rna-XM_004493523.3

Transcript Overview
Namerna-XM_004493523.3
Unique Namerna-XM_004493523.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length879
Productzinc finger CCCH domain-containing protein 14-like
References
External references for this mRNA
DatabaseAccession
GeneID101506069
GenBankXM_004493523.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:29972277..29975366 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL081Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL127Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL331Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL409Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0391Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0573Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0757Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanR097Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0258Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0315Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR230Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canpvR175Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cantifR164Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR177Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR168Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR182Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR221Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR191Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvrvR221Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvssR224Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR244Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR133Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR142Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR149Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR187Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR193Pisum sativum Cameor genome v1aPisum sativum
canpsR206Pisum sativum Cameor genome v1aPisum sativum
avjcanL297Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL379Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR132Cicer arietinum
cancarR162Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g023600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va02G005720.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg32818.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun01g123800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_05939.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr07.1794Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va03G067010.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.001G141900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_06907Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.5g091720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_02852Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg595.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.5g113120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.007G259300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014659056.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan02g025500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr01.1206Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat03G0235400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_014639381.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.3g030400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_22512Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004497842.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_14190Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_07307Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_07374.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101506069gene-LOC101506069_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004493523.3-1exon-XM_004493523.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004493523.3-2exon-XM_004493523.3-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004493523.3-3exon-XM_004493523.3-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004493580.1cds-XP_004493580.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS
cds-XP_004493580.1cds-XP_004493580.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004493580.1cds-XP_004493580.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004493523.3_CaCDCfrontier-NCBI_v1rna-XM_004493523.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004493523.3_CaCDCfrontier-NCBI_v1rna-XM_004493523.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ1 | | chr3:3864486-3866406 REVERSE LENGTH=248)

HSP 1 Score: 271.937 bits (694), Expect = 2.081e-91
Identity = 162/301 (53.82%), Postives = 186/301 (61.79%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGF---NNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSA--PPKSNQGAPGAPGH----HHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E G    N GG+KKS+QEM+S STG+GSKSKPCTKFFSTSGCPFGE+CHFLHYVPGGYNAV+QM N+ P  P   RN+                        +  G +F  +     GE                 GP +V  F              G +ATA+ SV+ASLAGAIIGKGGV+SKQICRQTG KLSI+DHE DPNL+NI LEG  EQI +AS MVKDL+  L  +A  PP    G  G  G     H GSNFKTK+CE F+KG+CTFGDRCHFAHG AELRK
Sbjct:    1 MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQ----------------------GSGNGGRFSGR-----GES----------------GPGHVSNF--------------GDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAELRK 244
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ2 | | chr5:2090937-2092179 REVERSE LENGTH=218)

HSP 1 Score: 204.142 bits (518), Expect = 4.101e-65
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 0 
Query:  100 KSRICNKFNTAEGCKFGDKCHFAH---GEWE-------LGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            KS+ C KF +  GC FGD CHF H   G +        L  PV+    + +  G P  GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   16 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPG-GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 214

HSP 2 Score: 103.99 bits (258), Expect = 1.766e-26
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0 
Query:   24 EMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNV 84
            EM+S+STG+GSKSKPCTKFFSTSGCPFG++CHFLHYVPGGYNA AQM NL P      RN+
Sbjct:    5 EMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM 65
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ2 | | chr5:2090937-2092787 REVERSE LENGTH=240)

HSP 1 Score: 204.142 bits (518), Expect = 6.509e-65
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 0 
Query:  100 KSRICNKFNTAEGCKFGDKCHFAH---GEWE-------LGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            KS+ C KF +  GC FGD CHF H   G +        L  PV+    + +  G P  GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   38 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPG-GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 236

HSP 2 Score: 128.257 bits (321), Expect = 2.079e-35
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN---NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNV 84
            MD RKRGR E   +   NGGFK+S+QEM+S+STG+GSKSKPCTKFFSTSGCPFG++CHFLHYVPGGYNA AQM NL P      RN+
Sbjct:    1 MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM 87
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ2 | | chr5:2090937-2091578 REVERSE LENGTH=213)

HSP 1 Score: 195.282 bits (495), Expect = 8.097e-62
Identity = 106/196 (54.08%), Postives = 135/196 (68.88%), Query Frame = 0 
Query:  107 FNTAEGCKFGDKCHFAH---GEWE-------LGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            + +  GC FGD CHF H   G +        L  PV+    + +  G P  GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   18 YCSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPG-GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 209

HSP 2 Score: 68.5514 bits (166), Expect = 1.735e-13
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:   42 FFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNV 84
            + STSGCPFG++CHFLHYVPGGYNA AQM NL P      RN+
Sbjct:   18 YCSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM 60
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ2 | | chr5:2090937-2091578 REVERSE LENGTH=213)

HSP 1 Score: 195.282 bits (495), Expect = 8.097e-62
Identity = 106/196 (54.08%), Postives = 135/196 (68.88%), Query Frame = 0 
Query:  107 FNTAEGCKFGDKCHFAH---GEWE-------LGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            + +  GC FGD CHF H   G +        L  PV+    + +  G P  GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   18 YCSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPG-GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 209

HSP 2 Score: 68.5514 bits (166), Expect = 1.735e-13
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:   42 FFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNV 84
            + STSGCPFG++CHFLHYVPGGYNA AQM NL P      RN+
Sbjct:   18 YCSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM 60
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ2 | | chr5:2090937-2091578 REVERSE LENGTH=213)

HSP 1 Score: 195.282 bits (495), Expect = 8.097e-62
Identity = 106/196 (54.08%), Postives = 135/196 (68.88%), Query Frame = 0 
Query:  107 FNTAEGCKFGDKCHFAH---GEWE-------LGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            + +  GC FGD CHF H   G +        L  PV+    + +  G P  GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   18 YCSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPG-GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 209

HSP 2 Score: 68.5514 bits (166), Expect = 1.735e-13
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:   42 FFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNV 84
            + STSGCPFG++CHFLHYVPGGYNA AQM NL P      RN+
Sbjct:   18 YCSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM 60
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ1 | | chr3:3864486-3865016 REVERSE LENGTH=176)

HSP 1 Score: 186.422 bits (472), Expect = 7.939e-59
Identity = 102/156 (65.38%), Postives = 116/156 (74.36%), Query Frame = 0 
Query:  143 GPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSA--PPKSNQGAPGAPGH----HHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            G  N GRF GR E  PG  ++FG +ATA+ SV+ASLAGAIIGKGGV+SKQICRQTG KLSI+DHE DPNL+NI LEG  EQI +AS MVKDL+  L  +A  PP    G  G  G     H GSNFKTK+CE F+KG+CTFGDRCHFAHG AELRK
Sbjct:   17 GSGNGGRFSGRGESGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAELRK 172
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: KHZ2 | | chr5:2090937-2091443 REVERSE LENGTH=168)

HSP 1 Score: 183.341 bits (464), Expect = 1.102e-57
Identity = 91/145 (62.76%), Postives = 114/145 (78.62%), Query Frame = 0 
Query:  148 GRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   23 GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 164
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:6707544-6708864 FORWARD LENGTH=386)

HSP 1 Score: 57.3806 bits (137), Expect = 3.785e-9
Identity = 40/119 (33.61%), Postives = 52/119 (43.70%), Query Frame = 0 
Query:   35 KSKPCTKFFSTSGCPFGESCHFLH-----------------YVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAP--NGSAPSAV--KSRICNKFNTAEGCKFGDKCHFAHGEWELGKPV 132
            + K C KF     CP+G+ C+F+H                  +  G  A  Q  + A       R  + P  AP  NG     V  K+R+C KF+    C FGDKCHFAHG+ EL   V
Sbjct:  185 RMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
[Close]
BLAST of rna-XM_004493523.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:6707544-6708864 FORWARD LENGTH=386)

HSP 1 Score: 57.3806 bits (137), Expect = 3.785e-9
Identity = 40/119 (33.61%), Postives = 52/119 (43.70%), Query Frame = 0 
Query:   35 KSKPCTKFFSTSGCPFGESCHFLH-----------------YVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAP--NGSAPSAV--KSRICNKFNTAEGCKFGDKCHFAHGEWELGKPV 132
            + K C KF     CP+G+ C+F+H                  +  G  A  Q  + A       R  + P  AP  NG     V  K+R+C KF+    C FGDKCHFAHG+ EL   V
Sbjct:  185 RMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q7F8R0|C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 7.801e-113
Identity = 185/293 (63.14%), Postives = 215/293 (73.38%), Query Frame = 0 
Query:    4 RKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLA-PAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPA--ASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGA-PGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            RKRG+ + G N  G K++R E +S  TGVGSKSKPCTKFFSTSGCPFGE CHFLH+ PGGY AVA+M NL  PA  P P  +      P+G     VK+R+CNK+NTAEGCK+GDKCHFAHGE ELGKP+        PMGP   G F     P P  +  ASFGA+ATAKISV+ASLAG IIG+GGVN+KQI R TGAKL+IRDHESD NL+NIELEG F+QIK+AS MV++L+V++   APP+  +       G   GSNFKTKLCENFTKGSCTFGDRCHFAHG  ELRK
Sbjct:    6 RKRGKPD-GANGAGGKRAR-ESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGGPAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGKPMLMDSSMPPPMGPRPTGHFAPPPMPSPAMSTPASFGASATAKISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIVSIGGGAPPQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRK 296
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q69XQ3|C3H44_ORYSJ (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.090e-105
Identity = 175/288 (60.76%), Postives = 203/288 (70.49%), Query Frame = 0 
Query:   14 NNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMN---LAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMG------PPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
             NG  K++R   +S   GVGSK KPCTKFFSTSGCPFG SCHFLH  PGGY A A+M +    A AAPP    + P   APNG   S+VK+R+CNK+NTAEGCK+G KCHFAHGE ELGKP+        PMG      PP  G       P   P ++FGA+ATAKISV+ASLAG IIGKGG N+K I R TGAKL+IRD+ES+PNL+NIELEG F+QIK AS MV +L+V +  +APP  N G  G+     GSNFKTKLCENF KGSCTFGDRCHFAHG +ELRK
Sbjct:   14 TNGAAKRARAS-ESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMTSHGGTAVAAPPGRMPLGP--GAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKPMLLDNSMPHPMGSMPFEAPPMPG-------PDIVPPSTFGASATAKISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELIVRISGNAPPAKNPGR-GSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGESELRK 290
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q7XPK1|C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.269e-102
Identity = 181/301 (60.13%), Postives = 206/301 (68.44%), Query Frame = 0 
Query:    4 RKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAP-SAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAA-----SFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPK------SNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            RKR R +         K  +E +S  TG+ SK KPCTKFFST GCPFGE CHF H+VPGGY AVA+ +NL   A PAP        A   S P S+ K+R+C K+NTAEGCKFGDKCHFAHGE ELGKP   S +    M PP  GR+GGR EPPP  A      +FGA+ATAKISV+ASLAG IIGKGGVN+KQICR TG KLSIRDHESD NL+NIELEGNF+QIK ASNMV +L+ T+  S P K      +     G  G    SN+KTKLCENF KG+CTFGDRCHFAHG  E RK
Sbjct:    8 RKRSRPDTANGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHES--AMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVGELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHFAHGENEQRK 306
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BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C7C3|C3H36_ARATH (Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=At3g12130 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.985e-90
Identity = 162/301 (53.82%), Postives = 186/301 (61.79%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGF---NNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSA--PPKSNQGAPGAPGH----HHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E G    N GG+KKS+QEM+S STG+GSKSKPCTKFFSTSGCPFGE+CHFLHYVPGGYNAV+QM N+ P  P   RN+                        +  G +F  +     GE                 GP +V  F              G +ATA+ SV+ASLAGAIIGKGGV+SKQICRQTG KLSI+DHE DPNL+NI LEG  EQI +AS MVKDL+  L  +A  PP    G  G  G     H GSNFKTK+CE F+KG+CTFGDRCHFAHG AELRK
Sbjct:    1 MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQ----------------------GSGNGGRFSGR-----GES----------------GPGHVSNF--------------GDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAELRK 244
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FG30|C3H52_ARATH (Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=At5g06770 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.222e-64
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 0 
Query:  100 KSRICNKFNTAEGCKFGDKCHFAH---GEWE-------LGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            KS+ C KF +  GC FGD CHF H   G +        L  PV+    + +  G P  GRF GR +P  GP + FGA +T+KISV+ASLAGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG FEQI  AS MV++L+  L     P+   G  G P  H GSN+KTK+C+ ++KG+CT+GDRCHFAHG +ELR+
Sbjct:   38 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPG-GRFSGRGDPGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKP--HPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRR 236

HSP 2 Score: 128.257 bits (321), Expect = 1.999e-34
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN---NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNV 84
            MD RKRGR E   +   NGGFK+S+QEM+S+STG+GSKSKPCTKFFSTSGCPFG++CHFLHYVPGGYNA AQM NL P      RN+
Sbjct:    1 MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM 87
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BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q84UQ3|C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 8.284e-9
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 0 
Query:   35 KSKPCTKFFSTSGCPFGESCHFLH-YVPGGYNAVAQMMNLAPAAPPAPRNVA----------PPPHAPNG--SAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGK 130
            K + C KF++  GCP+G++C FLH        +VA  ++L+P+        +              A NG    PS  K+RICNK+     C FG KCHFAHG  EL K
Sbjct:  171 KGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVA--ISLSPSVGGGGGGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LT81|C3H39_ARATH (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.725e-8
Identity = 40/119 (33.61%), Postives = 52/119 (43.70%), Query Frame = 0 
Query:   35 KSKPCTKFFSTSGCPFGESCHFLH-----------------YVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAP--NGSAPSAV--KSRICNKFNTAEGCKFGDKCHFAHGEWELGKPV 132
            + K C KF     CP+G+ C+F+H                  +  G  A  Q  + A       R  + P  AP  NG     V  K+R+C KF+    C FGDKCHFAHG+ EL   V
Sbjct:  185 RMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XRV3|A0A1S2XRV3_CICAR (Zinc finger CCCH domain-containing protein 14-like OS=Cicer arietinum OX=3827 GN=LOC101506069 PE=4 SV=1)

HSP 1 Score: 599.742 bits (1545), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MDMRKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK
Sbjct:    1 MDMRKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4XXR1|A0A9D4XXR1_PEA (C3H1-type domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_032354 PE=4 SV=1)

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 267/299 (89.30%), Postives = 277/299 (92.64%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFNN-GGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHA--PNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGG-RMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHH---HGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR EHG+NN GGFKKSRQEM SLSTGVGSKSKPCTKFFSTSGCPFGE+CHFLHYVPGG+NAVAQMMNL PAAPPAPRNVA PPHA  PNGSAPSAVKSRICN+FNTAEGCKFGDKCHFAHGEWELGKPVA SFDDHR MGPPNVGR GG RMEPPPGP  SFGA ATAKISVEAS+AGAIIGKGGVNSKQICRQTGAKLSIRDHESD NLRNIELEG FEQIKDASNMVKDLL+TLQMSAPPK+ QG PGAPGHH   HGSNFKTKLCENFTKGSCTFG+RCHFAHGA+E+RK
Sbjct:    1 MDARKRGRPEHGYNNNGGFKKSRQEMQSLSTGVGSKSKPCTKFFSTSGCPFGETCHFLHYVPGGFNAVAQMMNLTPAAPPAPRNVAAPPHAHAPNGSAPSAVKSRICNRFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRHMGPPNVGRMGGHRMEPPPGPTTSFGATATAKISVEASMAGAIIGKGGVNSKQICRQTGAKLSIRDHESDQNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTTQGPPGAPGHHHGNHGSNFKTKLCENFTKGSCTFGERCHFAHGASEMRK 299
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|V7CYE7|V7CYE7_PHAVU (C3H1-type domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G141900g PE=4 SV=1)

HSP 1 Score: 521.931 bits (1343), Expect = 0.000e+0
Identity = 254/293 (86.69%), Postives = 268/293 (91.47%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E GFN NGGFKKS+QEM+SLSTGVGSKSKPCTKFFSTSGCPFGE CHFLHYVPGGYNAVA +MNL PAAPPAPRNVA  P  PNGSAPSAVK+RICNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR MGP   GRF GRMEP PGPA SFG++ATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPN+RNIELEGNFEQIK+ASNMVKDLL+TLQMSA  K+NQG PGAP   HGSNFKTKLCENF+KGSCTFG+RCHFAHGAAELRK
Sbjct:    1 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPAPRNVAALPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTASGRFAGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASSKANQGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRK 293
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LYN3|A0A2Z6LYN3_TRISU (C3H1-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_331160 PE=4 SV=1)

HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 266/299 (88.96%), Postives = 275/299 (91.97%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGG-RMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQ-----GAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD+RKRGR EHGFN NGGFKKSR EM SLSTGVGSKSKPCTKFFSTSGCPFGESCHFLH+VPGGYNA AQMMNL PAAPPAPRNVAPPPH PNGSAPS+VKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVA SFDDHR MGPPNVGRFGG RMEPPPGP  SFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKL+IR+HE+DPNLRNIELEG FEQIKDASNMVKDLL+TLQMSAPPK++Q     G PG    HHGSNFKTKLCENF KGSCTFGDRCHFAHGAAELRK
Sbjct:    1 MDIRKRGRPEHGFNTNGGFKKSRHEMQSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHHVPGGYNAAAQMMNLTPAAPPAPRNVAPPPHVPNGSAPSSVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRGMGPPNVGRFGGHRMEPPPGPTTSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIREHEADPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTSQGGGGGGGPGGAPGHHGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRK 299
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|C6TAD1|C6TAD1_SOYBN (C3H1-type domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 257/293 (87.71%), Postives = 268/293 (91.47%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E GF+ NGGFKKS+QEM+SLSTGVGSKSKPCTKFFST+GCPFGE CHFLHYVPGGYNAVA MMNL PAAPPA RNVA PP  PNGSAP AVK+RICNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR MGP  VGR  GRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPNLRNIELEG+F QIK+ASNMVKDLL+TLQMSAPPK+  G PGAP   HGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK
Sbjct:    1 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAAPPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFVQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPA-SHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2R2B2|A0A0B2R2B2_GLYSO (Zinc finger CCCH domain-containing protein 14 OS=Glycine soja OX=3848 GN=glysoja_029338 PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 257/293 (87.71%), Postives = 268/293 (91.47%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E GF+ NGGFKKS+QEM+SLSTGVGSKSKPCTKFFST+GCPFGE CHFLHYVPGGYNAVA MMNL PAAPPA RNVA  P  PNGSAP AVK+RICNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR MGP  VGR  GRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPNLRNIELEG+FEQIK+ASNMVKDLL+TLQMSAPPK+  G PGAP   HGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK
Sbjct:    1 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPA-SHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
[Close]
BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|I1N979|I1N979_SOYBN (C3H1-type domain-containing protein OS=Glycine max OX=3847 GN=100803981 PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 257/293 (87.71%), Postives = 268/293 (91.47%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E GF+ NGGFKKS+QEM+SLSTGVGSKSKPCTKFFST+GCPFGE CHFLHYVPGGYNAVA MMNL PAAPPA RNVA  P  PNGSAP AVK+RICNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR MGP  VGR  GRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPNLRNIELEG+FEQIK+ASNMVKDLL+TLQMSAPPK+  G PGAP   HGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK
Sbjct:    1 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPA-SHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8L3K4|A0A8B8L3K4_ABRPR (Zinc finger CCCH domain-containing protein 31 isoform X1 OS=Abrus precatorius OX=3816 GN=LOC113861940 PE=4 SV=1)

HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0
Identity = 252/293 (86.01%), Postives = 268/293 (91.47%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD+RKRGR EH FN NGG KKS+QEM+SLSTGVGSKSKPCTKFFST+GCPFGE CHFLH+VPGGYNAVAQMMNL PAAPPA RNVA PP  PNGS P AVK+R+CNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR MGPP  GR GGRMEPPPGPA+SFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPNLRNIELEG+FEQIK+ASNMVKDLL+TLQMSA PK+  G PGAP   HGSN+KTKLCENF KGSCTFG+RCHFAHGAAELRK
Sbjct:    1 MDIRKRGRPEHSFNINGGLKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHFVPGGYNAVAQMMNLTPAAPPASRNVAAPPPVPNGSTPPAVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPPAAGRIGGRMEPPPGPASSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSALPKTTAGVPGAPA-PHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRK 292
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6M9V4|A0A4D6M9V4_VIGUN (Far upstream element-binding protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2220 PE=4 SV=1)

HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0
Identity = 251/293 (85.67%), Postives = 267/293 (91.13%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E GFN NGGFKKS+QEM+SLSTGVGSKSKPCTKFFSTSGCPFGE CHFLHYVPGGYNAVA +MNL PAAPPA RNVA  P  PNGSAP+AVK+RICNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR +GP   GRFGGRMEP PGPA SFG++ATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPN+RNIELEGNFEQIK+ASNMVKDLL+TLQMSA  K+N G PGAP   HGSNFKTKLCENF+KGSCTFG+RCHFAHGAAELRK
Sbjct:    1 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPAAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGPTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSA-SKANPGVPGAPTREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRK 292
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8T0L6T9|A0A8T0L6T9_PHAAN (Zinc finger CCCH domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0049600 PE=4 SV=1)

HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0
Identity = 251/293 (85.67%), Postives = 267/293 (91.13%), Query Frame = 0 
Query:    1 MDMRKRGRSEHGFN-NGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 292
            MD RKRGR E GFN NGGFKKS+QEM+SLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVA +MNL PAAPPA RNVA  P  PNGSAP AVK+RICNKFNTAEGCKFGDKCHFAHGEWELGK +APSFDDHR +GP   GRFGGRMEP PGPA SFG++ATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIR+HESDPN+RNIELEGNFEQIK+ASNMVKDLL+TLQMSA  K+N G PGAP   HGSNFKTKLCENF+KGSCTFG+RCHFAHGA+ELRK
Sbjct:    1 MDTRKRGRLEFGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGPTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSA-SKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGASELRK 292
The following BLAST results are available for this feature:
BLAST of rna-XM_004493523.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
|2.081e-9153.82Symbols: KHZ1 | | chr3:3864486-3866406 REVERSE LE... [more]
|4.101e-6554.68Symbols: KHZ2 | | chr5:2090937-2092179 REVERSE LE... [more]
|6.509e-6554.68Symbols: KHZ2 | | chr5:2090937-2092787 REVERSE LE... [more]
|8.097e-6254.08Symbols: KHZ2 | | chr5:2090937-2091578 REVERSE LE... [more]
|8.097e-6254.08Symbols: KHZ2 | | chr5:2090937-2091578 REVERSE LE... [more]
|8.097e-6254.08Symbols: KHZ2 | | chr5:2090937-2091578 REVERSE LE... [more]
|7.939e-5965.38Symbols: KHZ1 | | chr3:3864486-3865016 REVERSE LE... [more]
|1.102e-5762.76Symbols: KHZ2 | | chr5:2090937-2091443 REVERSE LE... [more]
|3.785e-933.61Symbols: no symbol available | no full name availa... [more]
|3.785e-933.61Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004493523.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
sp|Q7F8R0|C3H14_ORYSJ7.801e-11363.14Zinc finger CCCH domain-containing protein 14 OS=O... [more]
sp|Q69XQ3|C3H44_ORYSJ2.090e-10560.76Zinc finger CCCH domain-containing protein 44 OS=O... [more]
sp|Q7XPK1|C3H31_ORYSJ2.269e-10260.13Zinc finger CCCH domain-containing protein 31 OS=O... [more]
sp|Q9C7C3|C3H36_ARATH1.985e-9053.82Zinc finger CCCH domain-containing protein 36 OS=A... [more]
sp|Q9FG30|C3H52_ARATH6.222e-6454.68Zinc finger CCCH domain-containing protein 52 OS=A... [more]
sp|Q84UQ3|C3H56_ORYSJ8.284e-936.70Zinc finger CCCH domain-containing protein 56 OS=O... [more]
sp|Q9LT81|C3H39_ARATH3.725e-833.61Zinc finger CCCH domain-containing protein 39 OS=A... [more]
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BLAST of rna-XM_004493523.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XRV3|A0A1S2XRV3_CICAR0.000e+0100.00Zinc finger CCCH domain-containing protein 14-like... [more]
tr|A0A9D4XXR1|A0A9D4XXR1_PEA0.000e+089.30C3H1-type domain-containing protein OS=Pisum sativ... [more]
tr|V7CYE7|V7CYE7_PHAVU0.000e+086.69C3H1-type domain-containing protein OS=Phaseolus v... [more]
tr|A0A2Z6LYN3|A0A2Z6LYN3_TRISU0.000e+088.96C3H1-type domain-containing protein OS=Trifolium s... [more]
tr|C6TAD1|C6TAD1_SOYBN0.000e+087.71C3H1-type domain-containing protein OS=Glycine max... [more]
tr|A0A0B2R2B2|A0A0B2R2B2_GLYSO0.000e+087.71Zinc finger CCCH domain-containing protein 14 OS=G... [more]
tr|I1N979|I1N979_SOYBN0.000e+087.71C3H1-type domain-containing protein OS=Glycine max... [more]
tr|A0A8B8L3K4|A0A8B8L3K4_ABRPR0.000e+086.01Zinc finger CCCH domain-containing protein 31 isof... [more]
tr|A0A4D6M9V4|A0A4D6M9V4_VIGUN0.000e+085.67Far upstream element-binding protein OS=Vigna ungu... [more]
tr|A0A8T0L6T9|A0A8T0L6T9_PHAAN0.000e+085.67Zinc finger CCCH domain-containing protein OS=Phas... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:4.10.1000.10:FF:000003coord: 93..130
e-value: 2.7E-14
score: 54.3
NoneNo IPR availableFUNFAMG3DSA:4.10.1000.10:FF:000003coord: 256..292
e-value: 1.6E-15
score: 58.2
NoneNo IPR availableGENE3D4.10.1000.10coord: 93..130
e-value: 3.4E-10
score: 41.1
coord: 260..292
e-value: 1.2E-12
score: 48.9
NoneNo IPR availablePFAMPF14608zf-CCCH_2coord: 38..58
e-value: 260.0
score: 13.6
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 167..231
score: 14.801689
NoneNo IPR availableCDDcd22464KH-I_AtC3H36_likecoord: 170..235
e-value: 1.01984E-41
score: 136.45
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 169..232
e-value: 2.9E-10
score: 51.0
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 163..259
e-value: 6.9E-16
score: 60.0
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 157..239
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 262..286
e-value: 5.7E-5
score: 34.2
coord: 100..125
e-value: 0.051
score: 24.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 261..288
score: 16.426794
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 98..126
score: 13.187555
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 33..61
score: 12.708712
IPR045877RNA-binding protein ZFP36-likePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 59..288
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 34..59
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 261..291
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 97..129

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004493523.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004493523.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004493523.3; organism=Cicer arietinum; type=mRNA; length=879bp
ATGGATATGCGCAAGAGAGGAAGGTCTGAACACGGATTCAACAATGGAGG
ATTTAAGAAATCAAGACAAGAAATGGACTCCTTATCAACTGGTGTAGGAA
GCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGATGCCCATTT
GGCGAGAGCTGCCACTTCTTGCACTATGTTCCGGGCGGTTATAATGCTGT
TGCCCAGATGATGAATCTAGCACCTGCAGCGCCTCCTGCTCCTAGAAATG
TTGCCCCCCCACCACATGCTCCCAATGGGTCTGCACCATCTGCTGTTAAA
AGCCGTATATGCAACAAGTTTAATACTGCAGAAGGCTGCAAATTTGGCGA
CAAATGCCATTTTGCTCACGGTGAATGGGAACTTGGGAAGCCTGTTGCTC
CATCATTTGATGATCACCGTCCCATGGGACCCCCCAATGTAGGTCGTTTT
GGTGGTCGAATGGAGCCTCCTCCTGGTCCCGCTGCCAGCTTTGGTGCCAA
TGCCACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATCG
GTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCCAAA
CTTTCAATTCGAGATCATGAGTCTGACCCAAATCTTAGGAACATTGAACT
TGAGGGAAATTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATT
TACTGGTGACCCTGCAAATGTCTGCACCACCTAAATCAAACCAAGGTGCT
CCTGGTGCCCCTGGCCATCATCATGGAAGCAACTTCAAAACAAAACTGTG
TGAGAATTTTACAAAAGGATCTTGCACTTTTGGAGATAGATGTCATTTTG
CACATGGAGCGGCTGAATTGCGAAAATGA
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protein sequence of rna-XM_004493523.3_CaCDCfrontier-NCBI_v1

>rna-XM_004493523.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004493523.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004493523.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=292bp
MDMRKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPF
GESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVK
SRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRF
GGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAK
LSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGA
PGAPGHHHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK
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mRNA from alignment at chr3:29972277..29975366+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004493523.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004493523.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004493523.3; organism=Cicer arietinum; type=mRNA; length=3090bp; location=Sequence derived from: chr3:29972277..29975366+ (Cicer arietinum
TactgcaaaaaaataaattataacttttcATTCTCGCTCTTTTTATTACA
CCCACCGCCATCAtctatcttttctttttttcttctttctccaaAACCCC
TCTCTTCTTTCGGGGGTCATTgctagggttagggttagggtttttcTACT
TCCTTCCCAACTTCCATCCATTCCTTTCAAGATCTCTCTAACTCACTCTC
GAATTGAGACCTTTTCCTCTAAGGTATCTTCTAGAATCTTCTGTTCGTTG
AGTTCATTCTTTATTCCGAATCTCGATCTATGGATATGCGCAAGAGAGGA
AGGTCTGAACACGGATTCAACAATGGAGGATTTAAGAAATCAAGACAAGG
TGTGTTTCTTTAACTTTATCAATCTTTCTAATGTGTTTCTTTCTGTTGCT
TCGATTTGGTTTCTACTGTAAATTTATCTGCTTTTTATGTGGTTTAAGTA
AATTGTGATACTTCTGTTTGcgcttatttttcttttgttgttgctTGTGT
GTTTACATGTGTGTGAAATACAGTATGTGTAATTGAAAATTGTTCTTCAA
TTGTTTGTTgccaaatttcactaaaaaacttttaaaattgtaaaaattta
tgGTATAGTGCTAATTCAGGAAATAATTCTCTCTCCCACGCTCGTGCATA
TACCTAAAACTGTCGTTAAATTGATTCAGATTCGTCAAATTTTCAGTAGT
TGGGGGCGGGGCGTTggaaaacatattaaatattaattgatgtTATTGCA
ACCTTTTATAAACTCAGAATGTAAACACTCTTCCAAAAGTTGTTATGTAT
GATAATAAACTCGGAACATGTAAAAAAACCTTCATAAAAATTATGACGTC
TGATGATGAACTAAGAACATGTAAACACAAAAATATCTAATATTGTATCA
CTCAAAAGTAagtatattcatatatattttattttaaaaactgttaATAG
CTTTTGAGTATAGTGTAATAGATTAATAAAGGGAGGATGTTAACTGAGAA
CAAGTAATAATGTTTTGCAACAGAAATGGACTCCTTATCAACTGGTGTAG
GAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGGTTCAAGTCTATTCCT
GTCTAAATAAATACATTGAACtgtcatattttatatttataatagcatat
tattataattattttaataattaattttagaattgCTTTAAAACTACAAT
TCTGCTAATTAACTTGATATATGAAGCTCTTATACAGGTACAACACTGTT
CTTTGGTCTAAACAAGTAAAAGATTAGTGGTTTATAAACAGAGTTTGTAA
AAGATTAGACTTTGCAGGACAATAATTGGGTCGGAGACCACTATCATCAA
TGATAAATCGACCATTTTTTCCACTCATGTTTAGCCTAATTAATTTctat
tcattttaatcattttaacaACAAGCTTTCAGCTCATAAGGGTTTTAATA
GTTTATGAACCAACATTTGATTGGTAAGCTATCAACTAACTAGCATGAAT
TAAACATTTTGATTGGTTGGGTCAGGTATGATGTCCAAACTGTACATATA
AATTAGTAGTTTTGTACTGTACATGTTTGTTTGAGGATATAGAGACACAT
ATTTTTGGTTATCCATAACATTGAACAAGAAACAATTCTATTCAATCACA
GATTCTAATTATATGAAACTTTCACCGCGAAACAAATGATGCAAAACCAA
CCCTCTTATTATTTCTCTAATGGTTGGCAATTGTTTGAAGCTGATCTGTT
TGTCACCACTTGGCAACATTGTTTATCTTATCCCATTTTGTTTTTCTGCT
TCTCCCATTGTTTATTAACTTCGAAACACAAATGTTTTTCATTAGTTGCT
TGTGATGAGGTGATTGAGTAATACCCTccgaataaataaatttatctttt
aattcttTTGCCTTTGCTTGCCAAATAATCCATGGATCTCGTTTTATATT
GATGCTCATGTACTGGAGGAGTTGAAAAGTAATTAATATGTTCCCTTGTT
CCTTGTCCTTAGGAACTGGGGGTTAAGAGTGTCCATGGCATTTGTGTGTC
ATCTTTAGTAATGATTTAATGTTAATCTGATCAAGCCATATTTGTTTTGC
AGCACTTCTGGATGCCCATTTGGCGAGAGCTGCCACTTCTTGCACTATGT
TCCGGGCGGTTATAATGCTGTTGCCCAGATGATGAATCTAGCACCTGCAG
CGCCTCCTGCTCCTAGAAATGTTGCCCCCCCACCACATGCTCCCAATGGG
TCTGCACCATCTGCTGTTAAAAGCCGTATATGCAACAAGTTTAATACTGC
AGAAGGCTGCAAATTTGGCGACAAATGCCATTTTGCTCACGGTGAATGGG
AACTTGGGAAGCCTGTTGCTCCATCATTTGATGATCACCGTCCCATGGGA
CCCCCCAATGTAGGTCGTTTTGGTGGTCGAATGGAGCCTCCTCCTGGTCC
CGCTGCCAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCTT
CCCTGGCTGGAGCAATCATCGGTAAGGGTGGTGTGAACTCAAAACAGATC
TGTCGCCAAACTGGAGCCAAACTTTCAATTCGAGATCATGAGTCTGACCC
AAATCTTAGGAACATTGAACTTGAGGgaaattttgaacaaattaaGGATG
CAAGTAACATGGTGAAGGATTTACTGGTGACCCTGCAAATGTCTGCACCA
CCTAAATCAAACCAAGGTGCTCCTGGTGCCCCTGGCCATCATCATGGAAG
CAACTTCAAAACAAAACTGTGTGAGAATTTTACAAAAGGATCTTGCACTT
TTGGAGATAGATGTCATTTTGCACATGGAGCGGCTGAATTGCGAAAATGA
AAACTTTGCCTTGGTGATGTGGTGCATTATCCTATCAATCCAGgactatt
ttgattattattgttGTGCATTGCTACTTAGGGGTACTGACAGGACTTCT
CTGATGTTAAGagttttgttgattttgtttcctTTAGATAGCAACATTAG
CTTTCCAATTTCAGTTTTcccttttattattatgattatatgCTCTCCTC
ATATTGCCGGAACACTGATCATAGAGTCTTGTCCTTCTCA
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Coding sequence (CDS) from alignment at chr3:29972277..29975366+

>rna-XM_004493523.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004493523.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004493523.3; organism=Cicer arietinum; type=CDS; length=879bp; location=Sequence derived from: chr3:29972277..29975366+ (Cicer arietinum
ATGGATATGCGCAAGAGAGGAAGGTCTGAACACGGATTCAACAATGGAGG
ATTTAAGAAATCAAGACAAGAAATGGACTCCTTATCAACTGGTGTAGGAA
GCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGATGCCCATTT
GGCGAGAGCTGCCACTTCTTGCACTATGTTCCGGGCGGTTATAATGCTGT
TGCCCAGATGATGAATCTAGCACCTGCAGCGCCTCCTGCTCCTAGAAATG
TTGCCCCCCCACCACATGCTCCCAATGGGTCTGCACCATCTGCTGTTAAA
AGCCGTATATGCAACAAGTTTAATACTGCAGAAGGCTGCAAATTTGGCGA
CAAATGCCATTTTGCTCACGGTGAATGGGAACTTGGGAAGCCTGTTGCTC
CATCATTTGATGATCACCGTCCCATGGGACCCCCCAATGTAGGTCGTTTT
GGTGGTCGAATGGAGCCTCCTCCTGGTCCCGCTGCCAGCTTTGGTGCCAA
TGCCACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATCG
GTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCCAAA
CTTTCAATTCGAGATCATGAGTCTGACCCAAATCTTAGGAACATTGAACT
TGAGGgaaattttgaacaaattaaGGATGCAAGTAACATGGTGAAGGATT
TACTGGTGACCCTGCAAATGTCTGCACCACCTAAATCAAACCAAGGTGCT
CCTGGTGCCCCTGGCCATCATCATGGAAGCAACTTCAAAACAAAACTGTG
TGAGAATTTTACAAAAGGATCTTGCACTTTTGGAGATAGATGTCATTTTG
CACATGGAGCGGCTGAATTGCGAAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf
IPR000571Znf_CCCH
IPR045877ZFP36-like
IPR036855Znf_CCCH_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO:0003729mRNA binding