rna-XM_004494814.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:45503-46789 REVERSE LENGTH=293) HSP 1 Score: 232.646 bits (592), Expect = 8.660e-76 Identity = 113/207 (54.59%), Postives = 151/207 (72.95%), Query Frame = 0 Query: 59 AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMN-SKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264 A N D VVS + EPVK P ++YVCN+PRS+D QLL +F P GTV+SVEV RN ++GES+GS YVTM S N+AK AIA+LDG +VGGREMRV++S MN ++ E LNS P + + YE HKVYVGNL P+ +R+ F +FG + S RVL D K G++RV+AF+S+ S ERDA++S NGT++ GR ++VREG+EK+E+ Sbjct: 88 AEPNKDSVVS-KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 293
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:45503-46789 REVERSE LENGTH=294) HSP 1 Score: 228.409 bits (581), Expect = 4.458e-74 Identity = 113/208 (54.33%), Postives = 151/208 (72.60%), Query Frame = 0 Query: 59 AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVC-RNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMN-SKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264 A N D VVS + EPVK P ++YVCN+PRS+D QLL +F P GTV+SVEV RN ++GES+GS YVTM S N+AK AIA+LDG +VGGREMRV++S MN ++ E LNS P + + YE HKVYVGNL P+ +R+ F +FG + S RVL D K G++RV+AF+S+ S ERDA++S NGT++ GR ++VREG+EK+E+ Sbjct: 88 AEPNKDSVVS-KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 294
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:45610-46789 REVERSE LENGTH=286) HSP 1 Score: 210.69 bits (535), Expect = 3.123e-67 Identity = 104/189 (55.03%), Postives = 135/189 (71.43%), Query Frame = 0 Query: 59 AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMN-SKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGT 246 A N D VVS + EPVK P ++YVCN+PRS+D QLL +F P GTV+SVEV RN ++GES+GS YVTM S N+AK AIA+LDG +VGGREMRV++S MN ++ E LNS P + + YE HKVYVGNL P+ +R+ F +FG + S RVL D K G++RV+AF+S+ S ERDA++S NGT Sbjct: 88 AEPNKDSVVS-KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGT 275
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:22093678-22094540 REVERSE LENGTH=258) HSP 1 Score: 96.2857 bits (238), Expect = 1.713e-23 Identity = 67/193 (34.72%), Postives = 98/193 (50.78%), Query Frame = 0 Query: 64 DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVV 255 DD S+ +P N T++Y NLP + D+ L + VEV N ++G+S+G A+VTM + I LDG + GR ++V F+ K K P +Y E HK++VGNLS + T E + F G+V RV+ D G+SR Y FV Y S+ E + ++ SL+G E GR + V Sbjct: 70 DDGASAVLDPPAAVN-TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA----DKPK-------PNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: PSRP2 | plastid-specific ribosomal protein 2 | chr3:19342074-19343090 FORWARD LENGTH=253) HSP 1 Score: 96.2857 bits (238), Expect = 1.896e-23 Identity = 74/237 (31.22%), Postives = 122/237 (51.48%), Query Frame = 0 Query: 28 RFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPT-----QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREG 258 R FS P+P L+ + RSS+ T F V +EE+P L +P+ +VY+ N+PR+ EQL L HG V V+V + SG S+ + TM+S A + L+G V GRE++V + + + L L S + + + P+KVYVGNL+++ T E + +LF G V S +V + KS + FV++ S+ + +A++ +LN + G+ + V + Sbjct: 29 RVNVFSSKPFPSLAGTFS-RSSR----TRFIPYA----VTETEEKPAAL-DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: PSRP2 | plastid-specific ribosomal protein 2 | chr3:19342074-19343090 FORWARD LENGTH=253) HSP 1 Score: 96.2857 bits (238), Expect = 1.896e-23 Identity = 74/237 (31.22%), Postives = 122/237 (51.48%), Query Frame = 0 Query: 28 RFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPT-----QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREG 258 R FS P+P L+ + RSS+ T F V +EE+P L +P+ +VY+ N+PR+ EQL L HG V V+V + SG S+ + TM+S A + L+G V GRE++V + + + L L S + + + P+KVYVGNL+++ T E + +LF G V S +V + KS + FV++ S+ + +A++ +LN + G+ + V + Sbjct: 29 RVNVFSSKPFPSLAGTFS-RSSR----TRFIPYA----VTETEEKPAAL-DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: PDE322, CP33 | PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329) HSP 1 Score: 87.8113 bits (216), Expect = 5.716e-20 Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 0 Query: 77 GNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF-SFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLS-QTERDASMSLNGTEFCGRIL 253 G ++YV NLP + + +L +F GTV+ V++ + + S+G +VTM S AK A+ + +GGR ++V F + + + T R+ Y + PHKVY GNL + T + ++ FG V +V+ + G+SR + F+S+ S + + A ++NG E GR L Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRS-YVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: CP31B | chloroplast RNA-binding protein 31B | chr5:20452677-20453965 REVERSE LENGTH=289) HSP 1 Score: 85.5001 bits (210), Expect = 2.713e-19 Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 0 Query: 81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREGVEKT 262 +++V NLP D++ L LF GTV EV N ++ +S+G +VTM + A+ A+ + +V GR + V + S+ P + Y+ ++YVGNL + LF G V RV+ D + G+SR + FV ++ E + ++ +L+G GR + V E+T Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR---------PERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287 HSP 2 Score: 63.929 bits (154), Expect = 1.153e-11 Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0 Query: 70 EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVK 154 E +P ++YV NLP D+ +L LF+ HG V+ V + E+G S+G +V M + N AIAALDG ++ GR ++V Sbjct: 197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:15634980-15636331 REVERSE LENGTH=289) HSP 1 Score: 81.6481 bits (200), Expect = 7.010e-18 Identity = 70/251 (27.89%), Postives = 110/251 (43.82%), Query Frame = 0 Query: 40 LSFLVTARSSKPK--------VSTDFAAAVNG-DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTI-YYEGP----------------------HKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVVRE 257 +SF + A+ + P ++++F +G DV +E+ +++V NLP + D+ QL LF G V VEV + +G S+G +VTM S + + A +G ++ GR +RV PP R + GP ++VYVGNLS + LF G V RV+ D G+S+ + FV+Y S E ++A SL+G + GR + V E Sbjct: 44 VSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQ--SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-------------AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:14898341-14899590 FORWARD LENGTH=308) HSP 1 Score: 81.6481 bits (200), Expect = 9.044e-18 Identity = 65/199 (32.66%), Postives = 102/199 (51.26%), Query Frame = 0 Query: 63 GDDVVSSEEEPVKLGNPT---QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFG-NVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMS-LNGTEFCGRILVVR 256 D+ S EE+ + N +++V NLP S + LF GTV +VE+ R + G+++G A+VTM S A+ AI D V GR + V F+ + KK ++ N P+ + HK+YV NL+ A +R LF N S RV+ G+S Y FVS+ ++ E + +++ LNG E GR + ++ Sbjct: 75 ADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRF--KKPTPKSPNDLPS-PAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLK 269
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8VYM4|PSRP2_ARATH (Small ribosomal subunit protein cS22 OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.834e-22 Identity = 74/237 (31.22%), Postives = 122/237 (51.48%), Query Frame = 0 Query: 28 RFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPT-----QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREG 258 R FS P+P L+ + RSS+ T F V +EE+P L +P+ +VY+ N+PR+ EQL L HG V V+V + SG S+ + TM+S A + L+G V GRE++V + + + L L S + + + P+KVYVGNL+++ T E + +LF G V S +V + KS + FV++ S+ + +A++ +LN + G+ + V + Sbjct: 29 RVNVFSSKPFPSLAGTFS-RSSR----TRFIPYA----VTETEEKPAAL-DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P19684|ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.316e-22 Identity = 61/177 (34.46%), Postives = 94/177 (53.11%), Query Frame = 0 Query: 81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYY---EGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRIL 253 ++YV NLP S + QL +F GTV +VE+ + + S+G A+VTM S AK AI DG VGGR ++V F + G + S R+ Y + PHK+YV NLS + T + +R F S +V+ D G+SR + F+++ S ++++ ++N E GR L Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFP---EVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P28644|ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.802e-20 Identity = 58/176 (32.95%), Postives = 88/176 (50.00%), Query Frame = 0 Query: 81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVV 255 +++V NLP D+E+L +F G V EV N E+ S+G +VTM + A+ A+ L+G D+ GR++ V + S ++ P R VYVGNL + LF G V S RV+ D + G+SR + FV+ S++E DA +L+G GR + V Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR---------VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P82277|RRP2_SPIOL (Small ribosomal subunit protein cS22 OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.508e-19 Identity = 50/176 (28.41%), Postives = 96/176 (54.55%), Query Frame = 0 Query: 81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVV 255 ++YV N+PR+ + ++L + HG + EV + SG S+ +VTM++ A I L+ ++GGR+++V + +G++ + + + E P+KVY+GNL+++ T E ++ F G V +V + KS + FVS+ S+ E +A++ +LN + G+ + V Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNIT---EKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P19683|ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.288e-19 Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 0 Query: 81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVV 255 +++V NLP D+E L LF G V EV N ++ +S+G +VTM + A+ A+ + DV GR + V N + E PP RT +E +++YVGN+ + LF G V S RV+ D + G+SR + FV+ S+ E DA +L+G GR + V Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPP-RT--FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303 HSP 2 Score: 62.3882 bits (150), Expect = 4.741e-10 Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 0 Query: 70 EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRV 153 E P ++YV N+P D +L LF+ HG V+S V + E+G S+G +VTM S AIA LDG + GR +RV Sbjct: 220 ERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q39061|CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.574e-19 Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 0 Query: 77 GNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF-SFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLS-QTERDASMSLNGTEFCGRIL 253 G ++YV NLP + + +L +F GTV+ V++ + + S+G +VTM S AK A+ + +GGR ++V F + + + T R+ Y + PHKVY GNL + T + ++ FG V +V+ + G+SR + F+S+ S + + A ++NG E GR L Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRS-YVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P49314|ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.443e-18 Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 0 Query: 64 DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF----------SFQM----NSKKKGLETLNSP-----PARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVVREGVEK 261 +D V E+P + +++V NLP S D+ L LF G V VEV + SG S+G +VTM + + A +G ++ GR +RV SF NS G NS R++ + ++VYVGNLS ++ LF GNV +V+ D G+SR + FV+Y S E DA SLNG + GR + V E+ Sbjct: 73 EDDVEVAEQP-RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV--DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FGS0|CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.639e-18 Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 0 Query: 81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREGVEKT 262 +++V NLP D++ L LF GTV EV N ++ +S+G +VTM + A+ A+ + +V GR + V + S+ P + Y+ ++YVGNL + LF G V RV+ D + G+SR + FV ++ E + ++ +L+G GR + V E+T Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR---------PERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287 HSP 2 Score: 63.929 bits (154), Expect = 1.129e-10 Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0 Query: 70 EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVK 154 E +P ++YV NLP D+ +L LF+ HG V+ V + E+G S+G +V M + N AIAALDG ++ GR ++V Sbjct: 197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q08937|ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.824e-18 Identity = 70/218 (32.11%), Postives = 102/218 (46.79%), Query Frame = 0 Query: 64 DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF----------SFQM----NSKKKGLETLNSP-----PARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVVREGVEK 261 +D V E+P + +++V NLP S D+ L LF G V VEV + +G S+G +VTM + + A +G ++ GR +RV SF NS G NS R++ + ++VYVGNLS ++ LF GNV +V+ D G+SR + FV+Y S E DA SLNG + GR + V E+ Sbjct: 72 EDDVEVAEQP-RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV--DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q08935|ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.915e-17 Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 0 Query: 62 NGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNS----KKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVV 255 +GDD V EE +++V NLP S D+ L LF G V VEV + +G S+G +VTM S + A +G ++ GR +RV NS +K+ + ++ ++VYVGNL+ + + LF G V +V+ D G+SR + FV+Y S E +A SL+G + GR + V Sbjct: 72 DGDDGV---EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV------NSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XWT8|A0A1S2XWT8_CICAR (30S ribosomal protein 2, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101498483 PE=4 SV=1) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET Sbjct: 1 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D5AYW5|A0A9D5AYW5_PEA (RRM domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_030064 PE=4 SV=1) HSP 1 Score: 369.007 bits (946), Expect = 3.235e-126 Identity = 198/271 (73.06%), Postives = 219/271 (80.81%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFA--AAVNGDDVV-----SSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNS-PPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 MA N TT+ LS ATT SSS L+G +KRFV FS +PYP LS V SSKP+VST FA A VNGD + + EE+P KLGNPTQ+YVCNLPRS D QL H+FTPHGTVLS +VC+N E+GESKGSAYVTM SYN AK AI ALDGLDV GRE+RVKFS QMN+KKK LETL+S P RTIYYEGP+KVYVGNL+RS TPEDVRHLFG+FGNVASVRVLQDLK G +RVYAFVSYLSQTERDASMSLNGTEF R LVVR GVE+TE Sbjct: 1 MATNATTLSLSFATTSSSSSLVGI-SKRFVSFSTLPYPSLSHPVVTHSSKPRVSTPFALAAVVNGDTAIVDGEENEEEKPRKLGNPTQLYVCNLPRSCDIRQLTHIFTPHGTVLSAQVCQNAETGESKGSAYVTMGSYNAAKNAIDALDGLDVDGREVRVKFSVQMNTKKKNLETLSSLTPVRTIYYEGPYKVYVGNLARSTTPEDVRHLFGKFGNVASVRVLQDLKQGNNRVYAFVSYLSQTERDASMSLNGTEFGSRTLVVRAGVERTE 270
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PCI0|A0A2K3PCI0_TRIPR (33 kDa ribonucleoprotein chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g009654 PE=4 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 8.894e-110 Identity = 181/278 (65.11%), Postives = 212/278 (76.26%), Query Frame = 0 Query: 1 MAANCTT---IPLSLATTCSSSLLLGTKA-----KRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNG---DDVVS---SEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264 MAAN TT + LS A T SSSLL + KR FS +PYP S R+S P+ A +NG + VVS +++P+KL N T++YVCNLPR++DT+QLL +FTPHGTVLS +VCRN E+GESKGSAYV M SYN AK A A LDGLDV GREMRVKFS QMN KK +ETLN+ P RTI+YEGPHK YVGNL++SATPED+R+LFG+FGNVASVRVLQD+K GKSR YAFVSYLSQ+ERDA+MSLNGTEFCGRILVVREGVE+T T Sbjct: 1 MAANVTTTATLSLSFAATTSSSLLASSSNSNSSSKRLFSFSALPYPSFSL----RTSNPR------AVLNGQTPNGVVSDPEQQQQPLKLRNTTELYVCNLPRTYDTQQLLDIFTPHGTVLSAQVCRNAETGESKGSAYVKMGSYNAAKNAAANLDGLDVEGREMRVKFSLQMNIKKNFVETLNATPLRTIFYEGPHKAYVGNLAKSATPEDLRYLFGKFGNVASVRVLQDMKQGKSRTYAFVSYLSQSERDAAMSLNGTEFCGRILVVREGVEQTRT 268
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8KYR6|A0A8B8KYR6_ABRPR (33 kDa ribonucleoprotein, chloroplastic-like OS=Abrus precatorius OX=3816 GN=LOC113860733 PE=4 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 3.511e-104 Identity = 172/270 (63.70%), Postives = 198/270 (73.33%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLL------LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFA-AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 MAAN T LSLA T S L G +RFV S L L+ RSSK +V T A AV+G + V EEE K+ T+VYVCNLPRS DTEQLLH+F PHGTVLS EVCRN SGES+GSAYVTM S N+AK AI ALD DVGGREMRV+FS +MN + + LET+NS P R IYYEGPHK+YVGNLSR+A PED+R LFGRFGNVASVR+LQDL+ GK RVYAF+SYLS+ ERDA+MSLNGTEFCGR LV+REGV + + Sbjct: 1 MAANAT---LSLALTPFSLLKDNPKPPFGGAPRRFVCCSAGFSSSLC-LLPGRSSKARVFTASAETAVDGGEHVE-EEELWKMPRATEVYVCNLPRSCDTEQLLHMFKPHGTVLSAEVCRNEGSGESRGSAYVTMGSTNSAKNAIDALDRTDVGGREMRVRFSAEMNPRGRNLETMNSSPKRVIYYEGPHKLYVGNLSRAARPEDLRQLFGRFGNVASVRLLQDLRHGKRRVYAFISYLSEGERDAAMSLNGTEFCGRTLVIREGVGRED 265
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A371FXB2|A0A371FXB2_MUCPR (RRM domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_36235 PE=4 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 5.192e-102 Identity = 169/275 (61.45%), Postives = 198/275 (72.00%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSF---LVTARSSKPKVSTDFAAAVNGDDVVSS----EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 MAAN T+PL+ SSSLL G KR V S P+ F S LV SSK + T AA + + VV EEE K T+VYVCNLPRS DT+QLL +F PHGTVLS EVCR+ E+GES+GS YVTM S N AK AIAALDG DVGGREMRV+FS +MN +++ L T+NS P R I+YEGPHK+YVGNLSR+A PED+R LFGRFGNVASVRVLQDL+ GK RVYAFVSYLS+ ERDA+ SL+GTEFCGR LV+REGVE+ + Sbjct: 106 MAAN-VTLPLAFT---SSSLLKHKSQFGAAPKRIVSCSAGPFSFSSSSLCLVAGCSSKARAFTASAATADEETVVVGGEHVEEETWKQQRATEVYVCNLPRSCDTQQLLCMFNPHGTVLSAEVCRSAETGESRGSGYVTMASINLAKNAIAALDGSDVGGREMRVRFSAEMNPRRRNLGTMNSAPKRVIFYEGPHKLYVGNLSRAARPEDLRQLFGRFGNVASVRVLQDLRQGKHRVYAFVSYLSERERDAAKSLHGTEFCGRTLVIREGVERED 376
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A151TY51|A0A151TY51_CAJCA (RRM domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_011284 PE=4 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 2.511e-101 Identity = 162/257 (63.04%), Postives = 192/257 (74.71%), Query Frame = 0 Query: 10 LSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSF---LVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 LSLA T SSSLL + +F + P PFLS V +SK + T AA V+ + V K PT+VYVCNLPRS DTEQLLH+F PHGTVLS E+CR+ E+GES+GSAYVTM S N+AK AIAALDG DVGGREMRV+FS +MN ++ L+T+NS P R IYYEGPHK+YVGNLS++A PED+R LFGRFGNVASVRVL DL+ GK R YAFVSYLS+ ERD +MSLNGTEFCGR LV+REGVE+ + Sbjct: 4 LSLAFT-SSSLL--NQNPQF----RPPKPFLSSCLSFVAGCTSKARAFTALAAPVDEETVEEET---WKQPRPTEVYVCNLPRSCDTEQLLHIFNPHGTVLSAEICRSEETGESRGSAYVTMASINSAKNAIAALDGSDVGGREMRVRFSAEMNPNRRNLDTMNSSPKRVIYYEGPHKLYVGNLSKAARPEDLRQLFGRFGNVASVRVLHDLRQGKRRFYAFVSYLSERERDTAMSLNGTEFCGRTLVIREGVERED 250
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|K7N0E4|K7N0E4_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100803098 PE=4 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 3.559e-99 Identity = 163/268 (60.82%), Postives = 194/268 (72.39%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 +AAN T SLA SSSLL G KRFV S L SSK + + A+A D + EE KL PT+VYVCNLPRS DTEQLLH+F PHGTVLS +VCR+ E+GES+GSAYVTM S N+A+ AIAALD D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ + Sbjct: 3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSL----CLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 262
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PV29|A0A0B2PV29_GLYSO (28 kDa ribonucleoprotein, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_052625 PE=4 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 3.559e-99 Identity = 163/268 (60.82%), Postives = 194/268 (72.39%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 +AAN T SLA SSSLL G KRFV S L SSK + + A+A D + EE KL PT+VYVCNLPRS DTEQLLH+F PHGTVLS +VCR+ E+GES+GSAYVTM S N+A+ AIAALD D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ + Sbjct: 3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSL----CLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 262
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445FLS8|A0A445FLS8_GLYSO (RNA-binding protein CP33, chloroplastic isoform A OS=Glycine soja OX=3848 GN=D0Y65_052625 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 3.936e-93 Identity = 163/294 (55.44%), Postives = 194/294 (65.99%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEV--------------------------CRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 +AAN T SLA SSSLL G KRFV S L SSK + + A+A D + EE KL PT+VYVCNLPRS DTEQLLH+F PHGTVLS +V CR+ E+GES+GSAYVTM S N+A+ AIAALD D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ + Sbjct: 3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSLC----LAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLVISLFQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 288
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|I1NCR2|I1NCR2_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100803098 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 3.936e-93 Identity = 163/294 (55.44%), Postives = 194/294 (65.99%), Query Frame = 0 Query: 1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEV--------------------------CRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263 +AAN T SLA SSSLL G KRFV S L SSK + + A+A D + EE KL PT+VYVCNLPRS DTEQLLH+F PHGTVLS +V CR+ E+GES+GSAYVTM S N+A+ AIAALD D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ + Sbjct: 3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSLC----LAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLVISLFQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 288 The following BLAST results are available for this feature:
BLAST of rna-XM_004494814.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 10
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 10
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3; organism=Cicer arietinum; type=mRNA; length=795bpback to top protein sequence of rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 >rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=264bpback to top mRNA from alignment at chr3:39731291..39733014+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3; organism=Cicer arietinum; type=mRNA; length=1724bp; location=Sequence derived from: chr3:39731291..39733014+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr3:39731291..39733014+ >rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3; organism=Cicer arietinum; type=CDS; length=795bp; location=Sequence derived from: chr3:39731291..39733014+ (Cicer arietinumback to top |