jg44243.t1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|G7IP60|G7IP60_MEDTR (F-box plant-like protein OS=Medicago truncatula OX=3880 GN=11439322 PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.112e-48 Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
MCS+R DQ PNRIYPEP SYF QIDHFD IPD LLLLVFNKI DVKALGR V+S RFHSLVP VEN+VVRVDCVISDDD N S +S DKSRGPFWNLLRLVFGG+ KPIQT+ QFLG K
Sbjct: 1 MCSIRADQ--QPNRIYPEP-SYFPQIDHFDRIPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDSNSSVNSSDKSRGPFWNLLRLVFGGIAKPIQTLGQFLGPK 119
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XCV8|A0A1S2XCV8_CICAR (F-box protein At5g46170-like OS=Cicer arietinum OX=3827 GN=LOC101509647 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.043e-45 Identity = 93/124 (75.00%), Postives = 102/124 (82.26%), Query Frame = 0
Query: 1 MCSLRIDQP--SNPNRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
MCSLR DQ S NRIYPEPY F QIDHFD IPD LLLLVFNKI+DVKALGR V+S RFHSLVP VEN++VRVDCVISD+D + S +S DKSRGPFWNLLRLVFGG+ KPIQT+ QFLG K
Sbjct: 1 MCSLRSDQSLLSPTNRIYPEPY--FPQIDHFDRIPDSLLLLVFNKIADVKALGRCCVVSRRFHSLVPQVENVLVRVDCVISDEDSSSSTASSDKSRGPFWNLLRLVFGGIAKPIQTLGQFLGPK 122
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6ZYP1|A0A5B6ZYP1_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018032 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 3.457e-45 Identity = 83/124 (66.94%), Postives = 93/124 (75.00%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPY+Y IDHFD +PD LLLLVFNKI DVKALGR V+S RFHSLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLVFGG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6ZYP8|A0A5B6ZYP8_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018042 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 8.481e-45 Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPYSY IDHFD +PD LLLLVFNKI DVKALGR V+S RF SLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLVFGG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLATKIYPEPYSYTPISGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFQSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5J4Z8L2|A0A5J4Z8L2_9ASTE (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_018084 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 9.039e-45 Identity = 83/124 (66.94%), Postives = 93/124 (75.00%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPY+Y IDHFD +PD LLLLVFNKI DVKALGR V+S RFHSLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLVFGG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLATKIYPEPYTYTPASSIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDASSAAGSPDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6ZVQ6|A0A5B6ZVQ6_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018038 PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.119e-44 Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPYSY IDHFD +PD LLLLVFNKI DVKALGR V+S RFHSLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLV GG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLATKIYPEPYSYTPISGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVLGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6ZYR6|A0A5B6ZYR6_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018037 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.779e-44 Identity = 81/124 (65.32%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPY+Y IDHFD +PD LLLLVFNKI DVKALGR V+S RF SLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLV GG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFQSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVLGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B7A0K6|A0A5B7A0K6_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018033 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 2.958e-44 Identity = 82/124 (66.13%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPY+Y IDHFD +PD LLLLVFNKI DVKALGR V+S RF SLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLVFGG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFQSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6ZXA4|A0A5B6ZXA4_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018036 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.468e-44 Identity = 82/124 (66.13%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPY+Y IDHFD +PD LLLLVFNKI DVKALGR V+S RFHSLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLV GG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVLGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6ZW50|A0A5B6ZW50_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_018040 PE=4 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.549e-43 Identity = 81/124 (65.32%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 1 MCSLRIDQPSNPNRIYPEPYSY--FLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
M SLR P +IYPEPY+Y IDHFD +PD LLLLVFNKI DVKALGR V+S RF SLVP VEN+VVRVDCVISDDD + +A S DKSRG F NL RLV GG+ KP+Q + QFLG K
Sbjct: 1 MSSLR---PDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFQSLVPQVENVVVRVDCVISDDDASSAAGSSDKSRGAFSNLFRLVLGGIVKPLQALGQFLGPK 121
BLAST of jg44243.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FNK5|FB285_ARATH (F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.257e-30 Identity = 67/114 (58.77%), Postives = 80/114 (70.18%), Query Frame = 0
Query: 12 PNRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVI---SDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
P+RI+PEP L+IDHFDH+PD +LLLVFNKI DVKALGR V+S RFHSLVP V+N+VVRVDCVI L+ S S G F + RLV GG+ KP+Q + QFLG K
Sbjct: 11 PSRIHPEP-PQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTK 123
BLAST of jg44243.t1 vs. UniProtKB/Swiss-Prot
Match: sp|O49508|FB237_ARATH (F-box protein At4g18380 OS=Arabidopsis thaliana OX=3702 GN=At4g18380 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.312e-22 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0
Query: 13 NRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDK---SRGPFWNLLRLVFGGVTKPIQTIDQFL 119
+RI+PEP +IDHFD++PD +LLL+FN I DVKALGR V+S RFHSL+P VEN+ VRVDCVISDDD + S + + PF + RLVF KP+Q + QFL
Sbjct: 13 SRIHPEPQ----EIDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL 114
BLAST of jg44243.t1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C534|FB19_ARATH (F-box protein At1g30200 OS=Arabidopsis thaliana OX=3702 GN=At1g30200 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.058e-19 Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 0
Query: 13 NRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDD-----------DLNYSA-SSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
+RI+PEP S DHFD +PD LLLL+F+K++DVK LGR ++S RFHSLVP VEN++VRVDCVISDD LN ++ S + G F L RLVF + KP Q + Q LG K
Sbjct: 11 SRIHPEPQS-LTSFDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPK 131
BLAST of jg44243.t1 vs. Araport11
Match: AT5G46170.1 (| F-box family protein | Chr5:18715638-18716825 REVERSE LENGTH=395 | 201606) HSP 1 Score: 115.546 bits (288), Expect = 1.286e-31 Identity = 67/114 (58.77%), Postives = 80/114 (70.18%), Query Frame = 0
Query: 12 PNRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVI---SDDDLNYSASSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
P+RI+PEP L+IDHFDH+PD +LLLVFNKI DVKALGR V+S RFHSLVP V+N+VVRVDCVI L+ S S G F + RLV GG+ KP+Q + QFLG K
Sbjct: 11 PSRIHPEP-PQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTK 123
BLAST of jg44243.t1 vs. Araport11
Match: AT4G18380.2 (| F-box family protein | Chr4:10157957-10159099 FORWARD LENGTH=380 | 201606) HSP 1 Score: 93.5893 bits (231), Expect = 1.342e-23 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0
Query: 13 NRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDK---SRGPFWNLLRLVFGGVTKPIQTIDQFL 119
+RI+PEP +IDHFD++PD +LLL+FN I DVKALGR V+S RFHSL+P VEN+ VRVDCVISDDD + S + + PF + RLVF KP+Q + QFL
Sbjct: 13 SRIHPEPQ----EIDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL 114
BLAST of jg44243.t1 vs. Araport11
Match: AT4G18380.1 (| F-box family protein | Chr4:10157957-10159099 FORWARD LENGTH=380 | 201606) HSP 1 Score: 93.5893 bits (231), Expect = 1.342e-23 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0
Query: 13 NRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDDDLNYSASSYDK---SRGPFWNLLRLVFGGVTKPIQTIDQFL 119
+RI+PEP +IDHFD++PD +LLL+FN I DVKALGR V+S RFHSL+P VEN+ VRVDCVISDDD + S + + PF + RLVF KP+Q + QFL
Sbjct: 13 SRIHPEPQ----EIDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL 114
BLAST of jg44243.t1 vs. Araport11
Match: AT1G30200.2 (| F-box family protein | Chr1:10625147-10626286 FORWARD LENGTH=379 | 201606) HSP 1 Score: 84.7297 bits (208), Expect = 3.129e-20 Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 0
Query: 13 NRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDD-----------DLNYSA-SSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
+RI+PEP S DHFD +PD LLLL+F+K++DVK LGR ++S RFHSLVP VEN++VRVDCVISDD LN ++ S + G F L RLVF + KP Q + Q LG K
Sbjct: 11 SRIHPEPQS-LTSFDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPK 131
BLAST of jg44243.t1 vs. Araport11
Match: AT1G30200.1 (| F-box family protein | Chr1:10625147-10626286 FORWARD LENGTH=379 | 201606) HSP 1 Score: 84.7297 bits (208), Expect = 3.129e-20 Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 0
Query: 13 NRIYPEPYSYFLQIDHFDHIPDYLLLLVFNKISDVKALGRRHVMSSRFHSLVPHVENLVVRVDCVISDD-----------DLNYSA-SSYDKSRGPFWNLLRLVFGGVTKPIQTIDQFLGLK 122
+RI+PEP S DHFD +PD LLLL+F+K++DVK LGR ++S RFHSLVP VEN++VRVDCVISDD LN ++ S + G F L RLVF + KP Q + Q LG K
Sbjct: 11 SRIHPEPQS-LTSFDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPK 131 The following BLAST results are available for this feature:
BLAST of jg44243.t1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs UniProt TrEMBL) Total hits: 10
BLAST of jg44243.t1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs UniProt Swissprot) Total hits: 3
BLAST of jg44243.t1 vs. Araport11
Analysis Date: 2023-06-15 (Blastp of Vicia sativa cv. Studenica proteins vs arabidopsis Araport11) Total hits: 5
InterPro
Analysis Name: InterProScan Analysis for Vicia sativa cv. Studenica genome v1.0
Date Performed: 2023-06-15
Sequences
The
following sequences are available for this feature:
mRNA sequence >jg44243.t1_Vsativa-uoa_v1 ID=jg44243.t1_Vsativa-uoa_v1; Name=jg44243.t1; organism=Vicia sativa; type=mRNA; length=369bpback to top protein sequence of jg44243.t1_Vsativa-uoa_v1 >jg44243.t1_Vsativa-uoa_v1 ID=jg44243.t1_Vsativa-uoa_v1; Name=jg44243.t1_Vsativa-uoa_v1; organism=Vicia sativa; type=polypeptide; length=122bpback to top mRNA from alignment at Chr1:161555886..161556254+ Legend: exonCDSstart_codonpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>jg44243.t1_Vsativa-uoa_v1 ID=jg44243.t1_Vsativa-uoa_v1; Name=jg44243.t1; organism=Vicia sativa; type=mRNA; length=369bp; location=Sequence derived from: Chr1:161555886..161556254+ (Vicia sativaback to top Coding sequence (CDS) from alignment at Chr1:161555886..161556254+ >jg44243.t1_Vsativa-uoa_v1 ID=jg44243.t1_Vsativa-uoa_v1; Name=jg44243.t1; organism=Vicia sativa; type=CDS; length=369bp; location=Sequence derived from: Chr1:161555886..161556254+ (Vicia sativaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|