Vfaba.Tiffany.R1.5g136160.1

Transcript Overview


Name	Vfaba.Tiffany.R1.5g136160.1
Unique Name	Vfaba.Tiffany.R1.5g136160.1_tif_v1
Type	mRNA
Organism	Vicia faba (Faba bean)
Sequence length	972

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:1180365715..1180367680 -	Vicia faba cv. Tiffany genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vicia faba cv. Tiffany genome v1.0	2023-05-02
InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11	2023-05-10

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
tifzwsR443	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
catifL222	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
catifL345	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
crtifL273	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crtifL432	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pstifL242	Pisum sativum Cameor genome v1a	Pisum sativum
tifvuR581	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
tifvfhR353	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvfhR361	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuR637	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caitifL469	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
antifL0448	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0638	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0697	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0849	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0853	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL1157	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
tifvrvR560	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
tifvrvR612	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
tifvuaR488	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvuaR544	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvssR641	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
cantifL183	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cantifL287	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g136160	Vfaba.Tiffany.R1.5g136160_tif_v1	Vicia faba	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g136160.1_tif_v1-exon	Vfaba.Tiffany.R1.5g136160.1_tif_v1-exon-chr5_tif_v1:1180365715..1180366524	Vicia faba	exon
Vfaba.Tiffany.R1.5g136160.1_tif_v1-exon	Vfaba.Tiffany.R1.5g136160.1_tif_v1-exon-chr5_tif_v1:1180366622..1180366730	Vicia faba	exon
Vfaba.Tiffany.R1.5g136160.1_tif_v1-exon	Vfaba.Tiffany.R1.5g136160.1_tif_v1-exon-chr5_tif_v1:1180367628..1180367680	Vicia faba	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g136160.1_tif_v1-cds	Vfaba.Tiffany.R1.5g136160.1_tif_v1-cds-chr5_tif_v1:1180365715..1180366524	Vicia faba	CDS
Vfaba.Tiffany.R1.5g136160.1_tif_v1-cds	Vfaba.Tiffany.R1.5g136160.1_tif_v1-cds-chr5_tif_v1:1180366622..1180366730	Vicia faba	CDS
Vfaba.Tiffany.R1.5g136160.1_tif_v1-cds	Vfaba.Tiffany.R1.5g136160.1_tif_v1-cds-chr5_tif_v1:1180367628..1180367680	Vicia faba	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g136160.1_tif_v1	Vfaba.Tiffany.R1.5g136160.1_tif_v1	Vicia faba	polypeptide
Vfaba.Tiffany.R1.5g136160.1_tif_v1	Vfaba.Tiffany.R1.5g136160.1_tif_v1-protein	Vicia faba	polypeptide

Homology

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NQV8|A0A2K3NQV8_TRIPR (Pentatricopeptide repeat-containing protein OS=Trifolium pratense OX=57577 GN=L195_g001875 PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.877e-60
Identity = 107/179 (59.78%), Postives = 124/179 (69.27%), Query Frame = 0

Query:   76 TQAPSVRNRNPARHRSHLHHRSSSLNQTPSVKLITSFNNFSNSPSSAAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            +Q P ++     R    L H   S N T  + +   F  +      A AKRFDYIE+LLE QK LPQSR EGFV+RIITLYGKAGM++HALDTFY+MH FKC  TVKSFNAALNV V  R F   V+F+DEV   FNI+L VYSVNIA+KAFCE +K QEAYLFM+ CENNK  KPD V
Sbjct:   31 SQPPILQILKSERDPHKLFHLFKS-NATNRLLIENRFAFYDTVSRLAGAKRFDYIEQLLEQQKTLPQSRREGFVVRIITLYGKAGMIQHALDTFYQMHNFKCVRTVKSFNAALNVLVQTRNFDSAVQFIDEVPENFNIRLDVYSVNIAIKAFCELEKLQEAYLFMLDCENNKGVKPDVV 208

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XEE8|A0A1S2XEE8_CICAR (pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Cicer arietinum OX=3827 GN=LOC101489456 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.530e-56
Identity = 95/154 (61.69%), Postives = 110/154 (71.43%), Query Frame = 0

Query:  101 NQTPSVKLITSFNNFSNSPSSAAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            N T  + +   F  +      A AKRFDYIE+LLE QK LPQSR EGFV+RII LYG AGM +HAL+TFY+MH FKC  TVKSFN  L V    R +  +V+FL++V S FNIKL VYSVNIA+KAFCE DK QEAYLFM+ CENNK  KPD V
Sbjct:   55 NATNPILIENRFAFYDTVSRLAGAKRFDYIEQLLEQQKTLPQSRREGFVVRIIALYGNAGMTKHALETFYQMHSFKCNRTVKSFNITLKVLAQTRDYDSIVRFLNDVPSSFNIKLDVYSVNIAIKAFCELDKLQEAYLFMLECENNKGIKPDVV 208

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|Q2HUC1|Q2HUC1_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11421506 PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.182e-55
Identity = 114/231 (49.35%), Postives = 142/231 (61.47%), Query Frame = 0

Query:   26 SSSTQTTLKP--PFCDTVDFNLPSTKPPPQLQFHLQSFIQLKSPTFSSYPTFTQAPSVRNRNPARHRSHLHHRSSSLNQTPSVKLITSFNNFSNSPSSAAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            SS+   TLKP  P  + +  +L  +KP  ++         LKS    S P      S    +P +    L H   S N T  + +   F  +      A AKRFDYIE+LLE QK LPQSR EGFV+RIITLYG AGM++HAL+TFY+M  F+C  TVKSFNA LNV   +R F E+ +FL+EV  RF+I+L VYSVNIAVKAFCE +K +EAYLFM+ C NNK  KPD V
Sbjct:   38 SSTAIKTLKPSKPALEVLKSDLEPSKPALEV---------LKSEWVPSKPALEALKS--EWDPHK----LFHIFKS-NATNPIVVENRFAFYDTVSRLAGAKRFDYIEQLLEQQKKLPQSRREGFVVRIITLYGNAGMIQHALNTFYQMGDFRCVRTVKSFNATLNVLAKSRDFDEISRFLNEVPRRFDIRLDVYSVNIAVKAFCEAEKLKEAYLFMLDCVNNKGVKPDVV 252

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396JNA0|A0A396JNA0_MEDTR (Putative pentatricopeptide OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0332901 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.128e-54
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A AKRFDYIE+LLE QK LPQSR EGFV+RIITLYG AGM++HAL+TFY+M  F+C  TVKSFNA LNV   +R F E+ +FL+EV  RF+I+L VYSVNIAVKAFCE +K +EAYLFM+ C NNK  KPD V
Sbjct:  101 AGAKRFDYIEQLLEQQKKLPQSRREGFVVRIITLYGNAGMIQHALNTFYQMGDFRCVRTVKSFNATLNVLAKSRDFDEISRFLNEVPRRFDIRLDVYSVNIAVKAFCEAEKLKEAYLFMLDCVNNKGVKPDVV 233

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4PGC2|A0A6A4PGC2_LUPAL (Putative pentatricopeptide OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0373751 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.012e-48
Identity = 84/133 (63.16%), Postives = 102/133 (76.69%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A AKRFD+IE LLEHQK LPQ R EGF++RIITLYGKAGM  HA+ TF+++H F+CR TVKSFNA LNV    R F+ ++ FL E  + F+I+L VYSVNIAVKAFC+  K QEAYLFM+  ENN + KPD +
Sbjct:   70 AGAKRFDHIENLLEHQKTLPQGRREGFMVRIITLYGKAGMTNHAVKTFHDLHLFRCRRTVKSFNATLNVLSKTRDFYSILLFLREAQT-FDIRLDVYSVNIAVKAFCQLGKLQEAYLFMLGSENNAI-KPDVI 200

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1R6M4|A0A4P1R6M4_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_30132 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.142e-48
Identity = 86/133 (64.66%), Postives = 101/133 (75.94%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A AKRFD+IE LLEHQK LPQ R EGF++RIITLYGKAGM  HA+ TF+++H F+CR TVKSFNAALNV    R F  ++ FL E   RF+I++ VYSVNIAVKAFCE  K QEAYLFM   ENN + KPD +
Sbjct:   72 AGAKRFDHIENLLEHQKTLPQGRREGFMVRIITLYGKAGMTDHAVKTFHDLHLFRCRRTVKSFNAALNVLSKTRDFDSILLFLREAQ-RFDIRVDVYSVNIAVKAFCELGKLQEAYLFMSDSENNAI-KPDVI 202

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4MPY2|A0A6A4MPY2_LUPAL (Putative pentatricopeptide OS=Lupinus albus OX=3870 GN=Lal_00009957 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.705e-48
Identity = 86/133 (64.66%), Postives = 100/133 (75.19%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A AKRFDYI  LLE QK LPQ R EGF++RIITLYGKAGM+RHA+ TF+++H F+CR TVKSFNAALNV    R F  +VKFL E   RF+I++ V S NIAVKAFCE  K QEAYLFM+  ENN +  PD V
Sbjct:   73 AGAKRFDYIHNLLEQQKTLPQGRREGFMVRIITLYGKAGMIRHAVKTFHDLHLFRCRRTVKSFNAALNVLSKTRDFDLIVKFLGEAQ-RFDIRIDVCSANIAVKAFCELGKLQEAYLFMLESENNGI-IPDVV 203

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7H8A9|A0A1J7H8A9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_16299 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.171e-48
Identity = 85/133 (63.91%), Postives = 99/133 (74.44%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A AKRFDYIE LLE QKALPQ R EGF++RII LYGKAGM+ HA+ TF ++H F+CR TVKSFNAALNV    R F  +V+FL E   RF+I++ V S NIAVKAFCE  K QEAYLFM+  ENN +  PD V
Sbjct:   70 AGAKRFDYIENLLEQQKALPQGRREGFMVRIIMLYGKAGMINHAVKTFRDLHLFRCRRTVKSFNAALNVLSKTRDFDSIVRFLGEA-GRFDIRIDVCSANIAVKAFCESGKLQEAYLFMLESENNGI-TPDVV 200

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5NRR0|A0A6A5NRR0_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045361 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.188e-47
Identity = 99/210 (47.14%), Postives = 126/210 (60.00%), Query Frame = 0

Query:   45 LPSTKPPPQLQFHLQSFIQLKSPTFSSYPTFTQAPSVRNRNPARHRSHLHHRSSSLNQTPSVKLITSFNNFSNSPSSAAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            + S +PP       + F Q  S   +  P+  Q P++      R    L H     N T  + +   F         A AKRFD+IE LLEHQK LPQ R EGF++RIITLYGKAGM  HA+ TF+++H F+CR TVKSFNA LNV    R F+ ++ FL E  + F+I+L VYSVNIAVKAFC+  K QEAYLFM+  ENN + KPD +
Sbjct:    1 MLSLRPP-------RIFRQFSSAATTPTPSPLQPPALHKLKFERDPDKLFH-LFQFNATNRLLVENRFAFDDTVSRLAGAKRFDHIENLLEHQKTLPQGRREGFMVRIITLYGKAGMTNHAVKTFHDLHLFRCRRTVKSFNATLNVLSKTRDFYSILLFLREAQT-FDIRLDVYSVNIAVKAFCQLGKLQEAYLFMLGSENNAI-KPDVI 200

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1AZZ7|A0A6J1AZZ7_9ROSI (pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Herrania umbratica OX=108875 GN=LOC110422763 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.611e-44
Identity = 79/134 (58.96%), Postives = 96/134 (71.64%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVG-KPDAV 254
            A A+RFDYIE LLEHQK LPQ R EGF++RII LYGKAGM++HALDTFY+MH + C  TVKSFNAAL V +       +  FL +V  +FN++L  YSVNIA KAFCE D  + AYL MV  E  K+G +PD +
Sbjct:   81 AGARRFDYIEHLLEHQKTLPQGRREGFIMRIIMLYGKAGMIKHALDTFYDMHLYGCERTVKSFNAALKVLIQTHDVRAIEAFLSDVPQKFNVELDTYSVNIATKAFCEMDFLERAYLVMV--EMEKLGIRPDVI 212

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8GW57|PP134_ARATH (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.809e-35
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A A R D+IE LLEHQK LPQ R EGF++RII LYGKAGM + ALDTF+ M  + C+ +VKSFNAAL V   N   H + +FL +  S++ I +   S NIA+K+FCE      AY+ M   E + +  PD V
Sbjct:   82 AGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGL-TPDVV 213

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LG23|PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.298e-21
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 0

Query:  123 AAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            AAKR  Y+E++LE QK       EGF  RII+LYGKAGM  +A   F EM    C+ +V SFNA L+    +++F  V +  +E+  + +IK  + S N  +KA CE D   EA   +   EN  + KPD V
Sbjct:   86 AAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGL-KPDIV 216

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LK57|PP226_ARATH (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g13160 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.958e-21
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            AAAK+F+++E++LE Q   P    EGFV RII LYG+ GM  +A   F EM    C+ T  SFNA LN  V++++F  V     E+  + +I+  V S N  +K  C    F EA   +   EN  + KPD +
Sbjct:   82 AAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGL-KPDHI 213

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LK58|PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX=3702 GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.449e-18
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 0

Query:  124 AKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVG-KPDAVLVELAKEVGADAVYAHREVSHEEEKIEGVMEKESIS 290
            AK+F  I+++L++QK     +SE FVIRI+ LYG +GM  HA   F EM    C  TVKSFNA L+  V++++  E +K   E+  +  I   + + N  +KA C      +  +  ++ E  K G +PD +      E      +  RE+  E ++I  +M+ +++S
Sbjct:  100 AKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDD--ILSIFEELEKNGFEPDLISFNTLLE-----EFYRRELFVEGDRIWDLMKSKNLS 260

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LB72|PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana OX=3702 GN=PHR2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 9.490e-12
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 0

Query:  247 KVGKPDAVLVELAKEVGADAVYAHREVSHEEEKIEG----VMEKESIS----------HITNI---IINLPSTVAAY 306
            +VGKP+AVLVELAKE+GADAVYAHREVSH+E K EG     M++E +           H+ ++   I +LPS   A+
Sbjct:  193 RVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAF 269

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.030e-11
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFN-IKLYVYSVNIAVKAFCEGDKFQEAYLFM 240
            A  +RF  IE L+E  K  P+ + E F   +I  YG+A M  HA+ TF +M  +    +  SFNA LN  + ++ F +V +  DE+  R+N I     S  I +K++C+    ++A   M
Sbjct:   78 AKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIM 197

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9ZU67|PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g18520 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.119e-10
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRF-NIKLYVYSVNIAVKAFCEGDKFQEAYLFM 240
            A ++RF  IE L+E  K  P+ ++E F+  +I  YG+A M  HA+  F EM       TV SFNA L   + +  F  V +  DE   R+ NI     S  + +K++C+  K ++A   M
Sbjct:   78 AKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIM 197

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT1G80150.2 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:30148738-30149804 FORWARD LENGTH=323 | 201606)

HSP 1 Score: 135.961 bits (341), Expect = 3.210e-37
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A A R D+IE LLEHQK LPQ R EGF++RII LYGKAGM + ALDTF+ M  + C+ +VKSFNAAL V   N   H + +FL +  S++ I +   S NIA+K+FCE      AY+ M   E + +  PD V
Sbjct:   82 AGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGL-TPDVV 213

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT1G80150.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:30148738-30149931 FORWARD LENGTH=397 | 201606)

HSP 1 Score: 135.576 bits (340), Expect = 1.851e-36
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            A A R D+IE LLEHQK LPQ R EGF++RII LYGKAGM + ALDTF+ M  + C+ +VKSFNAAL V   N   H + +FL +  S++ I +   S NIA+K+FCE      AY+ M   E + +  PD V
Sbjct:   82 AGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGL-TPDVV 213

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT1G55890.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:20901364-20902560 FORWARD LENGTH=398 | 201606)

HSP 1 Score: 97.0561 bits (240), Expect = 2.351e-22
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 0

Query:  123 AAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            AAKR  Y+E++LE QK       EGF  RII+LYGKAGM  +A   F EM    C+ +V SFNA L+    +++F  V +  +E+  + +IK  + S N  +KA CE D   EA   +   EN  + KPD V
Sbjct:   86 AAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGL-KPDIV 216

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT3G13160.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr3:4229994-4231178 REVERSE LENGTH=394 | 201606)

HSP 1 Score: 95.1301 bits (235), Expect = 9.165e-22
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGKPDAV 254
            AAAK+F+++E++LE Q   P    EGFV RII LYG+ GM  +A   F EM    C+ T  SFNA LN  V++++F  V     E+  + +I+  V S N  +K  C    F EA   +   EN  + KPD +
Sbjct:   82 AAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGL-KPDHI 213

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT3G13150.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr3:4227975-4229630 REVERSE LENGTH=551 | 201606)

HSP 1 Score: 88.5817 bits (218), Expect = 3.529e-19
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 0

Query:  124 AKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVG-KPDAVLVELAKEVGADAVYAHREVSHEEEKIEGVMEKESIS 290
            AK+F  I+++L++QK     +SE FVIRI+ LYG +GM  HA   F EM    C  TVKSFNA L+  V++++  E +K   E+  +  I   + + N  +KA C      +  +  ++ E  K G +PD +      E      +  RE+  E ++I  +M+ +++S
Sbjct:  100 AKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDD--ILSIFEELEKNGFEPDLISFNTLLE-----EFYRRELFVEGDRIWDLMKSKNLS 260

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT2G47590.1 (| photolyase/blue-light receptor 2 | Chr2:19521888-19523732 FORWARD LENGTH=447 | 201606)

HSP 1 Score: 68.9366 bits (167), Expect = 9.709e-13
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 0

Query:  247 KVGKPDAVLVELAKEVGADAVYAHREVSHEEEKIEG----VMEKESIS----------HITNI---IINLPSTVAAY 306
            +VGKP+AVLVELAKE+GADAVYAHREVSH+E K EG     M++E +           H+ ++   I +LPS   A+
Sbjct:  193 RVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAF 269

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT4G36680.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr4:17292479-17293717 REVERSE LENGTH=412 | 201606)

HSP 1 Score: 67.0106 bits (162), Expect = 4.123e-12
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRFN-IKLYVYSVNIAVKAFCEGDKFQEAYLFM 240
            A  +RF  IE L+E  K  P+ + E F   +I  YG+A M  HA+ TF +M  +    +  SFNA LN  + ++ F +V +  DE+  R+N I     S  I +K++C+    ++A   M
Sbjct:   78 AKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIM 197

[Close]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Match: AT2G18520.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr2:8034036-8035292 REVERSE LENGTH=418 | 201606)

HSP 1 Score: 65.4698 bits (158), Expect = 1.145e-11
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 0

Query:  122 AAAKRFDYIEKLLEHQKALPQSRSEGFVIRIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEVVKFLDEVHSRF-NIKLYVYSVNIAVKAFCEGDKFQEAYLFM 240
            A ++RF  IE L+E  K  P+ ++E F+  +I  YG+A M  HA+  F EM       TV SFNA L   + +  F  V +  DE   R+ NI     S  + +K++C+  K ++A   M
Sbjct:   78 AKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIM 197

The following BLAST results are available for this feature:

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A2K3NQV8\|A0A2K3NQV8_TRIPR	1.877e-60	59.78	Pentatricopeptide repeat-containing protein OS=Tri...	[more]
tr\|A0A1S2XEE8\|A0A1S2XEE8_CICAR	4.530e-56	61.69	pentatricopeptide repeat-containing protein At1g80...	[more]
tr\|Q2HUC1\|Q2HUC1_MEDTR	3.182e-55	49.35	PPR containing plant-like protein OS=Medicago trun...	[more]
tr\|A0A396JNA0\|A0A396JNA0_MEDTR	1.128e-54	68.42	Putative pentatricopeptide OS=Medicago truncatula ...	[more]
tr\|A0A6A4PGC2\|A0A6A4PGC2_LUPAL	3.012e-48	63.16	Putative pentatricopeptide OS=Lupinus albus OX=387...	[more]
tr\|A0A4P1R6M4\|A0A4P1R6M4_LUPAN	5.142e-48	64.66	Uncharacterized protein OS=Lupinus angustifolius O...	[more]
tr\|A0A6A4MPY2\|A0A6A4MPY2_LUPAL	5.705e-48	64.66	Putative pentatricopeptide OS=Lupinus albus OX=387...	[more]
tr\|A0A1J7H8A9\|A0A1J7H8A9_LUPAN	6.171e-48	63.91	Uncharacterized protein OS=Lupinus angustifolius O...	[more]
tr\|A0A6A5NRR0\|A0A6A5NRR0_LUPAL	4.188e-47	47.14	Uncharacterized protein OS=Lupinus albus OX=3870 G...	[more]
tr\|A0A6J1AZZ7\|A0A6J1AZZ7_9ROSI	3.611e-44	58.96	pentatricopeptide repeat-containing protein At1g80...	[more]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 7


Match Name	E-value	Identity	Description
sp\|Q8GW57\|PP134_ARATH	1.809e-35	49.62	Pentatricopeptide repeat-containing protein At1g80...	[more]
sp\|Q9LG23\|PPR82_ARATH	2.298e-21	40.91	Pentatricopeptide repeat-containing protein At1g55...	[more]
sp\|Q9LK57\|PP226_ARATH	8.958e-21	39.10	Pentatricopeptide repeat-containing protein At3g13...	[more]
sp\|Q9LK58\|PP225_ARATH	3.449e-18	32.14	Pentatricopeptide repeat-containing protein At3g13...	[more]
sp\|Q8LB72\|PHR2_ARATH	9.490e-12	49.35	Blue-light photoreceptor PHR2 OS=Arabidopsis thali...	[more]
sp\|Q9M065\|PP352_ARATH	4.030e-11	33.33	Pentatricopeptide repeat-containing protein At4g36...	[more]
sp\|Q9ZU67\|PP162_ARATH	1.119e-10	34.17	Pentatricopeptide repeat-containing protein At2g18...	[more]

BLAST of Vfaba.Tiffany.R1.5g136160.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 8


Match Name	E-value	Identity	Description
AT1G80150.2	3.210e-37	49.62	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT1G80150.1	1.851e-36	49.62	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT1G55890.1	2.351e-22	40.91	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT3G13160.1	9.165e-22	39.10	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT3G13150.1	3.529e-19	32.14	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT2G47590.1	9.709e-13	49.35	\| photolyase/blue-light receptor 2 \| Chr2:19521888...	[more]
AT4G36680.1	4.123e-12	33.33	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT2G18520.1	1.145e-11	34.17	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 86..299 e-value: 9.1E-14 score: 53.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 152..176 e-value: 0.0077 score: 16.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 152..178 e-value: 4.8E-4 score: 18.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR47936	PPR_LONG DOMAIN-CONTAINING PROTEIN	coord: 61..239

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1180365715..1180367680-

mRNA sequence

>Vfaba.Tiffany.R1.5g136160.1_tif_v1 ID=Vfaba.Tiffany.R1.5g136160.1_tif_v1; Name=Vfaba.Tiffany.R1.5g136160.1; organism=Vicia faba; type=mRNA; length=972bp
ATGTGCAGAGACAAGTCTGAATCAAGAGCATCAGGTGTCGCGCCTCAATT
AAGCATCAAACCTCCCTCTCGCTGTTCATCTTCAACACAAACAACATTAA
AACCTCCATTCTGCGATACCGTCGACTTCAATCTTCCTTCCACTAAACCA
CCACCGCAACTTCAATTTCATCTTCAATCTTTCATTCAACTTAAATCACC
CACCTTCTCCTCATACCCAACCTTCACACAAGCTCCCTCTGTTCGAAACC
GTAACCCAGCGCGCCACCGTTCTCATCTTCATCACCGGTCTTCCTCTCTC
AACCAAACACCATCCGTGAAGCTCATCACCTCCTTCAACAACTTCAGCAA
CTCACCTTCTTCCGCCGCCGCTAAACGCTTCGACTACATCGAGAAACTAC
TCGAACACCAGAAAGCGTTGCCGCAGTCCCGCAGCGAAGGCTTCGTCATT
CGGATTATCACCTTGTATGGGAAGGCTGGTATGGTTCGTCACGCGCTTGA
TACTTTTTATGAAATGCATTGTTTTAAATGCCGTACAACTGTTAAATCTT
TCAATGCCGCGCTTAATGTTTCGGTTTCCAATCGGAGATTTCATGAGGTT
GTTAAGTTTTTAGATGAGGTTCACTCTAGGTTTAATATTAAATTATATGT
TTATTCTGTTAACATTGCTGTTAAGGCCTTTTGTGAAGGTGACAAGTTTC
AAGAGGCTTATTTGTTTATGGTTTATTGTGAGAATAATAAAGTTGGGAAG
CCGGATGCTGTTTTGGTTGAATTGGCTAAGGAAGTTGGGGCGGATGCGGT
TTATGCTCACAGAGAGGTTTCTCATGAGGAGGAGAAGATTGAGGGTGTGA
TGGAAAAGGAGAGTATTTCTCACATCACAAACATTATCATCAATCTTCCG
TCAACAGTAGCAGCTTACGTACGCGAGCGGTATTCCACCAATCCTACAGC
AACTTCAACACCTTTGCTTTGA

protein sequence of Vfaba.Tiffany.R1.5g136160.1_tif_v1

>Vfaba.Tiffany.R1.5g136160.1_tif_v1 ID=Vfaba.Tiffany.R1.5g136160.1_tif_v1; Name=Vfaba.Tiffany.R1.5g136160.1_tif_v1; organism=Vicia faba; type=polypeptide; length=323bp
MCRDKSESRASGVAPQLSIKPPSRCSSSTQTTLKPPFCDTVDFNLPSTKP
PPQLQFHLQSFIQLKSPTFSSYPTFTQAPSVRNRNPARHRSHLHHRSSSL
NQTPSVKLITSFNNFSNSPSSAAAKRFDYIEKLLEHQKALPQSRSEGFVI
RIITLYGKAGMVRHALDTFYEMHCFKCRTTVKSFNAALNVSVSNRRFHEV
VKFLDEVHSRFNIKLYVYSVNIAVKAFCEGDKFQEAYLFMVYCENNKVGK
PDAVLVELAKEVGADAVYAHREVSHEEEKIEGVMEKESISHITNIIINLP
STVAAYVRERYSTNPTATSTPLL

mRNA from alignment at chr5:1180365715..1180367680-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vfaba.Tiffany.R1.5g136160.1_tif_v1 ID=Vfaba.Tiffany.R1.5g136160.1_tif_v1; Name=Vfaba.Tiffany.R1.5g136160.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1180365715..1180367680- (Vicia faba

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

Vfaba.Tiffany.R1.5g136160.1