evm.model.Chr07.591

Transcript Overview
Nameevm.model.Chr07.591
Unique Nameevm.model.Chr07.591_hau_v1
TypemRNA
OrganismVigna unguiculata subsp. sesquipedalis ()
Sequence length636
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:5777993..5780676 -Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvuaL0276Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0457Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0649Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0804Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuaL061Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvuaL1012Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL1087Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuaL245Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuaL354Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuaL613Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavuaL297Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuaL0672Cajanus cajan Asha genome v1.0Cajanus cajan
cavuaL544Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL610Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL652Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuaL528Pisum sativum Cameor genome v1aPisum sativum
psvuaL547Pisum sativum Cameor genome v1aPisum sativum
tifvuaL071Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaL244Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuaL170Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaL331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuaL401Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuaL360Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaL533Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vfhvuaL069Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuaL166Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuaL351Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuaL113Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL171Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL513Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL589Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vuavuaL116Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuavuaL161Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuavuaL198Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vssvuaL108Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuaL110Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaL116Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuaL188Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuaL236Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuazwsR427Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR448Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR479Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuvuaL371Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuaL721Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaL266Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuaL557Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuaL601Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan02g215000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_007598Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.007G066800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014657210.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun07g229300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_04670Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_04019Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
evm.TU.Chr07.591evm.TU.Chr07.591_hau_v1Vigna unguiculata subsp. sesquipedalisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr07.591_hau_v1evm.model.Chr07.591_hau_v1Vigna unguiculata subsp. sesquipedalispolypeptide
evm.model.Chr07.591_hau_v1evm.model.Chr07.591_hau_v1-proteinVigna unguiculata subsp. sesquipedalispolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr07.591.exon7evm.model.Chr07.591.exon7_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr07.591.exon6evm.model.Chr07.591.exon6_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr07.591.exon5evm.model.Chr07.591.exon5_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr07.591.exon4evm.model.Chr07.591.exon4_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr07.591.exon3evm.model.Chr07.591.exon3_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr07.591.exon2evm.model.Chr07.591.exon2_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr07.591.exon1evm.model.Chr07.591.exon1_hau_v1Vigna unguiculata subsp. sesquipedalisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1_7Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1_6Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1_5Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1_4Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1_3Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1_2Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr07.591cds.evm.model.Chr07.591_hau_v1Vigna unguiculata subsp. sesquipedalisCDS


Homology
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FJ98|RPD6A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.087e-66
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 0 
Query:    1 MADEDYDDMD-MGYEDEPPEPEIEEGAEEDLENK-NDELTGDPIDTGDKDE-EQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDY+D+D +GYEDEP EPEIEEG EED+E K ND++ G+PI+  DK E E V RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQ
Sbjct:    1 MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIVEDSWKRQ 140
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SJ96|RPB6B_ARATH (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.874e-62
Identity = 113/140 (80.71%), Postives = 126/140 (90.00%), Query Frame = 0 
Query:    1 MADEDYDDMD-MGYEDEPPEPEIEEGAEEDLENK-NDELTGDPIDTGDKDE-EQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MAD+DY+++D +GYEDEP EPEIEEG EED + K ND++  DP++T DK E E V RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQ
Sbjct:    1 MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIVEDSWKRQ 140
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|Q32PE0|RPAB2_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.066e-40
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 0 
Query:   28 EDLENKNDE--LTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 132
            +DLEN  +E  +  + + +G++   Q ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   23 DDLENAEEEGQVNVEILPSGERP--QANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|O88828|RPAB2_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.777e-40
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:   28 EDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 132
            +DLEN  +E   +       +  Q ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|P61219|RPAB2_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.777e-40
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:   28 EDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 132
            +DLEN  +E   +       +  Q ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|Q5R592|RPAB2_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo abelii OX=9601 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.208e-40
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:   28 EDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 132
            +DLEN  +E   +       +  Q ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|P61218|RPAB2_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens OX=9606 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.208e-40
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:   28 EDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 132
            +DLEN  +E   +       +  Q ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|P61217|RPAB2_CRIGR (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.208e-40
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:   28 EDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 132
            +DLEN  +E   +       +  Q ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|P20435|RPAB2_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPO26 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.700e-38
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:   56 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 131
            R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct:   79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Match: sp|Q24320|RPAB2_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Drosophila melanogaster OX=7227 GN=RpII18 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.133e-38
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 0 
Query:   56 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 133
            R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD SYEDW +DELI+ D+
Sbjct:   54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131
[Close]
BLAST of evm.model.Chr07.591 vs. Araport11
Match: AT5G51940.1 (| RNA polymerase Rpb6 | Chr5:21104679-21105796 FORWARD LENGTH=144 | 201606)

HSP 1 Score: 202.986 bits (515), Expect = 6.227e-67
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 0 
Query:    1 MADEDYDDMD-MGYEDEPPEPEIEEGAEEDLENK-NDELTGDPIDTGDKDE-EQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDY+D+D +GYEDEP EPEIEEG EED+E K ND++ G+PI+  DK E E V RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQ
Sbjct:    1 MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIVEDSWKRQ 140
[Close]
BLAST of evm.model.Chr07.591 vs. Araport11
Match: AT2G04630.1 (| RNA polymerase Rpb6 | Chr2:1619168-1620246 REVERSE LENGTH=144 | 201606)

HSP 1 Score: 194.126 bits (492), Expect = 1.918e-63
Identity = 113/140 (80.71%), Postives = 126/140 (90.00%), Query Frame = 0 
Query:    1 MADEDYDDMD-MGYEDEPPEPEIEEGAEEDLENK-NDELTGDPIDTGDKDE-EQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MAD+DY+++D +GYEDEP EPEIEEG EED + K ND++  DP++T DK E E V RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQ
Sbjct:    1 MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIVEDSWKRQ 140
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N380|A0A4D6N380_VIGUN (DNA-directed RNA polymerases I OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3260 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.418e-91
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SMY6|A0A0S3SMY6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G075800 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 5.951e-90
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDT DK+EEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTEDKEEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TZP1|A0A0L9TZP1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g215000 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 8.639e-90
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDT DK+EEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:   47 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTEDKEEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 183
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V2X1|A0A1S3V2X1_VIGRR (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Vigna radiata var. radiata OX=3916 GN=LOC106771260 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.838e-89
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MAD+DYD+MDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDT DK+EEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADDDYDEMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTEDKEEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
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BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A5N5KCA1|A0A5N5KCA1_9ROSI (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_023186 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.288e-75
Identity = 119/139 (85.61%), Postives = 131/139 (94.24%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDEL-TGDPIDTGDKDEEQ-VDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MAD++Y+D+DMGYEDEP EPEIEEGA+ED EN N+E  TG+PI+T DK+E+  V+RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADDEYNDIDMGYEDEPAEPEIEEGADEDAENNNNEDDTGEPIETEDKEEQAPVERPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 139
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|B9ID35|B9ID35_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G138800 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.549e-75
Identity = 119/139 (85.61%), Postives = 131/139 (94.24%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDEL-TGDPIDTGDKDEEQ-VDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MAD++Y+D+DMGYEDEP EPEIEEGA+ED EN N+E  TG+PI+T DK+E+  V+RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADDEYNDVDMGYEDEPAEPEIEEGADEDAENNNNEDDTGEPIETEDKEEQAPVERPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 139
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|V7BEN4|V7BEN4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G066800g PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.312e-72
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQV-DRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDYDDMDMGYE EPPEPEIEEGAEEDLENKN+ELTGDPIDT DK+EEQ  +RPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADEDYDDMDMGYEHEPPEPEIEEGAEEDLENKNEELTGDPIDTEDKEEEQQGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 138
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V1H5|A0A1S3V1H5_VIGRR (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Vigna radiata var. radiata OX=3916 GN=LOC106770877 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.422e-71
Identity = 126/139 (90.65%), Postives = 133/139 (95.68%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLEN-KNDELTGDPIDTGDKDEEQ-VDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDYDDMDMGYEDEP EPEIEEGAEED++N KND++ GD IDT DK+EEQ V+RPRKTSKYMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADEDYDDMDMGYEDEPLEPEIEEGAEEDVDNNKNDDVAGDAIDTEDKEEEQPVERPRKTSKYMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 139
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|V7BA71|V7BA71_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G009900g PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.512e-71
Identity = 128/138 (92.75%), Postives = 133/138 (96.38%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQ-VDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MADEDYDDMDMGYEDEP EPEIEEGAEED+ENKNDE+ GD IDT DK+EEQ V+RPRKTSKYMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADEDYDDMDMGYEDEPIEPEIEEGAEEDVENKNDEMVGDAIDTEDKEEEQPVERPRKTSKYMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 138
[Close]
BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Match: tr|A0A445IRY7|A0A445IRY7_GLYSO (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Glycine soja OX=3848 GN=D0Y65_027959 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.772e-71
Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 0 
Query:    1 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEEQ-VDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 137
            MAD+DY+D+DMGYEDEPPEPEIEEGAEEDLENKNDELTG+PIDT DK+EEQ V+RPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
Sbjct:    1 MADDDYEDIDMGYEDEPPEPEIEEGAEEDLENKNDELTGEPIDTEDKEEEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 138
The following BLAST results are available for this feature:
BLAST of evm.model.Chr07.591 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9FJ98|RPD6A_ARATH6.087e-6682.86DNA-directed RNA polymerases II, IV and V subunit ... [more]
sp|Q9SJ96|RPB6B_ARATH1.874e-6280.71DNA-directed RNA polymerases II and V subunit 6B O... [more]
sp|Q32PE0|RPAB2_BOVIN1.066e-4066.36DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|O88828|RPAB2_RAT1.777e-4066.67DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P61219|RPAB2_MOUSE1.777e-4066.67DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|Q5R592|RPAB2_PONAB2.208e-4066.67DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P61218|RPAB2_HUMAN2.208e-4066.67DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P61217|RPAB2_CRIGR2.208e-4066.67DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P20435|RPAB2_YEAST7.700e-3881.58DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|Q24320|RPAB2_DROME8.133e-3875.64DNA-directed RNA polymerases I, II, and III subuni... [more]
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BLAST of evm.model.Chr07.591 vs. Araport11
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G51940.16.227e-6782.86| RNA polymerase Rpb6 | Chr5:21104679-21105796 FOR... [more]
AT2G04630.11.918e-6380.71| RNA polymerase Rpb6 | Chr2:1619168-1620246 REVER... [more]
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BLAST of evm.model.Chr07.591 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6N380|A0A4D6N380_VIGUN1.418e-91100.00DNA-directed RNA polymerases I OS=Vigna unguiculat... [more]
tr|A0A0S3SMY6|A0A0S3SMY6_PHAAN5.951e-9098.54Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9TZP1|A0A0L9TZP1_PHAAN8.639e-9098.54Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A1S3V2X1|A0A1S3V2X1_VIGRR9.838e-8997.08DNA-directed RNA polymerases II, IV and V subunit ... [more]
tr|A0A5N5KCA1|A0A5N5KCA1_9ROSI3.288e-7585.61Uncharacterized protein OS=Salix brachista OX=2182... [more]
tr|B9ID35|B9ID35_POPTR3.549e-7585.61Uncharacterized protein OS=Populus trichocarpa OX=... [more]
tr|V7BEN4|V7BEN4_PHAVU2.312e-7294.93Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A1S3V1H5|A0A1S3V1H5_VIGRR1.422e-7190.65DNA-directed RNA polymerases II, IV and V subunit ... [more]
tr|V7BA71|V7BA71_PHAVU2.512e-7192.75Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A445IRY7|A0A445IRY7_GLYSO2.772e-7194.20DNA-directed RNA polymerases II, IV and V subunit ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0
Date Performed: 2023-06-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 58..109
e-value: 2.2E-13
score: 50.0
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 2..132
e-value: 5.5E-50
score: 170.6
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 4..131
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..132
e-value: 1.2E-55
score: 180.1
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..132
e-value: 7.7E-50
score: 161.1
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Rpo6coord: 60..115
score: 18.725954
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availablePANTHERPTHR47227DNA-DIRECTED RNA POLYMERASE SUBUNIT Kcoord: 1..131

Sequences
The following sequences are available for this feature:

mRNA sequence

>evm.model.Chr07.591_hau_v1 ID=evm.model.Chr07.591_hau_v1; Name=evm.model.Chr07.591; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=636bp
ATGGCCGACGAAGACTATGATGACATGGACATGGGGTACGAGGATGAGCC
ACCAGAGCCTGAGATTGAGGAAGGTGCGGAGGAGGATTTGGAAAACAAAA
ATGACGAATTAACTGGAGATCCTATTGACACCGGGGATAAGGACGAGGAA
CAAGTGGACCGCCCTCGAAAGACGTCGAAATATATGACTAAGTATGAGCG
TGCTAGGATTTTGGGCACCCGAGCTCTTCAAATCAGTATGAATGCACCTG
TCATGGTCGAATTGGAGGGGGAAACTGATCCACTTGAGATTGCTATGAAG
GAACTCCGTGAGCGTAAAATACCCTTTACAATCCGGCGTTACTTGCCTGA
TGGAAGCTACGAGGATTGGGGAGTTGATGAACTGATCGTGGAAGACTCCT
GGAAGAGGCAAAAACCAACAACTGATGTAGTTTATTTTGCAGAGGATTTT
GGGCTTTTGGGCCGTTATTATGGACTATGCTCTGAATCAGAAATAACAAT
GGTATTGGCAAACAACACATTATTGTTAGAGATCTCTTCGCTTGACTGTC
CTAAGAACAGTGCATGGCTTAGTTTTTCTAGCAAAACCAATGGTGTACTG
TTACTCCCCATGCATGGTGCTGATGGATTAGGATGA
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protein sequence of evm.model.Chr07.591_hau_v1

>evm.model.Chr07.591_hau_v1 ID=evm.model.Chr07.591_hau_v1; Name=evm.model.Chr07.591_hau_v1; organism=Vigna unguiculata subsp. sesquipedalis; type=polypeptide; length=211bp
MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTGDKDEE
QVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMK
ELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQKPTTDVVYFAEDF
GLLGRYYGLCSESEITMVLANNTLLLEISSLDCPKNSAWLSFSSKTNGVL
LLPMHGADGLG
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mRNA from alignment at Chr07:5777993..5780676-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>evm.model.Chr07.591_hau_v1 ID=evm.model.Chr07.591_hau_v1; Name=evm.model.Chr07.591; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=2684bp; location=Sequence derived from: Chr07:5777993..5780676- (Vigna unguiculata subsp. sesquipedalis
ATGGCCGACGAAGACTATGATGACATGGACATGGGGTTCTCTCTCTTTCT
CTCTACTTTAATGTCTCACTCATTTGCACTCACGGACTAACTAGGATTTT
ACCAAATCAATTTGTGTATTGAAATTAGGGTTTATGGAAAGCTGTAGTAG
TTTTTTTTTTTTTTTTTTTGTGTGAATATTCAAGCGTGTGTTGTAACCTG
CGTATTTCTATTGAATGATTTCAAATGCTCATATGTGGTGTTTGATGATC
ACATTTGTCTTTTTCTTCCAAGAGTCCGCCAATAAAATATGTTTCATGCT
TCAATTGCAGAGATAGAGTTTGTTTTGTAACCTGTTTATTTCTATTGAAT
GATTTTCATTGATTAAAGTGTGCTCATACAGGTACGAGGATGAGCCACCA
GAGCCTGAGATTGAGGTAAATAATTCTGTCTTGTGTCCTTGTTTTTGTTT
ATTCAGCTGATATATGTTGTTGGATGAATTTATGGAATTATTCATTTGCA
GGAAGGTGCGGAGGAGGATTTGGAAAACAAAAATGACGAATTAACTGGAG
ATCCTATTGACACCGGGGATAAGGACGAGGAACAAGTGGACCGCCCTCGA
AAGACGTCGAAATATATGACTAAGTATGAGCGTGCTAGGATTTTGGGCAC
CCGAGCTCTTCAAATCAGGTTTGGTTCAGGACTTTGTTAGCTTAAGATTT
TGCTTATTAGTTATTTCTAACATGTTACCATTCTTCTGGCTGAACAGTAT
GAATGCACCTGTCATGGTCGAATTGGAGGGGGAAACTGATCCACTTGAGG
TATTTTCTTTTTCTCTTTGCAATTGATAACTTGTTTTGGTTAAGTTATTG
TTTTTGAGCTCACTGATTATTTCATTGCTAAATTTGTAGTTTTTAATTTT
CAAATATACGTCAGTTTGACCTTATTTTCTTGAAATATTTCATTTAACTA
CTTTGGTGATCACCTGGTTCCTTGATTGAATGGGGTGTTCTTGAAATTTG
GTTTAATACGGAACCCCGCAGTTGCACAGATGTGCTGCATGAATAACAGA
ATAAATTATGCCATTGTAATATATTCTTTGTAATTTATATTTAATAGAGA
TTCCTAACCTGGGAAGAACAATTTACATAGGAAATATTATAGTTATAACT
TTTTAATCTGCTTGTTGATTACTTTCCCCAATTATAGCTTGCCTTTCTTT
GCCTCTAGCTCCCTTTAAGAAAAAGTTATCGGTGCTGGGCATAACTGAGA
TTGGTTTATTATTTAATTTGACAATGACATACTCTTTTTAATATTTGGTT
ATTTAGTTTAATTATTTATTAAGTCTCTACCTGCACAATATCTACTTCCG
GCGCTAAACTATTAACCTAAACTGACTAGTAATACGAACTGATTCAGTCT
TAAAATATTGAATCAGTCATATGTTCATTTAGGATTTTACATAATCTCCT
TTAGGCGAGACTGTACTGTGGCAGTGAAGTTTTTTATTCTAAAGCTCTTT
GGTTCCTGAAGAGTGCATTGTGCACACCATTCCAGGAATAAGTTGATTAT
ATAGTCTCTGATTTTTATTGACCAATAAGAACCTGTGCAATATTGTCTAT
TTTACGGCTTACTTATTGAGCAATTTACTTGCCATGAATATACATTGAGC
TTTTTCTTTTCATGGCAATTATCCCAAATGTTTGATTCATGCGCTATACA
TGTTTTGTTTGTAAGCTGTTATATAACATGTAACATCGTGTTCTCCATAT
GTCAGATTGCTATGAAGGAACTCCGTGAGCGTAAAATACCCTTTACAATC
CGGCGTTACTTGCCTGATGGAAGGTAGATACTTTCCATTATACAAGTTAG
GTAGTTCCTTTTATGCCATACTTACTATTATTGTTCACAATTCCTGCAGC
TACGAGGATTGGGGAGTTGATGAACTGATCGTGGAAGACTCCTGGAAGAG
GCAAGTAGGTGGTGATTAATGGTTGAACTGACATGCTTAGAGAGGAGTAA
CGGAGACTATATTTTGTGCCCTCCTAACTTCTATATTTGATTTGTCACGT
TTGATAGTTGATACTGATCTAGGATTCCGCCACCTTGAAAACTTGCTTAG
TTCCTGCTACTTGTGCTTATAACGACGTATTAGTTTTGGGTTCCTGCTAC
TTGTGCTTTTGAGCTTAGTTCTAACTTGTATAAGGGACAGTTGTGCTATC
GTGTTTTCTTGCTCTGATAAAACAGAGAAGTGTTTGTCTAATCCACTACT
AGAACGATTAAGTTGTGGATTTGGATATTTCCATTAACACCTATATGATC
AGAAGTAACAGATAGTTGTGCAGGAAAGAGTTTATTTTTCTTAAAGGCTA
AAACAGTAATAATCTATGACAGAATATTAAATTTTAGTATGGAAAGCAAA
TGAGAAATGTAGGCGCTAACGCACTCTGTATGAAGCTGTATTGAGGTTAT
TGGGGGTAGAAACCAACAACTGATGTAGTTTATTTTGCAGAGGATTTTGG
GCTTTTGGGCCGTTATTATGGACTATGCTCTGAATCAGAAATAACAATGG
TATTGGCAAACAACACATTATTGTTAGAGATCTCTTCGCTTGACTGTCCT
AAGAACAGTGCATGGCTTAGTTTTTCTAGCAAAACCAATGGTGTACTGTT
ACTCCCCATGCATGGTGCTGATGGATTAGGATGA
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Coding sequence (CDS) from alignment at Chr07:5777993..5780676-

>evm.model.Chr07.591_hau_v1 ID=evm.model.Chr07.591_hau_v1; Name=evm.model.Chr07.591; organism=Vigna unguiculata subsp. sesquipedalis; type=CDS; length=636bp; location=Sequence derived from: Chr07:5777993..5780676- (Vigna unguiculata subsp. sesquipedalis
ATGGCCGACGAAGACTATGATGACATGGACATGGGGTACGAGGATGAGCC
ACCAGAGCCTGAGATTGAGGAAGGTGCGGAGGAGGATTTGGAAAACAAAA
ATGACGAATTAACTGGAGATCCTATTGACACCGGGGATAAGGACGAGGAA
CAAGTGGACCGCCCTCGAAAGACGTCGAAATATATGACTAAGTATGAGCG
TGCTAGGATTTTGGGCACCCGAGCTCTTCAAATCAGTATGAATGCACCTG
TCATGGTCGAATTGGAGGGGGAAACTGATCCACTTGAGATTGCTATGAAG
GAACTCCGTGAGCGTAAAATACCCTTTACAATCCGGCGTTACTTGCCTGA
TGGAAGCTACGAGGATTGGGGAGTTGATGAACTGATCGTGGAAGACTCCT
GGAAGAGGCAAAAACCAACAACTGATGTAGTTTATTTTGCAGAGGATTTT
GGGCTTTTGGGCCGTTATTATGGACTATGCTCTGAATCAGAAATAACAAT
GGTATTGGCAAACAACACATTATTGTTAGAGATCTCTTCGCTTGACTGTC
CTAAGAACAGTGCATGGCTTAGTTTTTCTAGCAAAACCAATGGTGTACTG
TTACTCCCCATGCATGGTGCTGATGGATTAGGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/Rpo6/RPB6
IPR036161RPB6/omega-like_sf
IPR028363RPB6
IPR006111Rpo6/Rpb6
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351DNA-templated transcription
Vocabulary: Cellular Component
TermDefinition
GO:0005665RNA polymerase II, core complex
GO:0005634nucleus