rna-XM_004486107.3

Transcript Overview


Name	rna-XM_004486107.3
Unique Name	rna-XM_004486107.3_CaCDCfrontier-NCBI_v1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	492
Product	uncharacterized LOC101503430

References

External references for this mRNA


Database	Accession
GeneID	101503430
GenBank	XM_004486107.3

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr1	chromosome	chr1:5531608..5532707 +	Cicer arietinum CDC Frontier NCBI RefSeq v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-04
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11	2024-01-25
InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL	2024-01-25

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ascanL012	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cacanL000	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascanL153	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ancanL0193	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0381	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0513	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cacanL282	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancanL0739	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cancanR045	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
caicanL0011	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
canccR0009	Cajanus cajan Asha genome v1.0	Cajanus cajan
canccR0069	Cajanus cajan Asha genome v1.0	Cajanus cajan
canccR0107	Cajanus cajan Asha genome v1.0	Cajanus cajan
cancrR002	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
caicanL0826	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caicanL0828	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cantifR014	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canpvR019	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvrvR013	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canvfhR013	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
cantifR037	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canvfhR036	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canpvR073	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvssR000	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvrvR079	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canvssR071	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvuaR023	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canzwsR015	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvuR029	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canzwsR039	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvuaR061	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR058	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canpsR023	Pisum sativum Cameor genome v1a	Pisum sativum
canpsR049	Pisum sativum Cameor genome v1a	Pisum sativum
avjcanL101	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanL196	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
cancarR000		Cicer arietinum
cancarR064		Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
LR48_mrnaVigan01g336000	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
evm.model.Chr03.1051	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.1g452680.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-KK1_004534	Cajanus cajan Asha genome v1.0	Cajanus cajan
LR48_mrnaVigan09g207800	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
rna-KK1_025946	Cajanus cajan Asha genome v1.0	Cajanus cajan
rna-TanjilR_06807	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Tiffany.R1.2g034880.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Phvul.003G079000.2	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Va09G055560.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vfaba.Hedin2.R1.2g042840.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Phvul.006G149660.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-KK1_017327	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigun03g446400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_022787213.1	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Va01G101070.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
jg39011.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Psat01G0489200-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vigun06g161900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
evm.model.Chr06.1681	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-XM_014652554.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Ca_00638	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC101503430	gene-LOC101503430_CaCDCfrontier-NCBI_v1	Cicer arietinum	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_004486107.3-1	exon-XM_004486107.3-1_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_004486164.1	cds-XP_004486164.1_CaCDCfrontier-NCBI_v1	Cicer arietinum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_004486107.3_CaCDCfrontier-NCBI_v1	rna-XM_004486107.3_CaCDCfrontier-NCBI_v1	Cicer arietinum	polypeptide
rna-XM_004486107.3_CaCDCfrontier-NCBI_v1	rna-XM_004486107.3_CaCDCfrontier-NCBI_v1-protein	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2332163-2332669 REVERSE LENGTH=168)

HSP 1 Score: 131.724 bits (330), Expect = 2.549e-39
Identity = 82/150 (54.67%), Postives = 98/150 (65.33%), Query Frame = 0

Query:   20 DNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWH------DDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            D +F EEDVWSV  E E    ++K      S SSS+   P   +R   VS      VK SSAPMN+PDWSKVYG +      +    H      +D+DG MVPPHEW+ARKLAR QISSFS+ EG+GRTLKGRDLSKVRNA+L+KTGF+E
Sbjct:   24 DEEFQEEDVWSVLREGETSSPEMKIPKSHFSSSSSSSSSPWNIRRSKEVSG-----VKQSSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11653633-11654106 FORWARD LENGTH=157)

HSP 1 Score: 122.094 bits (305), Expect = 9.623e-36
Identity = 71/138 (51.45%), Postives = 90/138 (65.22%), Query Frame = 0

Query:   28 VWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWH--DDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            VWSV  E E  G ++K    ++  S+S+        + N VS       K SSAPMNIPDWSKVYG +      +   W   DD++G MVPPHE +A++LAR QISSFS+ EG+GRTLKGRDLSK RNA+LT+TGF+E
Sbjct:   12 VWSVLRESETQGPEMKMSKSNNLFSASSSSSARYIPKGNEVSG----GAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGSMVPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:16557482-16557928 REVERSE LENGTH=148)

HSP 1 Score: 83.9593 bits (206), Expect = 6.129e-21
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 0

Query:   82 PMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGD--MVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            PMN+ +WSK+ GK       N     +D+DG    +PPHE+    LA+ +++SFSV EG+GRTLKGRD+S+VRNAIL KTGF++
Sbjct:   75 PMNVQNWSKILGKE------NRKSIENDDDGGEGKLPPHEY----LAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:5065445-5066176 REVERSE LENGTH=243)

HSP 1 Score: 80.4925 bits (197), Expect = 9.905e-19
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 0

Query:   58 LPTAPKRVNSVSDIDDPFVKG----SSAPMNIPDWSKVYGKNVGGDY---GNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            +PTAPK           FV G     SAP+ +P  S         ++      DD  ++E+G+M+PPHE +AR LA++ + S SV EG GRTLKGRDL +VRNA+  +TGFI+
Sbjct:  131 IPTAPKPPQERLPFSASFVGGGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDVVDDDEEEEEGEMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3945852-3946457 FORWARD LENGTH=201)

HSP 1 Score: 77.7962 bits (190), Expect = 3.907e-18
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0

Query:   79 SSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISS---FSVFEGMGRTLKGRDLSKVRNAILTKTGF 161
            SSAP+N+PDWSK+Y  N        D+  +++ G M+PPHE++A+   R    S    SVFEG+GRTLKGR+L +VR+AI ++TGF
Sbjct:  114 SSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGF 199

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:10355959-10356381 REVERSE LENGTH=140)

HSP 1 Score: 74.7146 bits (182), Expect = 1.818e-17
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 0

Query:   37 DFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDG-DMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            DF    +RV   SS  S   PLP+A   V + S         SS P+NIP             Y   +++ DD+ G  M+PPH  + R++   Q++ FSV  G GRTLKGRDLS+VRN++L  TGF+E
Sbjct:   35 DFRENSERVWNKSSRRSKTTPLPSA---VTAFS---------SSLPVNIPMRR----------YSTEEEYSDDDGGRKMIPPHLIVGRRMEGGQMA-FSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:12148513-12149001 REVERSE LENGTH=162)

HSP 1 Score: 71.633 bits (174), Expect = 3.741e-16
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0

Query:   78 GSSAPMNIPDWSKVYG-------KNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGF 161
             SS P+N+PDWSK+ G       K    +  +GD+    E    VPPHE +A +    +++SFSV EG GRTLKGRDLS+VRN I    G 
Sbjct:   74 ASSLPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCGEGTRRVPPHELLANR----RMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGI 160

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:13533643-13534077 REVERSE LENGTH=144)

HSP 1 Score: 70.4774 bits (171), Expect = 7.863e-16
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 0

Query:   20 DNDFNEEDVWSVAN-EREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPF-VKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            D DF E+DVW V +  +  F       +K S  + +   LP+ P+ +      +    ++  S P+N+PDWS V  K             DDE+   V P E+  R+   +  SS SV EG+GR LKGRDLSKVRNAIL +TGF+E
Sbjct:   13 DGDFQEDDVWDVLDGYQSPFMISSNHTTKPSFSTQTL--LPSEPRMIPERQRTEGMAPMRQQSVPVNVPDWSMVQRKKTKKVV-------DDEN---VSPEEYFLRRSRSS--SSSSVMEGVGRKLKGRDLSKVRNAILKQTGFLE 144

[Close]

Query:   20 DNDFNEEDVWSVAN-EREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPF-VKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            D DF E+DVW V +  +  F       +K S  + +   LP+ P+ +      +    ++  S P+N+PDWS V  K             DDE+   V P E+  R+   +  SS SV EG+GR LKGRDLSKVRNAIL +TGF+E
Sbjct:   13 DGDFQEDDVWDVLDGYQSPFMISSNHTTKPSFSTQTL--LPSEPRMIPERQRTEGMAPMRQQSVPVNVPDWSMVQRKKTKKVV-------DDEN---VSPEEYFLRRSRSS--SSSSVMEGVGRKLKGRDLSKVRNAILKQTGFLE 144

[Close]

BLAST of rna-XM_004486107.3 vs. Araport11
Match: | (Symbols: S40-6 | | chr1:22893218-22893829 FORWARD LENGTH=203)

HSP 1 Score: 71.633 bits (174), Expect = 1.136e-15
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 0

Query:   79 SSAPMNIPDWSKVYG-KNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQI----SSFSVFEGMGRTLKGRDLSKVRNAILTKTGF 161
            SSAP+N+PDWSK+Y   +V   +   D+  +DE+  M+PPHE++A+  AR          SVF+G+GRTLKGR+L +VR+AI ++TGF
Sbjct:  114 SSAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGF 201

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LKA1|S407_ARATH (Protein S40-7 OS=Arabidopsis thaliana OX=3702 GN=S40-7 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.613e-18
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 0

Query:   58 LPTAPKRVNSVSDIDDPFVKG----SSAPMNIPDWSKVYGKNVGGDY---GNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            +PTAPK           FV G     SAP+ +P  S         ++      DD  ++E+G+M+PPHE +AR LA++ + S SV EG GRTLKGRDL +VRNA+  +TGFI+
Sbjct:  131 IPTAPKPPQERLPFSASFVGGGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDVVDDDEEEEEGEMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SAA7|S405_ARATH (Protein S40-5 OS=Arabidopsis thaliana OX=3702 GN=S40-5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.780e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0

Query:   79 SSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISS---FSVFEGMGRTLKGRDLSKVRNAILTKTGF 161
            SSAP+N+PDWSK+Y  N        D+  +++ G M+PPHE++A+   R    S    SVFEG+GRTLKGR+L +VR+AI ++TGF
Sbjct:  114 SSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGF 199

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C7N7|S401_ARATH (Protein S40-1 OS=Arabidopsis thaliana OX=3702 GN=S40-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.751e-16
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 0

Query:   37 DFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDG-DMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            DF    +RV   SS  S   PLP+A   V + S         SS P+NIP             Y   +++ DD+ G  M+PPH  + R++   Q++ FSV  G GRTLKGRDLS+VRN++L  TGF+E
Sbjct:   35 DFRENSERVWNKSSRRSKTTPLPSA---VTAFS---------SSLPVNIPMRR----------YSTEEEYSDDDGGRKMIPPHLIVGRRMEGGQMA-FSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SKN0|S404_ARATH (Protein S40-4 OS=Arabidopsis thaliana OX=3702 GN=S40-4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.612e-15
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0

Query:   78 GSSAPMNIPDWSKVYG-------KNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGF 161
             SS P+N+PDWSK+ G       K    +  +GD+    E    VPPHE +A +    +++SFSV EG GRTLKGRDLS+VRN I    G 
Sbjct:   74 ASSLPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCGEGTRRVPPHELLANR----RMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGI 160

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
Match: sp|O80698|S406_ARATH (Protein S40-6 OS=Arabidopsis thaliana OX=3702 GN=S40-6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.101e-14
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 0

Query:   79 SSAPMNIPDWSKVYG-KNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQI----SSFSVFEGMGRTLKGRDLSKVRNAILTKTGF 161
            SSAP+N+PDWSK+Y   +V   +   D+  +DE+  M+PPHE++A+  AR          SVF+G+GRTLKGR+L +VR+AI ++TGF
Sbjct:  114 SSAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGF 201

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XCH7|A0A1S2XCH7_CICAR (Uncharacterized protein LOC101503430 OS=Cicer arietinum OX=3827 GN=LOC101503430 PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 1.260e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFESTMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            MADWGVLKNKSTCFESTMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE
Sbjct:    1 MADWGVLKNKSTCFESTMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8K3G9|A0A8B8K3G9_ABRPR (Uncharacterized protein LOC113852166 OS=Abrus precatorius OX=3816 GN=LOC113852166 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.061e-63
Identity = 115/171 (67.25%), Postives = 128/171 (74.85%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFES-TMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPK---RVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGDDW----HDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            MAD GV  NKS  F    M+D +F+EEDVWSV NER + G K  R  K+SSGSSSAW LP+AP+   R N+ SD     V+GSSAPM+IPDWSK+YGKN     G+ DD      DDED DMVPPHEWIARKLAR+QISSFSV EGMGRTLKGRDLSKVRNAILTKTGFIE
Sbjct:    1 MADQGVFLNKSWGFGGRAMEDKEFDEEDVWSVNNERVESGPKTTRACKESSGSSSAWRLPSAPRKIPRANTASDAS--LVQGSSAPMDIPDWSKIYGKNC--KKGSRDDGVCNKGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILTKTGFIE 167

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S3P4|A0A0S3S3P4_PHAAN (Senescence regulator S40 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G083000 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 5.985e-56
Identity = 102/172 (59.30%), Postives = 119/172 (69.19%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFES-TMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRV-----NSVSDIDDPFVKGSSAPMNIPDWSKVYGKNV---GGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            MAD GV  N+S       M + DF +EDVWSV  E++D      R  K+S GSSS+W LPTA +++     N+    D P +KGSS PM+IPDWSK+YGK+      D G+     DDED DMVPPHEWIARKLAR+QISSFSV EGMGRTLKGRDLSKVRNAIL KTGFIE
Sbjct:    1 MADLGVFLNQSCAAGGGAMGNKDF-DEDVWSVDYEKDDSAPNTTRACKESCGSSSSWRLPTATRKIPRASSNTPPSSDAPLLKGSSEPMDIPDWSKIYGKSCKKGSKDDGSCSKGGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 171

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VFG6|A0A0L9VFG6_PHAAN (Senescence regulator S40 OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0069100 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 5.985e-56
Identity = 102/172 (59.30%), Postives = 119/172 (69.19%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFES-TMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRV-----NSVSDIDDPFVKGSSAPMNIPDWSKVYGKNV---GGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            MAD GV  N+S       M + DF +EDVWSV  E++D      R  K+S GSSS+W LPTA +++     N+    D P +KGSS PM+IPDWSK+YGK+      D G+     DDED DMVPPHEWIARKLAR+QISSFSV EGMGRTLKGRDLSKVRNAIL KTGFIE
Sbjct:    1 MADLGVFLNQSCAAGGGAMGNKDF-DEDVWSVDYEKDDSAPNTTRACKESCGSSSSWRLPTATRKIPRASSNTPPSSDAPLLKGSSEPMDIPDWSKIYGKSCKKGSKDDGSCSKGGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 171

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|V7AHJ7|V7AHJ7_PHAVU (Senescence regulator OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G151500g PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.990e-55
Identity = 94/154 (61.04%), Postives = 111/154 (72.08%), Query Frame = 0

Query:   18 MKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRV-----NSVSDIDDPFVKGSSAPMNIPDWSKVYGKNV---GGDYGNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            M+D D +E DVWSV  +++D   K  R  K+S GSSSAW LP A +++     N+    D P +KGSS PM++PDWSK+YGK+      D G  +   DDED DMVPPHEWIARKLAR+QISSFSV EGMGRTLKGRDLSKVRNAIL KTGFIE
Sbjct:    1 MEDKDLDE-DVWSVEYQKDDSAQKTTRACKESCGSSSAWRLPAATRKIARANSNTPPSSDAPLLKGSSEPMDVPDWSKIYGKSCTKGSRDAGACNKGGDDEDDDMVPPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAILAKTGFIE 153

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A922E4W8|A0A922E4W8_CARIL (Senescence regulator OS=Carya illinoinensis OX=32201 GN=I3842_09G089800 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.042e-53
Identity = 103/194 (53.09%), Postives = 124/194 (63.92%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFE-STMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPK---RVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGD-------------------DWH--------DDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            M DW     K+  F  +T +D DF EEDVW +  ERED G K+   SKD S  SSAW LP+ P+   RVN+ +  +   V+ SSAPM+IPDWSK+YGK  G   G+ D                   ++H        D++DGDMVPPHEWIARKLAR+QISSFSV EG+GRTLKGRDLSKVRNAILTKTGF+E
Sbjct:    1 MTDWNGTMGKTIGFGGTTTRDEDFVEEDVWGLIKEREDSGCKMMGKSKDYSSGSSAWRLPSVPRMIPRVNTPTTHEAKVVQQSSAPMDIPDWSKIYGK--GAKMGSRDASWGDDGDGTGNGVSNDNVEYHGVGDYEADDNDDGDMVPPHEWIARKLARSQISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFLE 192

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8T1PIT3|A0A8T1PIT3_CARIL (Senescence regulator OS=Carya illinoinensis OX=32201 GN=CIPAW_09G092300 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.421e-52
Identity = 103/194 (53.09%), Postives = 123/194 (63.40%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFE-STMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPK---RVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGD-------------------DWH--------DDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            M DW     K+  F  +T +D DF EEDVW    ERED G K+   SKD S  SSAW LP+ P+   RVN+ +  +   V+ SSAPM+IPDWSK+YGK  G   G+ D                   ++H        D++DGDMVPPHEWIARKLAR+QISSFSV EG+GRTLKGRDLSKVRNAILTKTGF+E
Sbjct:    1 MTDWNGTMGKTIGFGGTTTRDEDFVEEDVWGFIKEREDSGCKMMGKSKDYSSGSSAWRLPSVPRMIPRVNTPTTHEAKVVQQSSAPMDIPDWSKIYGK--GAKMGSRDASWGDDGDGTGNGVSNDNVEYHGVGDYEADDNDDGDMVPPHEWIARKLARSQISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFLE 192

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5WJJ6|A0A6P5WJJ6_DURZI (Uncharacterized protein LOC111275199 OS=Durio zibethinus OX=66656 GN=LOC111275199 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.262e-51
Identity = 100/184 (54.35%), Postives = 127/184 (69.02%), Query Frame = 0

Query:    1 MADWGVLKNKST--CFESTMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSSGSSSAWPLPTAPKRV----NSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYG----NGD--------DWH---DDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            MADW  + +K T  C   +M++ DF+ E+VWS   E+ED     ++    SS SSSAW LP+AP+ +    NS + ++    + SSAP+NIPDWSK+YGK+   + G    NGD        D++   DDEDGDMVPPHEW+ARKLAR+QISSFSV EGMGRTLKGRDLSKVRNA+LTKTGF+E
Sbjct:    1 MADWHGIVSKKTGGCSRRSMRNEDFDAEEVWSYEKEKEDSSLAPRKPRDYSSSSSSAWCLPSAPRMIRRVCNSSASLETKVAQQSSAPVNIPDWSKIYGKHAHMENGSWVDNGDGLVYNDDGDYNGCGDDEDGDMVPPHEWLARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFLE 184

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2I4EDW2|A0A2I4EDW2_JUGRE (Uncharacterized protein LOC108988712 OS=Juglans regia OX=51240 GN=LOC108988712 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.795e-51
Identity = 108/196 (55.10%), Postives = 129/196 (65.82%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFE-STMKDNDFNEEDVWSVANEREDFGYKIKRVSKD-SSGSSSAWPLPTAPK---RVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDYGNGD--------------------DWH--------DDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            M DW  +  K++ F  ST +D DF EEDVW    ERED   K+KR SKD SSGSSSAW LP+ P+   RVN+ +  +   V+ SSAPM+IPDWSK+YGK  G   G+ D                    D+H        D++DGDMVPPHEWIARKLA++QISSFSV EG+GRTLKGRDLSKVRNAILTKTGF+E
Sbjct:    1 MTDWNGIMGKTSGFGGSTTRDEDFEEEDVWGFIKEREDSSCKMKRKSKDYSSGSSSAWRLPSVPRMIPRVNTPTTHEAKVVQQSSAPMDIPDWSKIYGK--GAKMGSRDASWVGGGDGTGNGVANDDHVDYHGVGDYEADDNDDGDMVPPHEWIARKLAKSQISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFLE 194

[Close]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445G0L5|A0A445G0L5_GLYSO (Senescence regulator S40 OS=Glycine soja OX=3848 GN=D0Y65_044558 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.155e-49
Identity = 104/185 (56.22%), Postives = 128/185 (69.19%), Query Frame = 0

Query:    1 MADWGVLKNKSTCFES-TMKDNDFNEEDVWSVANERE-DFGYKIKRVSKDSSGSSSAWPLPTAPK---RVNSV------SDIDDPFVKGSSAPMNIPDWSKVYGK--------NVGGDYGNGDDW---HDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSKVRNAILTKTGFIE 163
            MADWG   ++++ F   +M++ DF+EE+VW +  ERE DF     RVSK+S GSSSAW + T+P+   R NSV      SD D   V+ SSAP +IP WSK+YGK        N   D G GD +    D+++ DM+PPHEWIARKLAR+QISSFSV EG+GRTLKGRDLSKVRNAILTKTGFIE
Sbjct:    1 MADWGGFLDQNSGFGGGSMRNEDFDEENVWGLTMERERDFLSPKMRVSKESYGSSSAWLVSTSPRKITRTNSVTLHSLESDSDSNVVQRSSAPTSIPGWSKIYGKKGVEEGVNNKKPDCGFGDHYGDDDDEDEDDMIPPHEWIARKLARSQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFIE 185

The following BLAST results are available for this feature:

BLAST of rna-XM_004486107.3 vs. Araport11
BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL

BLAST of rna-XM_004486107.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
\|	2.549e-39	54.67	Symbols: no symbol available \| no full name availa...	[more]
\|	9.623e-36	51.45	Symbols: no symbol available \| no full name availa...	[more]
\|	6.129e-21	51.19	Symbols: no symbol available \| no full name availa...	[more]
\|	9.905e-19	42.48	Symbols: no symbol available \| no full name availa...	[more]
\|	3.907e-18	48.84	Symbols: no symbol available \| no full name availa...	[more]
\|	1.818e-17	39.84	Symbols: no symbol available \| no full name availa...	[more]
\|	3.741e-16	45.05	Symbols: no symbol available \| no full name availa...	[more]
\|	7.863e-16	38.36	Symbols: no symbol available \| no full name availa...	[more]
\|	7.863e-16	38.36	Symbols: no symbol available \| no full name availa...	[more]
\|	1.136e-15	47.73	Symbols: S40-6 \| \| chr1:22893218-22893829 FORWARD...	[more]

BLAST of rna-XM_004486107.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9LKA1\|S407_ARATH	9.613e-18	42.48	Protein S40-7 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|Q9SAA7\|S405_ARATH	3.780e-17	48.84	Protein S40-5 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|Q9C7N7\|S401_ARATH	1.751e-16	39.84	Protein S40-1 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|Q9SKN0\|S404_ARATH	3.612e-15	45.05	Protein S40-4 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|O80698\|S406_ARATH	1.101e-14	47.73	Protein S40-6 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]

BLAST of rna-XM_004486107.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S2XCH7\|A0A1S2XCH7_CICAR	1.260e-115	100.00	Uncharacterized protein LOC101503430 OS=Cicer arie...	[more]
tr\|A0A8B8K3G9\|A0A8B8K3G9_ABRPR	1.061e-63	67.25	Uncharacterized protein LOC113852166 OS=Abrus prec...	[more]
tr\|A0A0S3S3P4\|A0A0S3S3P4_PHAAN	5.985e-56	59.30	Senescence regulator S40 OS=Vigna angularis var. a...	[more]
tr\|A0A0L9VFG6\|A0A0L9VFG6_PHAAN	5.985e-56	59.30	Senescence regulator S40 OS=Phaseolus angularis OX...	[more]
tr\|V7AHJ7\|V7AHJ7_PHAVU	3.990e-55	61.04	Senescence regulator OS=Phaseolus vulgaris OX=3885...	[more]
tr\|A0A922E4W8\|A0A922E4W8_CARIL	8.042e-53	53.09	Senescence regulator OS=Carya illinoinensis OX=322...	[more]
tr\|A0A8T1PIT3\|A0A8T1PIT3_CARIL	2.421e-52	53.09	Senescence regulator OS=Carya illinoinensis OX=322...	[more]
tr\|A0A6P5WJJ6\|A0A6P5WJJ6_DURZI	1.262e-51	54.35	Uncharacterized protein LOC111275199 OS=Durio zibe...	[more]
tr\|A0A2I4EDW2\|A0A2I4EDW2_JUGRE	4.795e-51	55.10	Uncharacterized protein LOC108988712 OS=Juglans re...	[more]
tr\|A0A445G0L5\|A0A445G0L5_GLYSO	1.155e-49	56.22	Senescence regulator S40 OS=Glycine soja OX=3848 G...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 22..163 e-value: 9.3E-36 score: 135.7
None	No IPR available	PANTHER	PTHR33083	EXPRESSED PROTEIN	coord: 18..162

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:5531608..5532707+
coding sequence from alignment at chr1:5531608..5532707+

mRNA sequence

>rna-XM_004486107.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486107.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486107.3; organism=Cicer arietinum; type=mRNA; length=492bp
ATGGCAGATTGGGGTGTTTTGAAGAACAAAAGCACTTGTTTTGAATCAAC
AATGAAAGACAATGATTTTAATGAAGAAGATGTGTGGAGTGTAGCCAATG
AAAGGGAAGATTTTGGTTACAAAATCAAAAGGGTATCTAAGGATTCCTCT
GGATCTTCCTCTGCATGGCCTTTACCTACTGCTCCAAAAAGGGTTAATTC
TGTTTCTGATATTGATGACCCTTTTGTTAAAGGGTCTTCAGCACCTATGA
ACATTCCTGATTGGTCAAAAGTTTATGGTAAGAATGTTGGTGGTGATTAT
GGTAATGGAGATGATTGGCATGATGATGAAGATGGTGATATGGTTCCTCC
ACATGAATGGATTGCTAGGAAGCTTGCAAGGAACCAGATTTCATCTTTCT
CTGTGTTTGAAGGGATGGGAAGAACACTCAAAGGGAGAGATCTTAGCAAA
GTCAGGAATGCTATTTTAACCAAAACTGGCTTCATTGAGTAG

protein sequence of rna-XM_004486107.3_CaCDCfrontier-NCBI_v1

>rna-XM_004486107.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486107.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486107.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=163bp
MADWGVLKNKSTCFESTMKDNDFNEEDVWSVANEREDFGYKIKRVSKDSS
GSSSAWPLPTAPKRVNSVSDIDDPFVKGSSAPMNIPDWSKVYGKNVGGDY
GNGDDWHDDEDGDMVPPHEWIARKLARNQISSFSVFEGMGRTLKGRDLSK
VRNAILTKTGFIE

mRNA from alignment at chr1:5531608..5532707+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_004486107.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486107.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486107.3; organism=Cicer arietinum; type=mRNA; length=1100bp; location=Sequence derived from: chr1:5531608..5532707+ (Cicer arietinum
GGATTACcaatgttgtagtaattgttgGTAATCCAATAAAGAATTTTGTT
TATGGAAAAATACTAATTTTCCTTTTATAGGGTATTGAAGCAACAGCTAG
GGAGATTCCTGATATTATTCTCTTGAACCTTTCTGCTTTTTGATTCCCAA
GGACAATGGAAAAGATGTCCATTTTATCTCATTACAAATAACCACACTGT
CATTAGTTGGAAAAATAGTTTCAGTTCTCTATGTCTATATATCCTCAAAA
TGGTAGTAAACATTTTTCATCACTACTCATAGCTCATCTCATCAATCTCT
ATCTCTTTATTTACTTACACTCCTCTGTCTTTTCATAACTACTCCTTTCA
CTTCATTCATTAGCAATGGCAGATTGGGGTGTTTTGAAGAACAAAAGCAC
TTGTTTTGAATCAACAATGAAAGACAATGATTTTAATGAAGAAGATGTGT
GGAGTGTAGCCAATGAAAGGGAAGATTTTggttacaaaatcaaaagggtA
TCTAAGGATTCCTCTGGATCTTCCTCTGCATGGCCTTTACCTACTGCTCC
AAAAAGGGTTAATTCTGTTTCTGATATTGATGACCCTTTTGTTAAAGGGT
CTTCAGCACCTATGAACATTCCTGATTGGTCAAAAGTTTATGGTAAGAAT
GTTGGTGGTGATTATGGTAATGGAGATGATTGGCATGATGATGAAGATGG
TGATATGGTTCCTCCACATGAATGGATTGCTAGGAAGCTTGCAAGGAACC
AGATTTCATCTTTCTCTGTGTTTGAAGGGATGGGAAGAACACTCAAAGGG
AGAGATCTTAGCAAAGTCAGGAATGCTATTTTAACCAAAACTGGCTTCAT
TGAGTAGTGTAGTTTAGTTCATGTGTGTTTGATTAAATCATTGAGTTCAT
GAGTTGTCAAGTTTAGTGGTTCGTAAACTAGTTAAGTACTTGAGTTTCAA
ATTTTGGCACCATTACTAGTCATTTCTTCTATCATTTGTATGCCTTTGGA
TCCCAtgcatttgttttgttttgtttttttattattaataatattattat
caatgatATATACATAGTATTTTTAGTATGATTTATGGTGTTTGGTGCTA

Coding sequence (CDS) from alignment at chr1:5531608..5532707+

>rna-XM_004486107.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004486107.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004486107.3; organism=Cicer arietinum; type=CDS; length=492bp; location=Sequence derived from: chr1:5531608..5532707+ (Cicer arietinum
ATGGCAGATTGGGGTGTTTTGAAGAACAAAAGCACTTGTTTTGAATCAAC
AATGAAAGACAATGATTTTAATGAAGAAGATGTGTGGAGTGTAGCCAATG
AAAGGGAAGATTTTggttacaaaatcaaaagggtATCTAAGGATTCCTCT
GGATCTTCCTCTGCATGGCCTTTACCTACTGCTCCAAAAAGGGTTAATTC
TGTTTCTGATATTGATGACCCTTTTGTTAAAGGGTCTTCAGCACCTATGA
ACATTCCTGATTGGTCAAAAGTTTATGGTAAGAATGTTGGTGGTGATTAT
GGTAATGGAGATGATTGGCATGATGATGAAGATGGTGATATGGTTCCTCC
ACATGAATGGATTGCTAGGAAGCTTGCAAGGAACCAGATTTCATCTTTCT
CTGTGTTTGAAGGGATGGGAAGAACACTCAAAGGGAGAGATCTTAGCAAA
GTCAGGAATGCTATTTTAACCAAAACTGGCTTCATTGAGTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007608	Senescence_reg_S40

Search form

rna-XM_004486107.3