jg2001.t1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VLB5|A0A072VLB5_MEDTR (Heat shock 22 kDa protein, putative OS=Medicago truncatula OX=3880 GN=25484355 PE=4 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 1.684e-93 Identity = 135/152 (88.82%), Postives = 140/152 (92.11%), Query Frame = 0 Query: 1 MFAKKLTTVNPFAKKRPQHVVVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIKG 152 MFAKK+T VNPFAKKR QH VVSSTPNVNTKKLWRLPHVFA+MLELPFPSDADVSIEET QFFRFVASCNK NIF++GGVRAHAIEILPGITKIVIKR DGGDV V G+QERR S VDLWRFRLPP TQPERVTAVCTGGKLVVTVPKIKG Sbjct: 1 MFAKKVTNVNPFAKKRSQHGVVSSTPNVNTKKLWRLPHVFAKMLELPFPSDADVSIEETSQFFRFVASCNKMNIFNAGGVRAHAIEILPGITKIVIKRIDGGDVAVVGQQERRSSLGVDLWRFRLPPWTQPERVTAVCTGGKLVVTVPKIKG 152
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NF94|A0A392NF94_9FABA (Uncharacterized protein OS=Trifolium medium OX=97028 GN=A2U01_0019012 PE=4 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 9.907e-91 Identity = 132/153 (86.27%), Postives = 141/153 (92.16%), Query Frame = 0 Query: 1 MFAKKLTTVNPFAKKRPQHVVVSSTPNVNTKK-LWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIKG 152 MFAKK+TTVNPFAKKR QH VVSSTPNVNTKK LWRLPHVFA+MLELPFPSDAD+SIEETPQFFRFVA CNK +IF++GGVRA AIEILPGITKIVIKRFDGGDV V G+QE+R S VDLWRFRLPP TQPERVTAVC+GGKLVVTVPKIKG Sbjct: 3 MFAKKVTTVNPFAKKRSQHGVVSSTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMSIFNAGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLVVTVPKIKG 155
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LLJ8|A0A2K3LLJ8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g035396 PE=4 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 1.420e-90 Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 0 Query: 1 MFAKKLTTVNPFAKKRPQHVVVSSTPNVNTKK-LWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIKG 152 MFAKK+TTVNPFAKKR QH VVS+TPNVNTKK LWRLPHVFA+MLELPFPSDAD+SIEETPQFFRFVA CNK NIF+ GGVRA AIEILPGITKIVIKRFDGGDV V G+QE+R S VDLWRFRLPP TQPERVTAVC+GGKLVVTVPKIKG Sbjct: 1 MFAKKVTTVNPFAKKRSQHGVVSTTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMNIFNDGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLVVTVPKIKG 153
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PMG2|A0A2Z6PMG2_TRISU (DUF4283 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_404510 PE=4 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 1.211e-82 Identity = 125/148 (84.46%), Postives = 134/148 (90.54%), Query Frame = 0 Query: 1 MFAKKLTTVNPFAKKRPQHVVVSSTPNVNTKK-LWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTV 147 MFAKK+TTVNPFAKKR QH VVSSTPNVNTKK LWRLPHVFA+MLELPFPSDAD+SIEETPQFFRFVA CNK NIF++GGVRA AIEILPGITKIVIKRFDGGDV V G+QE+R S VDLWRFRLPP TQPERVTAVC+GGKL V + Sbjct: 3 MFAKKVTTVNPFAKKRSQHGVVSSTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMNIFNAGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLSVLL 150
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XVR5|A0A1S2XVR5_CICAR (uncharacterized protein LOC101506081 OS=Cicer arietinum OX=3827 GN=LOC101506081 PE=4 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 4.605e-80 Identity = 124/153 (81.05%), Postives = 134/153 (87.58%), Query Frame = 0 Query: 1 MFAKKLTT-VNPFAKKRPQHVVVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIKG 152 MFAKK+T VNPFAKKR QH VVSSTP +KKLWRLPHVFA+ LELPFPSDADVSIEETPQFFRFVASC KTN+ + GGVRAHAIEILPGITKIVIKR DGGDV V G+++RR ++ VDLWRFRLPP TQPERVTAVCTG KLVVTVPK KG Sbjct: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKG 149
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LPL1|A0A445LPL1_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_003939 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 4.415e-60 Identity = 103/141 (73.05%), Postives = 111/141 (78.72%), Query Frame = 0 Query: 12 FAKKRPQHV-VVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIK 151 FAKKR QH VVSS P+ N KKL RLPHVFA++LELPFPSD DV +EETPQFFRFVASCN +GGVRA AIEILPGITKIVIKR DGGDV V G+ ++ S LWRFRLPP TQPE VTAV GGKLVVTVPKIK Sbjct: 2 FAKKRSQHGGVVSSMPSSNAKKLLRLPHVFAKILELPFPSDDDVLVEETPQFFRFVASCN------AGGVRALAIEILPGITKIVIKRMDGGDVAVAGRHQQVPS-GFGLWRFRLPPGTQPEMVTAVSIGGKLVVTVPKIK 135
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|I1JF94|I1JF94_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100783636 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 4.415e-60 Identity = 103/141 (73.05%), Postives = 111/141 (78.72%), Query Frame = 0 Query: 12 FAKKRPQHV-VVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIK 151 FAKKR QH VVSS P+ N KKL RLPHVFA++LELPFPSD DV +EETPQFFRFVASCN +GGVRA AIEILPGITKIVIKR DGGDV V G+ ++ S LWRFRLPP TQPE VTAV GGKLVVTVPKIK Sbjct: 2 FAKKRSQHGGVVSSMPSSNAKKLLRLPHVFAKILELPFPSDDDVLVEETPQFFRFVASCN------AGGVRALAIEILPGITKIVIKRMDGGDVAVAGRHQQVPS-GFGLWRFRLPPGTQPEMVTAVSIGGKLVVTVPKIK 135
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A445IGY9|A0A445IGY9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_025830 PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.687e-59 Identity = 99/140 (70.71%), Postives = 113/140 (80.71%), Query Frame = 0 Query: 12 FAKKRPQHVVVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIK 151 FAKKR + VVSS P+ N KKL RLPHVFA++LELPFPS+ DVS+EETPQFFRFVASCN + GGVRA AI+I PGITKIVIKR DGGDV V G+Q+++ LWRFRLPP TQPE VTAVC+GGKL+VTVPKIK Sbjct: 47 FAKKRSRRGVVSSLPSSNAKKLLRLPHVFAKILELPFPSEDDVSVEETPQFFRFVASCN-----ADGGVRALAIDIFPGITKIVIKRMDGGDVAVPGQQQQQVPSGFGLWRFRLPPWTQPEMVTAVCSGGKLMVTVPKIK 181
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N0Q1|A0A4D6N0Q1_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1476 PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.583e-57 Identity = 104/151 (68.87%), Postives = 114/151 (75.50%), Query Frame = 0 Query: 1 MFAKKLTTVNPFAKKRPQHVVVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIK 151 MFAK T+ PFA+KR Q VVSS P TKKL RLPHVF+++LELP PSD DV +EETPQ FRFVASCN +GGVRA AIEILPGITKIVIKR DG DV V G Q + S V LWRFRLPP TQPE VTAVC+GGKL+VTVPK K Sbjct: 1 MFAK---TLKPFAEKRSQRGVVSSAP---TKKLLRLPHVFSKILELPCPSDDDVFVEETPQSFRFVASCN------AGGVRALAIEILPGITKIVIKRMDGTDVAVAG-QRQYGSLGVGLWRFRLPPWTQPEMVTAVCSGGKLMVTVPKNK 138
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V458|A0A1S3V458_VIGRR (uncharacterized protein LOC106771489 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771489 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.649e-56 Identity = 102/151 (67.55%), Postives = 112/151 (74.17%), Query Frame = 0 Query: 1 MFAKKLTTVNPFAKKRPQHVVVSSTPNVNTKKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIK 151 MFAK T+ PFA+KR Q VVSS+P TKKL RLPHVF+++LELP S DV +EETP FFRFVA CN +GGVRA AIEILPGITKIVIKR DG DV V G Q + S V LWRFRLPP TQPE VTAVC+GGKLVVTVPK K Sbjct: 1 MFAK---TLKPFAEKRSQRGVVSSSP---TKKLLRLPHVFSKILELPCSSSDDVFVEETPHFFRFVAPCN------AGGVRALAIEILPGITKIVIKRMDGSDVAVAG-QRQYSSLGVGLWRFRLPPGTQPEMVTAVCSGGKLVVTVPKNK 138
BLAST of jg2001.t1 vs. Araport11
Match: AT4G14830.1 (| 17.6 kDa class II heat shock protein | Chr4:8510983-8511441 FORWARD LENGTH=152 | 201606) HSP 1 Score: 108.997 bits (271), Expect = 7.176e-31 Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 0 Query: 31 KKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVASCNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTG-GKLVVTVPKIK 151 KKL RLPH+F+R+LELP SDADV++EE+ FRFVA +T+ GGVRA+ +EI PG+TKI++ R +G + E +D+WRFRLP T+PE VT C G G+L+VTVPKI+ Sbjct: 28 KKLRRLPHIFSRVLELPLKSDADVAVEESHDCFRFVA---ETDGGGGGGVRAYMVEIHPGVTKILV-RTNGSSSLGLSLDE----LELDVWRFRLPESTRPELVTVDCDGDGELIVTVPKIE 141
BLAST of jg2001.t1 vs. Araport11
Match: AT3G22530.1 (| heat shock protein | Chr3:7977774-7978370 REVERSE LENGTH=198 | 201606) HSP 1 Score: 105.531 bits (262), Expect = 6.741e-29 Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 0 Query: 31 KKLWRLPHVFARMLELPFPSDADVSIEETPQFFRFVAS----CNKTNIFSSGGVRAHAIEILPGITKIVIKRFDGGDVVVDGKQERRCSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPK 149 K L RLPH+F R+LELP S+ADV++EE FRFVA CN G +RA+ +EI PGITKIV+ R +G + E +D+WRFRLP T+PE VT C G L+VTVPK Sbjct: 59 KNLRRLPHIFNRVLELPLRSEADVAVEERHDCFRFVAETVGLCN-----GDGEMRAYMVEIHPGITKIVV-RTNGSSSLGLSLDE----LELDVWRFRLPESTRPELVTVACVDGDLIVTVPK 171 The following BLAST results are available for this feature:
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs UniProt TrEMBL) Total hits: 10
BLAST of jg2001.t1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs UniProt Swissprot) Total hits: 0
BLAST of jg2001.t1 vs. Araport11
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia sativa cv. Studenica genome v1.0
Date Performed: 2023-06-15
Sequences
The
following sequences are available for this feature:
mRNA sequence >jg2001.t1_Vsativa-uoa_v1 ID=jg2001.t1_Vsativa-uoa_v1; Name=jg2001.t1; organism=Vicia sativa; type=mRNA; length=459bpback to top protein sequence of jg2001.t1_Vsativa-uoa_v1 >jg2001.t1_Vsativa-uoa_v1 ID=jg2001.t1_Vsativa-uoa_v1; Name=jg2001.t1_Vsativa-uoa_v1; organism=Vicia sativa; type=polypeptide; length=152bpback to top mRNA from alignment at Chr6:88257116..88257574- Legend: exonCDSpolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>jg2001.t1_Vsativa-uoa_v1 ID=jg2001.t1_Vsativa-uoa_v1; Name=jg2001.t1; organism=Vicia sativa; type=mRNA; length=459bp; location=Sequence derived from: Chr6:88257116..88257574- (Vicia sativaback to top Coding sequence (CDS) from alignment at Chr6:88257116..88257574- >jg2001.t1_Vsativa-uoa_v1 ID=jg2001.t1_Vsativa-uoa_v1; Name=jg2001.t1; organism=Vicia sativa; type=CDS; length=459bp; location=Sequence derived from: Chr6:88257116..88257574- (Vicia sativaback to top |