rna-XM_004486102.3

Transcript Overview


Name	rna-XM_004486102.3
Unique Name	rna-XM_004486102.3_CaCDCfrontier-NCBI_v1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	228
Product	MYB-like transcription factor ETC1

References

External references for this mRNA


Database	Accession
GeneID	101501623
GenBank	XM_004486102.3

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr1	chromosome	chr1:5452917..5454326 -	Cicer arietinum CDC Frontier NCBI RefSeq v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-04
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11	2024-01-25
InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL	2024-01-25

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ascanL012	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cacanL000	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascanL153	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ancanL0193	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0381	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0513	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cacanL282	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancanL0739	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cancanR045	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canccR0009	Cajanus cajan Asha genome v1.0	Cajanus cajan
canccR0069	Cajanus cajan Asha genome v1.0	Cajanus cajan
cancrR002	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cantifR014	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canpvR019	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvrvR013	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canvfhR013	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canpvR073	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvssR000	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvrvR079	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canvssR071	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvuaR023	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canzwsR015	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvuR029	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canzwsR039	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvuaR061	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR058	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canpsR023	Pisum sativum Cameor genome v1a	Pisum sativum
canpsR049	Pisum sativum Cameor genome v1a	Pisum sativum
avjcanL101	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanL196	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
cancarR000		Cicer arietinum
cancarR064		Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
rna-TanjilR_09343	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Psat01G0489900-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Psat1g181000.1	Pisum sativum Cameor genome v1a	Pisum sativum
jg38992.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC101501623	gene-LOC101501623_CaCDCfrontier-NCBI_v1	Cicer arietinum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_004486102.3_CaCDCfrontier-NCBI_v1	rna-XM_004486102.3_CaCDCfrontier-NCBI_v1	Cicer arietinum	polypeptide
rna-XM_004486102.3_CaCDCfrontier-NCBI_v1	rna-XM_004486102.3_CaCDCfrontier-NCBI_v1-protein	Cicer arietinum	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_004486102.3-3	exon-XM_004486102.3-3_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon
exon-XM_004486102.3-2	exon-XM_004486102.3-2_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon
exon-XM_004486102.3-1	exon-XM_004486102.3-1_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_004486159.1	cds-XP_004486159.1_CaCDCfrontier-NCBI_v1_3	Cicer arietinum	CDS
cds-XP_004486159.1	cds-XP_004486159.1_CaCDCfrontier-NCBI_v1_2	Cicer arietinum	CDS
cds-XP_004486159.1	cds-XP_004486159.1_CaCDCfrontier-NCBI_v1	Cicer arietinum	CDS

Homology

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: ETC3, CPL3 | CAPRICE-like MYB3, ENHANCER OF TRY AND CPC 3 | chr4:460534-460967 FORWARD LENGTH=77)

HSP 1 Score: 70.8626 bits (172), Expect = 5.830e-18
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0

Query:    7 VTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
            VT+++    VS ++ E V+  S EEED+V++M +LVG RW LIAGRIPGRTA EIE+FW  K
Sbjct:   16 VTSSSEGTEVSSLEWE-VVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEIERFWVMK 76

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: ETC1 | ENHANCER OF TRY AND CPC 1 | chr1:147267-147740 FORWARD LENGTH=83)

HSP 1 Score: 69.707 bits (169), Expect = 1.862e-17
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0

Query:   25 LEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKG 69
            +  + EEED++ +M++LVG+RW LIAGRIPGRTAEEIE+FW  K 
Sbjct:   32 IAMAQEEEDLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 76

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: ETC3, CPL3 | CAPRICE-like MYB3, ENHANCER OF TRY AND CPC 3 | chr4:460534-460967 FORWARD LENGTH=74)

HSP 1 Score: 68.1662 bits (165), Expect = 6.337e-17
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0

Query:   24 VLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
            V+  S EEED+V++M +LVG RW LIAGRIPGRTA EIE+FW  K
Sbjct:   29 VVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEIERFWVMK 73

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: ETC3, CPL3 | CAPRICE-like MYB3, ENHANCER OF TRY AND CPC 3 | chr4:460534-460967 FORWARD LENGTH=75)

HSP 1 Score: 68.1662 bits (165), Expect = 6.644e-17
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0

Query:   24 VLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
            V+  S EEED+V++M +LVG RW LIAGRIPGRTA EIE+FW  K
Sbjct:   30 VVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEIERFWVMK 74

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: CPC | CAPRICE | chr2:19049315-19050185 REVERSE LENGTH=94)

HSP 1 Score: 68.1662 bits (165), Expect = 1.242e-16
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 0

Query:   10 TNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
             + ++ VS ++ EAV + S EEED++++M++LVG RW LIAGRIPGRT EEIE++W  K
Sbjct:   22 ASCSEEVSSIEWEAV-KMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYWLMK 79

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: TRY, MAU5 | MALAMBRUNO5, TRIPTYCHON | chr5:21582913-21583960 FORWARD LENGTH=106)

HSP 1 Score: 64.3142 bits (155), Expect = 4.592e-15
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 0

Query:    5 KHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            +H    ++++ VS ++ E  +  + +EED++ +M+RLVG RW LIAGR+PGR  EEIE++W  + S
Sbjct:   12 QHKIALHDSEEVSSIEWE-FINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRNS 76

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: MAU2, TCL1 | TRICHOMELESS1, MALAMBRUNO2 | chr2:12968763-12970060 REVERSE LENGTH=84)

HSP 1 Score: 61.2326 bits (147), Expect = 5.206e-14
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0

Query:   10 TNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            T+++Q VS MK E +   + +EED++ +M+RLVG RW LIA R+ GR A+EIE++W  +  
Sbjct:   19 THSSQEVSSMKWEFI-NMTEQEEDLIFRMYRLVGDRWDLIARRVVGREAKEIERYWIMRNC 78

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: ETC2 | ENHANCER OF TRY AND CPC 2 | chr2:12960937-12961915 REVERSE LENGTH=112)

HSP 1 Score: 60.8474 bits (146), Expect = 1.208e-13
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            +  +K   +  +++ VS ++ E +   + +EED++++M+RLVG RW LIAGR+ GR A EIE++W  + S
Sbjct:   15 LRQTKFTRSRYDSEEVSSIEWEFI-SMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIERYWIMRNS 83

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: AtMYB82, MYB82 | myb domain protein 82 | chr5:21343197-21343968 REVERSE LENGTH=201)

HSP 1 Score: 57.3806 bits (137), Expect = 1.421e-11
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 0

Query:   27 FSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTS 67
             SP+E+D++ +M +L+G RW LIAGR+PGRT  E++ +W +
Sbjct:   70 MSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNT 110

[Close]

BLAST of rna-XM_004486102.3 vs. Araport11
Match: | (Symbols: TCL2 | TRICHOMELESS 2 | chr2:12964506-12965468 REVERSE LENGTH=100)

HSP 1 Score: 55.0694 bits (131), Expect = 1.646e-11
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0

Query:   25 LEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            +  + +EED++ +M RLVG RW LIAGR+ GR A++IE++W  +  
Sbjct:   34 INMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDIERYWIMRNC 79

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LNI5|ETC1_ARATH (MYB-like transcription factor ETC1 OS=Arabidopsis thaliana OX=3702 GN=ETC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.790e-16
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0

Query:   25 LEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKG 69
            +  + EEED++ +M++LVG+RW LIAGRIPGRTAEEIE+FW  K 
Sbjct:   32 IAMAQEEEDLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 76

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M157|ETC3_ARATH (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.387e-16
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0

Query:   24 VLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
            V+  S EEED+V++M +LVG RW LIAGRIPGRTA EIE+FW  K
Sbjct:   30 VVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEIERFWVMK 74

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|O22059|CPC_ARATH (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.195e-15
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 0

Query:   10 TNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
             + ++ VS ++ EAV + S EEED++++M++LVG RW LIAGRIPGRT EEIE++W  K
Sbjct:   22 ASCSEEVSSIEWEAV-KMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYWLMK 79

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8GV05|TRY_ARATH (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.420e-14
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 0

Query:    5 KHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            +H    ++++ VS ++ E  +  + +EED++ +M+RLVG RW LIAGR+PGR  EEIE++W  + S
Sbjct:   12 QHKIALHDSEEVSSIEWE-FINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRNS 76

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|D3GKW6|TCL1_ARATH (MYB-like transcription factor TCL1 OS=Arabidopsis thaliana OX=3702 GN=TCL1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.010e-13
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0

Query:   10 TNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            T+++Q VS MK E +   + +EED++ +M+RLVG RW LIA R+ GR A+EIE++W  +  
Sbjct:   19 THSSQEVSSMKWEFI-NMTEQEEDLIFRMYRLVGDRWDLIARRVVGREAKEIERYWIMRNC 78

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q84RD1|ETC2_ARATH (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.164e-12
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            +  +K   +  +++ VS ++ E +   + +EED++++M+RLVG RW LIAGR+ GR A EIE++W  + S
Sbjct:   15 LRQTKFTRSRYDSEEVSSIEWEFI-SMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIERYWIMRNS 83

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LTF7|MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.385e-10
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 0

Query:   27 FSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTS 67
             SP+E+D++ +M +L+G RW LIAGR+PGRT  E++ +W +
Sbjct:   70 MSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNT 110

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|B3H4X8|TCL2_ARATH (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.588e-10
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0

Query:   25 LEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGS 70
            +  + +EED++ +M RLVG RW LIAGR+ GR A++IE++W  +  
Sbjct:   34 INMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDIERYWIMRNC 79

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LXV2|MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana OX=3702 GN=MYB46 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.583e-10
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query:   18 DMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTS 67
            D+KR A   FSP+EED++ +   ++G RW  IA R+PGRT  EI+ FW S
Sbjct:   70 DLKRGA---FSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNS 116

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q38850|MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana OX=3702 GN=MYB5 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 8.926e-10
Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query:   28 SPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTS 67
            + +EED++ ++ RL+G RW LIAGRIPGRT  EI+ +W +
Sbjct:   82 TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNT 121

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XAA1|A0A1S2XAA1_CICAR (MYB-like transcription factor ETC1 OS=Cicer arietinum OX=3827 GN=LOC101501623 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.949e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSSKVN 75
            MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSSKVN
Sbjct:    1 MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSSKVN 75

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A896WCI8|A0A896WCI8_MELAB (MYB family transcription factor OS=Melilotus albus OX=47082 GN=EVM0031501.1 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.762e-36
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVS--DMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSS 72
            MSDSKH TT NN  YVS   MKRE VLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRT E+IEK+WTSK SSS
Sbjct:    1 MSDSKHATTENNGHYVSSDQMKREVVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTPEDIEKYWTSKFSSS 74

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072V6B3|A0A072V6B3_MEDTR (Myb transcription factor OS=Medicago truncatula OX=3880 GN=25486148 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.620e-35
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVS--DMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSS 72
            MSDSK+ TT NN QYVS   M RE VLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRT E+IEK+WTSK SSS
Sbjct:    1 MSDSKYATTANNGQYVSSDQMNREDVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTPEDIEKYWTSKFSSS 74

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D5BNV3|A0A9D5BNV3_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_014899 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.266e-33
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYV--SDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSS 72
            MSDSK+ TT NN QY     MKRE  LEFSPEEEDIV KMFRLVGKRWHLIAGRIPGRTAE+IEK+W SK SSS
Sbjct:    1 MSDSKYATTANNGQYAYADQMKRETELEFSPEEEDIVVKMFRLVGKRWHLIAGRIPGRTAEDIEKYWNSKFSSS 74

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LB38|A0A2K3LB38_TRIPR (Transcription factor cpc-like protein OS=Trifolium pratense OX=57577 GN=L195_g031677 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.407e-31
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVS--DMKREAV-LEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSS 72
            MSDSK+  T NN QY S   MKRE   LE SPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAE+IEK+WTSK SSS
Sbjct:    1 MSDSKNEATANNGQYGSSEQMKRETTELELSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEDIEKYWTSKFSSS 75

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4CYL7|A0A6P4CYL7_ARADU (MYB-like transcription factor ETC3 OS=Arachis duranensis OX=130453 GN=LOC107482590 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.976e-24
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0

Query:    1 MSDSKHVTTT--NNA---QYVSDMKRE---AVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
            MSDS H +TT  N A   Q+V +M++E    +LEFS +EED+VA+MFRLVGKRW LIAGRIPGRTA+EIEK+W+SK
Sbjct:    1 MSDSNHHSTTEANTASSDQFVKEMRQEEEPTMLEFSEDEEDLVARMFRLVGKRWSLIAGRIPGRTAQEIEKYWSSK 76

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A444ZCN5|A0A444ZCN5_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g069442 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.976e-24
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0

Query:    1 MSDSKHVTTT--NNA---QYVSDMKRE---AVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK 68
            MSDS H +TT  N A   Q+V +M++E    +LEFS +EED+VA+MFRLVGKRW LIAGRIPGRTA+EIEK+W+SK
Sbjct:    1 MSDSNHHSTTEANTASSDQFVKEMRQEEEPTMLEFSEDEEDLVARMFRLVGKRWSLIAGRIPGRTAQEIEKYWSSK 76

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2N9H5L1|A0A2N9H5L1_FAGSY (Myb-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34945 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.520e-21
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSSKVN 75
            M D    T  NN +   +  +++ LEFS +E  ++AKMFRLVG+RW LIAGRIPGRTAEEIEK+WTS+ +SS  N
Sbjct:    1 MGDLAQTTIDNNEETKEEKSQDSKLEFSEDEVSLIAKMFRLVGERWSLIAGRIPGRTAEEIEKYWTSRHTSSTSN 75

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8J4VMJ3|A0A8J4VMJ3_9ROSI (Uncharacterized protein OS=Castanea mollissima OX=60419 GN=CMV_020584 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.536e-21
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 0

Query:    1 MSDSKHVTTTNNAQYVSDMKRE--AVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSS 72
            M D    T  NN +   + K+E  + LEFS +E  ++AKMFRLVG+RW LIAGRIPGRTAEEIEK+WT+K SSS
Sbjct:    1 MGDLTQTTNDNNEETKEENKQEQDSKLEFSEDEVSLIAKMFRLVGERWSLIAGRIPGRTAEEIEKYWTTKHSSS 74

[Close]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1RMY7|A0A4P1RMY7_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09343 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.487e-21
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0

Query:    1 MSDSKHVTTTN---NAQYVSDMKRE-AVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSK-GSSS 72
            MS+  H T  N   N Q    ++RE   +EFS +EEDI+AKMFRLVG+RW LIAGRIPGRTAEEIEK+WT+K GS+S
Sbjct:    1 MSNKNHATDANIGNNGQ--QGVRRENPKVEFSEDEEDIIAKMFRLVGERWSLIAGRIPGRTAEEIEKYWTTKFGSTS 75

The following BLAST results are available for this feature:

BLAST of rna-XM_004486102.3 vs. Araport11
BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL

BLAST of rna-XM_004486102.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
\|	5.830e-18	56.45	Symbols: ETC3, CPL3 \| CAPRICE-like MYB3, ENHANCER ...	[more]
\|	1.862e-17	62.22	Symbols: ETC1 \| ENHANCER OF TRY AND CPC 1 \| chr1:1...	[more]
\|	6.337e-17	66.67	Symbols: ETC3, CPL3 \| CAPRICE-like MYB3, ENHANCER ...	[more]
\|	6.644e-17	66.67	Symbols: ETC3, CPL3 \| CAPRICE-like MYB3, ENHANCER ...	[more]
\|	1.242e-16	54.24	Symbols: CPC \| CAPRICE \| chr2:19049315-19050185 RE...	[more]
\|	4.592e-15	42.42	Symbols: TRY, MAU5 \| MALAMBRUNO5, TRIPTYCHON \| chr...	[more]
\|	5.206e-14	45.90	Symbols: MAU2, TCL1 \| TRICHOMELESS1, MALAMBRUNO2 \|...	[more]
\|	1.208e-13	38.57	Symbols: ETC2 \| ENHANCER OF TRY AND CPC 2 \| chr2:1...	[more]
\|	1.421e-11	48.78	Symbols: AtMYB82, MYB82 \| myb domain protein 82 \| ...	[more]
\|	1.646e-11	45.65	Symbols: TCL2 \| TRICHOMELESS 2 \| chr2:12964506-129...	[more]

BLAST of rna-XM_004486102.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
sp\|Q9LNI5\|ETC1_ARATH	1.790e-16	62.22	MYB-like transcription factor ETC1 OS=Arabidopsis ...	[more]
sp\|Q9M157\|ETC3_ARATH	6.387e-16	66.67	MYB-like transcription factor ETC3 OS=Arabidopsis ...	[more]
sp\|O22059\|CPC_ARATH	1.195e-15	54.24	Transcription factor CPC OS=Arabidopsis thaliana O...	[more]
sp\|Q8GV05\|TRY_ARATH	4.420e-14	42.42	Transcription factor TRY OS=Arabidopsis thaliana O...	[more]
sp\|D3GKW6\|TCL1_ARATH	5.010e-13	45.90	MYB-like transcription factor TCL1 OS=Arabidopsis ...	[more]
sp\|Q84RD1\|ETC2_ARATH	1.164e-12	38.57	MYB-like transcription factor ETC2 OS=Arabidopsis ...	[more]
sp\|Q9LTF7\|MYB82_ARATH	1.385e-10	48.78	Transcription factor MYB82 OS=Arabidopsis thaliana...	[more]
sp\|B3H4X8\|TCL2_ARATH	1.588e-10	45.65	MYB-like transcription factor TCL2 OS=Arabidopsis ...	[more]
sp\|Q9LXV2\|MYB46_ARATH	2.583e-10	50.00	Transcription factor MYB46 OS=Arabidopsis thaliana...	[more]
sp\|Q38850\|MYB5_ARATH	8.926e-10	52.50	Transcription repressor MYB5 OS=Arabidopsis thalia...	[more]

BLAST of rna-XM_004486102.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S2XAA1\|A0A1S2XAA1_CICAR	2.949e-48	100.00	MYB-like transcription factor ETC1 OS=Cicer arieti...	[more]
tr\|A0A896WCI8\|A0A896WCI8_MELAB	3.762e-36	83.78	MYB family transcription factor OS=Melilotus albus...	[more]
tr\|A0A072V6B3\|A0A072V6B3_MEDTR	1.620e-35	82.43	Myb transcription factor OS=Medicago truncatula OX...	[more]
tr\|A0A9D5BNV3\|A0A9D5BNV3_PEA	1.266e-33	78.38	Uncharacterized protein OS=Pisum sativum OX=3888 G...	[more]
tr\|A0A2K3LB38\|A0A2K3LB38_TRIPR	1.407e-31	78.67	Transcription factor cpc-like protein OS=Trifolium...	[more]
tr\|A0A6P4CYL7\|A0A6P4CYL7_ARADU	3.976e-24	64.47	MYB-like transcription factor ETC3 OS=Arachis dura...	[more]
tr\|A0A444ZCN5\|A0A444ZCN5_ARAHY	3.976e-24	64.47	Uncharacterized protein OS=Arachis hypogaea OX=381...	[more]
tr\|A0A2N9H5L1\|A0A2N9H5L1_FAGSY	1.520e-21	56.00	Myb-like domain-containing protein OS=Fagus sylvat...	[more]
tr\|A0A8J4VMJ3\|A0A8J4VMJ3_9ROSI	6.536e-21	59.46	Uncharacterized protein OS=Castanea mollissima OX=...	[more]
tr\|A0A4P1RMY7\|A0A4P1RMY7_LUPAN	8.487e-21	62.34	Uncharacterized protein OS=Lupinus angustifolius O...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 26..66 e-value: 3.2E-7 score: 41.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 27..65 score: 6.283716
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 26..65 e-value: 3.47245E-8 score: 42.9478
None	No IPR available	GENE3D	1.10.10.60		coord: 26..68 e-value: 7.6E-11 score: 43.8
None	No IPR available	PANTHER	PTHR47998	TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1	coord: 25..69
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 27..73 score: 10.063124
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 27..67

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:5452917..5454326-
coding sequence from alignment at chr1:5452917..5454326-

mRNA sequence

>rna-XM_004486102.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486102.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486102.3; organism=Cicer arietinum; type=mRNA; length=228bp
ATGAGTGACTCAAAGCATGTAACCACTACAAACAATGCCCAATATGTTTC
AGATATGAAACGTGAGGCTGTGCTGGAATTCTCCCCGGAAGAGGAAGATA
TTGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCT
GGGAGAATCCCTGGAAGAACCGCAGAAGAGATTGAAAAGTTTTGGACTTC
AAAGGGCTCTTCATCCAAAGTTAATTAA

protein sequence of rna-XM_004486102.3_CaCDCfrontier-NCBI_v1

>rna-XM_004486102.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486102.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486102.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=75bp
MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIA
GRIPGRTAEEIEKFWTSKGSSSKVN

mRNA from alignment at chr1:5452917..5454326-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_004486102.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486102.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486102.3; organism=Cicer arietinum; type=mRNA; length=1410bp; location=Sequence derived from: chr1:5452917..5454326- (Cicer arietinum
ATACTCTAGCTTTGTCCCATTTTATTTGTCTATTTGTAAACAAGCTAGCT
AGCATACTTCACTTTATATAAACATACAAACCTATGCTAGTTTGCTTATC
CCTACAAACTGAGTTTAACTATACTTACCCATTCCCTGCCCAAAAATATG
AGTGACTCAAAGCATGTAACCACTACAAACAATGCCCAATATGTTTCAGG
TACCACTTCAACTTCACCACCTTCATATTCATACATATATTTATACATGT
TTTTAACTAATCTATTCACCTCTTCCTAAATGATGAATTTGTATCTCTCT
GTTTGTTTTAGATATGAAACGTGAGGCTGTGCTGGAATTCTCCCCGGAAG
AGGAAGATATTGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGGTTAATT
ATGTCATATACTACTGTATATTTAATTTTTGTTTTAATATATATATATAT
ATATATATATATATATATTGTTAGTAATAGTTAAAAAAAATTGATTTTCG
AATAAGTTAGTTTGAACTGAATACAAGTTTTGTTGATAAGAAAAACAAAA
TATATATGTATATATATATATATATTTATATATATATATATATATATATA
TATATATATATATATATATATAGTGTGTGTGTGTGTGTATGAGATTAAAT
TAATTGATAGAATTCTTTTTATACCTTTATTTAATGTAAGGTTTATTTTT
GTCAGAAACTCATACATAATATACATAAGACATTTAATGTTAGGGTATAT
TTGGAATAACATCTAAATTATATAGCATAAAATAAGTTTATTGGTTCTTA
CGATTTTATAATTTCTTCTTATATTAAGGATTTGAGAAAGTATTAAATTT
TTTGATCGAATTTATCTAAATAATAGTTTTTAAACAATCTATGATTATAT
ATGTAAATTTTTGTATAAAATTTTAAGAATATTTAATATATTAATAAATT
AGTATGTAAGTTTCAACTCAAAGTATAATATAGTTTTTAAAATATAATTA
TAAGATAGTATGAGGTACCTATATCCAATTTGTATTAATTTTGGTATGGA
AGATTTAAAAGTACAGTGAAGGTCTAAAGTGTGTTTGACCTATTGTAGAT
GGCATCTCATTGCTGGGAGAATCCCTGGAAGAACCGCAGAAGAGATTGAA
AAGTTTTGGACTTCAAAGGGCTCTTCATCCAAAGTTAATTAAATGGAGAT
CTTCTTTTACCTAAAATGAAACTTCTTATTTTCTGTCGAAATAAATAAAT
AAAAGTAATTTCTTATGTAATTTTATTTAAGCAACTTCTTATTTAATTAT
TATTGTAATTGTTATTAAGATGCTTGCATTTTTAGGATAAATATTATATG
ATGAAAATCTACTAAATGGATTGCTATATGAGCTCTTTTATGGAAATAAA
ATTATGTATA

Coding sequence (CDS) from alignment at chr1:5452917..5454326-

>rna-XM_004486102.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486102.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486102.3; organism=Cicer arietinum; type=CDS; length=228bp; location=Sequence derived from: chr1:5452917..5454326- (Cicer arietinum
ATGAGTGACTCAAAGCATGTAACCACTACAAACAATGCCCAATATGTTTC
AGATATGAAACGTGAGGCTGTGCTGGAATTCTCCCCGGAAGAGGAAGATA
TTGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCT
GGGAGAATCCCTGGAAGAACCGCAGAAGAGATTGAAAAGTTTTGGACTTC
AAAGGGCTCTTCATCCAAAGTTAATTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR017930	Myb_dom
IPR009057	Homeodomain-like_sf

Search form

rna-XM_004486102.3