGATTCTTCTATTTTGACTATCATGGAGAAACTT
CAGTCTTATAAATCTAAAGTTGCACTTAATTTTGAGGGTTTGCAGTATAA
ACTGGGTGACTTTCAGTTGAGACTGATTAAAGTTGTTCCGAATCAAGCTG
AAAATCTCAGAGGCATTTTAATGGAGATTGAGTATCTTCCTATTTCTTCA
ATTGAAACAGCCAAGCCAATTCTTGAAGAGTTCATTGAAATATGGCGACA
AGTGCTGTCGAAAAAATCATTACCCGGTCAATTCATGCGAGCGGAACCAA
ATTTTGCAGAATATGGGCTCTCTGACAGTTACAGTTTTCAACACACAGCC
GTTCAGTATGCTGCTGCATTGGCCCAATTAATTGCATCAGTGCAGTCAGG
GCAGTTAAGGAGTTAA
back to top

protein sequence of Vfaba.Tiffany.R1.4g159880.1_tif_v1

>Vfaba.Tiffany.R1.4g159880.1_tif_v1 ID=Vfaba.Tiffany.R1.4g159880.1_tif_v1; Name=Vfaba.Tiffany.R1.4g159880.1_tif_v1; organism=Vicia faba; type=polypeptide; length=221bp
MPVRWILHWQPSQGSLVNSHILNEISQCVDSFSGVKEGRWKSTLTFYRAN
VRDQTMSAEFPRDFLGISLMEQPDKYYFIIRGHKLVVEADSSILTIMEKL
QSYKSKVALNFEGLQYKLGDFQLRLIKVVPNQAENLRGILMEIEYLPISS
IETAKPILEEFIEIWRQVLSKKSLPGQFMRAEPNFAEYGLSDSYSFQHTA
VQYAAALAQLIASVQSGQLRS
back to top

mRNA from alignment at chr4:1368742224..1368746205+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.4g159880.1_tif_v1 ID=Vfaba.Tiffany.R1.4g159880.1_tif_v1; Name=Vfaba.Tiffany.R1.4g159880.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1368742224..1368746205+ (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex