rna-XM_004494814.3

Transcript Overview
Namerna-XM_004494814.3
Unique Namerna-XM_004494814.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length795
Product30S ribosomal protein 2, chloroplastic
References
External references for this mRNA
DatabaseAccession
GeneID101498483
GenBankXM_004494814.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:39731291..39733014 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL081Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0144Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascanL281Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL180Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0393Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL297Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0752Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanR120Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0259Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1076Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
canccR0317Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR231Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR286Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cantifR159Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR161Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR192Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cantifR175Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR205Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR183Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR192Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR260Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR196Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR217Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR235Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR140Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR150Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR150Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR166Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR209Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR195Pisum sativum Cameor genome v1aPisum sativum
canpsR227Pisum sativum Cameor genome v1aPisum sativum
avjcanL156Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL472Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL473Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR133Cicer arietinum
cancarR180Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan11g024000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun09g005000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr09.966Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.5g151280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
jg8079.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.5g196880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.010G119500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_21571Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun10g152000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_07642.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_014643654.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat03G0006400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-KK1_011284Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_29250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va11G007260.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.009G258000.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va04G000620.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_01357Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_07094.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101498483gene-LOC101498483_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004494814.3-1exon-XM_004494814.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004494814.3-2exon-XM_004494814.3-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004494814.3-3exon-XM_004494814.3-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004494814.3-4exon-XM_004494814.3-4_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004494871.1cds-XP_004494871.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS
cds-XP_004494871.1cds-XP_004494871.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004494871.1cds-XP_004494871.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_004494871.1cds-XP_004494871.1_CaCDCfrontier-NCBI_v1_4Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004494814.3_CaCDCfrontier-NCBI_v1rna-XM_004494814.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004494814.3_CaCDCfrontier-NCBI_v1rna-XM_004494814.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:45503-46789 REVERSE LENGTH=293)

HSP 1 Score: 232.646 bits (592), Expect = 8.660e-76
Identity = 113/207 (54.59%), Postives = 151/207 (72.95%), Query Frame = 0
Query:   59 AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMN-SKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264
            A  N D VVS + EPVK   P ++YVCN+PRS+D  QLL +F P GTV+SVEV RN ++GES+GS YVTM S N+AK AIA+LDG +VGGREMRV++S  MN   ++  E LNS P + + YE  HKVYVGNL     P+ +R+ F +FG + S RVL D K G++RV+AF+S+ S  ERDA++S NGT++ GR ++VREG+EK+E+
Sbjct:   88 AEPNKDSVVS-KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 293          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:45503-46789 REVERSE LENGTH=294)

HSP 1 Score: 228.409 bits (581), Expect = 4.458e-74
Identity = 113/208 (54.33%), Postives = 151/208 (72.60%), Query Frame = 0
Query:   59 AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVC-RNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMN-SKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264
            A  N D VVS + EPVK   P ++YVCN+PRS+D  QLL +F P GTV+SVEV  RN ++GES+GS YVTM S N+AK AIA+LDG +VGGREMRV++S  MN   ++  E LNS P + + YE  HKVYVGNL     P+ +R+ F +FG + S RVL D K G++RV+AF+S+ S  ERDA++S NGT++ GR ++VREG+EK+E+
Sbjct:   88 AEPNKDSVVS-KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 294          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:45610-46789 REVERSE LENGTH=286)

HSP 1 Score: 210.69 bits (535), Expect = 3.123e-67
Identity = 104/189 (55.03%), Postives = 135/189 (71.43%), Query Frame = 0
Query:   59 AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMN-SKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGT 246
            A  N D VVS + EPVK   P ++YVCN+PRS+D  QLL +F P GTV+SVEV RN ++GES+GS YVTM S N+AK AIA+LDG +VGGREMRV++S  MN   ++  E LNS P + + YE  HKVYVGNL     P+ +R+ F +FG + S RVL D K G++RV+AF+S+ S  ERDA++S NGT
Sbjct:   88 AEPNKDSVVS-KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGT 275          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:22093678-22094540 REVERSE LENGTH=258)

HSP 1 Score: 96.2857 bits (238), Expect = 1.713e-23
Identity = 67/193 (34.72%), Postives = 98/193 (50.78%), Query Frame = 0
Query:   64 DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVV 255
            DD  S+  +P    N T++Y  NLP + D+  L  +         VEV  N ++G+S+G A+VTM +       I  LDG +  GR ++V F+     K K       P    +Y E  HK++VGNLS + T E +   F   G+V   RV+ D   G+SR Y FV Y S+ E + ++ SL+G E  GR + V
Sbjct:   70 DDGASAVLDPPAAVN-TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA----DKPK-------PNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: PSRP2 | plastid-specific ribosomal protein 2 | chr3:19342074-19343090 FORWARD LENGTH=253)

HSP 1 Score: 96.2857 bits (238), Expect = 1.896e-23
Identity = 74/237 (31.22%), Postives = 122/237 (51.48%), Query Frame = 0
Query:   28 RFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPT-----QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREG 258
            R   FS  P+P L+   + RSS+    T F        V  +EE+P  L +P+     +VY+ N+PR+   EQL  L   HG V  V+V  +  SG S+   + TM+S   A   +  L+G  V GRE++V  + +  +    L  L S    + + + P+KVYVGNL+++ T E + +LF   G V S +V +     KS  + FV++ S+ + +A++ +LN +   G+ + V + 
Sbjct:   29 RVNVFSSKPFPSLAGTFS-RSSR----TRFIPYA----VTETEEKPAAL-DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: PSRP2 | plastid-specific ribosomal protein 2 | chr3:19342074-19343090 FORWARD LENGTH=253)

HSP 1 Score: 96.2857 bits (238), Expect = 1.896e-23
Identity = 74/237 (31.22%), Postives = 122/237 (51.48%), Query Frame = 0
Query:   28 RFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPT-----QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREG 258
            R   FS  P+P L+   + RSS+    T F        V  +EE+P  L +P+     +VY+ N+PR+   EQL  L   HG V  V+V  +  SG S+   + TM+S   A   +  L+G  V GRE++V  + +  +    L  L S    + + + P+KVYVGNL+++ T E + +LF   G V S +V +     KS  + FV++ S+ + +A++ +LN +   G+ + V + 
Sbjct:   29 RVNVFSSKPFPSLAGTFS-RSSR----TRFIPYA----VTETEEKPAAL-DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: PDE322, CP33 | PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329)

HSP 1 Score: 87.8113 bits (216), Expect = 5.716e-20
Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 0
Query:   77 GNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF-SFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLS-QTERDASMSLNGTEFCGRIL 253
            G   ++YV NLP +  + +L  +F   GTV+ V++  +  +  S+G  +VTM S   AK A+   +   +GGR ++V F       + + + T      R+ Y + PHKVY GNL  + T + ++  FG    V   +V+ +   G+SR + F+S+ S +  + A  ++NG E  GR L
Sbjct:  113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRS-YVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: CP31B | chloroplast RNA-binding protein 31B | chr5:20452677-20453965 REVERSE LENGTH=289)

HSP 1 Score: 85.5001 bits (210), Expect = 2.713e-19
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 0
Query:   81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREGVEKT 262
            +++V NLP   D++ L  LF   GTV   EV  N ++ +S+G  +VTM +   A+ A+   +  +V GR + V  +    S+         P  +   Y+   ++YVGNL        +  LF   G V   RV+ D + G+SR + FV   ++ E + ++ +L+G    GR + V    E+T
Sbjct:  114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR---------PERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287          

HSP 2 Score: 63.929 bits (154), Expect = 1.153e-11
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   70 EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVK 154
            E +P       ++YV NLP   D+ +L  LF+ HG V+   V  + E+G S+G  +V M + N    AIAALDG ++ GR ++V 
Sbjct:  197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:15634980-15636331 REVERSE LENGTH=289)

HSP 1 Score: 81.6481 bits (200), Expect = 7.010e-18
Identity = 70/251 (27.89%), Postives = 110/251 (43.82%), Query Frame = 0
Query:   40 LSFLVTARSSKPK--------VSTDFAAAVNG-DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTI-YYEGP----------------------HKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVVRE 257
            +SF + A+ + P         ++++F    +G  DV   +E+        +++V NLP + D+ QL  LF   G V  VEV  +  +G S+G  +VTM S +  + A    +G ++ GR +RV                  PP R   +  GP                      ++VYVGNLS       +  LF   G V   RV+ D   G+S+ + FV+Y S  E ++A  SL+G +  GR + V E
Sbjct:   44 VSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQ--SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-------------AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279          
BLAST of rna-XM_004494814.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:14898341-14899590 FORWARD LENGTH=308)

HSP 1 Score: 81.6481 bits (200), Expect = 9.044e-18
Identity = 65/199 (32.66%), Postives = 102/199 (51.26%), Query Frame = 0
Query:   63 GDDVVSSEEEPVKLGNPT---QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFG-NVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMS-LNGTEFCGRILVVR 256
             D+  S EE+  +  N     +++V NLP S     +  LF   GTV +VE+ R  + G+++G A+VTM S   A+ AI   D   V GR + V F+ +   KK   ++ N  P+     +  HK+YV NL+  A    +R LF     N  S RV+     G+S  Y FVS+ ++ E + +++ LNG E  GR + ++
Sbjct:   75 ADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRF--KKPTPKSPNDLPS-PAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLK 269          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8VYM4|PSRP2_ARATH (Small ribosomal subunit protein cS22 OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.834e-22
Identity = 74/237 (31.22%), Postives = 122/237 (51.48%), Query Frame = 0
Query:   28 RFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPT-----QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREG 258
            R   FS  P+P L+   + RSS+    T F        V  +EE+P  L +P+     +VY+ N+PR+   EQL  L   HG V  V+V  +  SG S+   + TM+S   A   +  L+G  V GRE++V  + +  +    L  L S    + + + P+KVYVGNL+++ T E + +LF   G V S +V +     KS  + FV++ S+ + +A++ +LN +   G+ + V + 
Sbjct:   29 RVNVFSSKPFPSLAGTFS-RSSR----TRFIPYA----VTETEEKPAAL-DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P19684|ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.316e-22
Identity = 61/177 (34.46%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYY---EGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRIL 253
            ++YV NLP S  + QL  +F   GTV +VE+  +  +  S+G A+VTM S   AK AI   DG  VGGR ++V F       + G   + S   R+ Y    + PHK+YV NLS + T + +R  F       S +V+ D   G+SR + F+++ S    ++++ ++N  E  GR L
Sbjct:  115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFP---EVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P28644|ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.802e-20
Identity = 58/176 (32.95%), Postives = 88/176 (50.00%), Query Frame = 0
Query:   81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVV 255
            +++V NLP   D+E+L  +F   G V   EV  N E+  S+G  +VTM +   A+ A+  L+G D+ GR++ V  +    S ++       P  R         VYVGNL        +  LF   G V S RV+ D + G+SR + FV+  S++E  DA  +L+G    GR + V
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR---------VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P82277|RRP2_SPIOL (Small ribosomal subunit protein cS22 OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.508e-19
Identity = 50/176 (28.41%), Postives = 96/176 (54.55%), Query Frame = 0
Query:   81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVV 255
            ++YV N+PR+ + ++L  +   HG +   EV  +  SG S+   +VTM++   A   I  L+  ++GGR+++V  +       +G++   +    + + E P+KVY+GNL+++ T E ++  F   G V   +V +     KS  + FVS+ S+ E +A++ +LN +   G+ + V
Sbjct:   85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNIT---EKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P19683|ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.288e-19
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 0
Query:   81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVV 255
            +++V NLP   D+E L  LF   G V   EV  N ++ +S+G  +VTM +   A+ A+   +  DV GR + V      N   +  E    PP RT  +E  +++YVGN+        +  LF   G V S RV+ D + G+SR + FV+  S+ E  DA  +L+G    GR + V
Sbjct:  137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPP-RT--FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303          

HSP 2 Score: 62.3882 bits (150), Expect = 4.741e-10
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 0
Query:   70 EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRV 153
            E  P       ++YV N+P   D  +L  LF+ HG V+S  V  + E+G S+G  +VTM S      AIA LDG  + GR +RV
Sbjct:  220 ERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q39061|CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.574e-19
Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 0
Query:   77 GNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF-SFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLS-QTERDASMSLNGTEFCGRIL 253
            G   ++YV NLP +  + +L  +F   GTV+ V++  +  +  S+G  +VTM S   AK A+   +   +GGR ++V F       + + + T      R+ Y + PHKVY GNL  + T + ++  FG    V   +V+ +   G+SR + F+S+ S +  + A  ++NG E  GR L
Sbjct:  113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRS-YVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|P49314|ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.443e-18
Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 0
Query:   64 DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF----------SFQM----NSKKKGLETLNSP-----PARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVVREGVEK 261
            +D V   E+P +     +++V NLP S D+  L  LF   G V  VEV  +  SG S+G  +VTM +    + A    +G ++ GR +RV            SF      NS   G    NS        R++  +  ++VYVGNLS       ++ LF   GNV   +V+ D   G+SR + FV+Y S  E  DA  SLNG +  GR + V    E+
Sbjct:   73 EDDVEVAEQP-RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV--DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FGS0|CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.639e-18
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 0
Query:   81 QVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASM-SLNGTEFCGRILVVREGVEKT 262
            +++V NLP   D++ L  LF   GTV   EV  N ++ +S+G  +VTM +   A+ A+   +  +V GR + V  +    S+         P  +   Y+   ++YVGNL        +  LF   G V   RV+ D + G+SR + FV   ++ E + ++ +L+G    GR + V    E+T
Sbjct:  114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR---------PERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287          

HSP 2 Score: 63.929 bits (154), Expect = 1.129e-10
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   70 EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVK 154
            E +P       ++YV NLP   D+ +L  LF+ HG V+   V  + E+G S+G  +V M + N    AIAALDG ++ GR ++V 
Sbjct:  197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q08937|ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.824e-18
Identity = 70/218 (32.11%), Postives = 102/218 (46.79%), Query Frame = 0
Query:   64 DDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKF----------SFQM----NSKKKGLETLNSP-----PARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVVREGVEK 261
            +D V   E+P +     +++V NLP S D+  L  LF   G V  VEV  +  +G S+G  +VTM +    + A    +G ++ GR +RV            SF      NS   G    NS        R++  +  ++VYVGNLS       ++ LF   GNV   +V+ D   G+SR + FV+Y S  E  DA  SLNG +  GR + V    E+
Sbjct:   72 EDDVEVAEQP-RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV--DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q08935|ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.915e-17
Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 0
Query:   62 NGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNS----KKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTE-RDASMSLNGTEFCGRILVV 255
            +GDD V   EE        +++V NLP S D+  L  LF   G V  VEV  +  +G S+G  +VTM S    + A    +G ++ GR +RV      NS    +K+   +          ++  ++VYVGNL+     + +  LF   G V   +V+ D   G+SR + FV+Y S  E  +A  SL+G +  GR + V
Sbjct:   72 DGDDGV---EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV------NSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XWT8|A0A1S2XWT8_CICAR (30S ribosomal protein 2, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101498483 PE=4 SV=1)

HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264
            MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET
Sbjct:    1 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D5AYW5|A0A9D5AYW5_PEA (RRM domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_030064 PE=4 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 3.235e-126
Identity = 198/271 (73.06%), Postives = 219/271 (80.81%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFA--AAVNGDDVV-----SSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNS-PPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            MA N TT+ LS ATT SSS L+G  +KRFV FS +PYP LS  V   SSKP+VST FA  A VNGD  +     + EE+P KLGNPTQ+YVCNLPRS D  QL H+FTPHGTVLS +VC+N E+GESKGSAYVTM SYN AK AI ALDGLDV GRE+RVKFS QMN+KKK LETL+S  P RTIYYEGP+KVYVGNL+RS TPEDVRHLFG+FGNVASVRVLQDLK G +RVYAFVSYLSQTERDASMSLNGTEF  R LVVR GVE+TE
Sbjct:    1 MATNATTLSLSFATTSSSSSLVGI-SKRFVSFSTLPYPSLSHPVVTHSSKPRVSTPFALAAVVNGDTAIVDGEENEEEKPRKLGNPTQLYVCNLPRSCDIRQLTHIFTPHGTVLSAQVCQNAETGESKGSAYVTMGSYNAAKNAIDALDGLDVDGREVRVKFSVQMNTKKKNLETLSSLTPVRTIYYEGPYKVYVGNLARSTTPEDVRHLFGKFGNVASVRVLQDLKQGNNRVYAFVSYLSQTERDASMSLNGTEFGSRTLVVRAGVERTE 270          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PCI0|A0A2K3PCI0_TRIPR (33 kDa ribonucleoprotein chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g009654 PE=4 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 8.894e-110
Identity = 181/278 (65.11%), Postives = 212/278 (76.26%), Query Frame = 0
Query:    1 MAANCTT---IPLSLATTCSSSLLLGTKA-----KRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNG---DDVVS---SEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264
            MAAN TT   + LS A T SSSLL  +       KR   FS +PYP  S     R+S P+      A +NG   + VVS    +++P+KL N T++YVCNLPR++DT+QLL +FTPHGTVLS +VCRN E+GESKGSAYV M SYN AK A A LDGLDV GREMRVKFS QMN KK  +ETLN+ P RTI+YEGPHK YVGNL++SATPED+R+LFG+FGNVASVRVLQD+K GKSR YAFVSYLSQ+ERDA+MSLNGTEFCGRILVVREGVE+T T
Sbjct:    1 MAANVTTTATLSLSFAATTSSSLLASSSNSNSSSKRLFSFSALPYPSFSL----RTSNPR------AVLNGQTPNGVVSDPEQQQQPLKLRNTTELYVCNLPRTYDTQQLLDIFTPHGTVLSAQVCRNAETGESKGSAYVKMGSYNAAKNAAANLDGLDVEGREMRVKFSLQMNIKKNFVETLNATPLRTIFYEGPHKAYVGNLAKSATPEDLRYLFGKFGNVASVRVLQDMKQGKSRTYAFVSYLSQSERDAAMSLNGTEFCGRILVVREGVEQTRT 268          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8KYR6|A0A8B8KYR6_ABRPR (33 kDa ribonucleoprotein, chloroplastic-like OS=Abrus precatorius OX=3816 GN=LOC113860733 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 3.511e-104
Identity = 172/270 (63.70%), Postives = 198/270 (73.33%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLL------LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFA-AAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            MAAN T   LSLA T  S L        G   +RFV  S      L  L+  RSSK +V T  A  AV+G + V  EEE  K+   T+VYVCNLPRS DTEQLLH+F PHGTVLS EVCRN  SGES+GSAYVTM S N+AK AI ALD  DVGGREMRV+FS +MN + + LET+NS P R IYYEGPHK+YVGNLSR+A PED+R LFGRFGNVASVR+LQDL+ GK RVYAF+SYLS+ ERDA+MSLNGTEFCGR LV+REGV + +
Sbjct:    1 MAANAT---LSLALTPFSLLKDNPKPPFGGAPRRFVCCSAGFSSSLC-LLPGRSSKARVFTASAETAVDGGEHVE-EEELWKMPRATEVYVCNLPRSCDTEQLLHMFKPHGTVLSAEVCRNEGSGESRGSAYVTMGSTNSAKNAIDALDRTDVGGREMRVRFSAEMNPRGRNLETMNSSPKRVIYYEGPHKLYVGNLSRAARPEDLRQLFGRFGNVASVRLLQDLRHGKRRVYAFISYLSEGERDAAMSLNGTEFCGRTLVIREGVGRED 265          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A371FXB2|A0A371FXB2_MUCPR (RRM domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_36235 PE=4 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 5.192e-102
Identity = 169/275 (61.45%), Postives = 198/275 (72.00%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSF---LVTARSSKPKVSTDFAAAVNGDDVVSS----EEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            MAAN  T+PL+     SSSLL      G   KR V  S  P+ F S    LV   SSK +  T  AA  + + VV      EEE  K    T+VYVCNLPRS DT+QLL +F PHGTVLS EVCR+ E+GES+GS YVTM S N AK AIAALDG DVGGREMRV+FS +MN +++ L T+NS P R I+YEGPHK+YVGNLSR+A PED+R LFGRFGNVASVRVLQDL+ GK RVYAFVSYLS+ ERDA+ SL+GTEFCGR LV+REGVE+ +
Sbjct:  106 MAAN-VTLPLAFT---SSSLLKHKSQFGAAPKRIVSCSAGPFSFSSSSLCLVAGCSSKARAFTASAATADEETVVVGGEHVEEETWKQQRATEVYVCNLPRSCDTQQLLCMFNPHGTVLSAEVCRSAETGESRGSGYVTMASINLAKNAIAALDGSDVGGREMRVRFSAEMNPRRRNLGTMNSAPKRVIFYEGPHKLYVGNLSRAARPEDLRQLFGRFGNVASVRVLQDLRQGKHRVYAFVSYLSERERDAAKSLHGTEFCGRTLVIREGVERED 376          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A151TY51|A0A151TY51_CAJCA (RRM domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_011284 PE=4 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.511e-101
Identity = 162/257 (63.04%), Postives = 192/257 (74.71%), Query Frame = 0
Query:   10 LSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSF---LVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            LSLA T SSSLL   +  +F    + P PFLS     V   +SK +  T  AA V+ + V        K   PT+VYVCNLPRS DTEQLLH+F PHGTVLS E+CR+ E+GES+GSAYVTM S N+AK AIAALDG DVGGREMRV+FS +MN  ++ L+T+NS P R IYYEGPHK+YVGNLS++A PED+R LFGRFGNVASVRVL DL+ GK R YAFVSYLS+ ERD +MSLNGTEFCGR LV+REGVE+ +
Sbjct:    4 LSLAFT-SSSLL--NQNPQF----RPPKPFLSSCLSFVAGCTSKARAFTALAAPVDEETVEEET---WKQPRPTEVYVCNLPRSCDTEQLLHIFNPHGTVLSAEICRSEETGESRGSAYVTMASINSAKNAIAALDGSDVGGREMRVRFSAEMNPNRRNLDTMNSSPKRVIYYEGPHKLYVGNLSKAARPEDLRQLFGRFGNVASVRVLHDLRQGKRRFYAFVSYLSERERDTAMSLNGTEFCGRTLVIREGVERED 250          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|K7N0E4|K7N0E4_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100803098 PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.559e-99
Identity = 163/268 (60.82%), Postives = 194/268 (72.39%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            +AAN T    SLA   SSSLL      G   KRFV  S         L    SSK +  +  A+A   D    + EE  KL  PT+VYVCNLPRS DTEQLLH+F PHGTVLS +VCR+ E+GES+GSAYVTM S N+A+ AIAALD  D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G  RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ +
Sbjct:    3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSL----CLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 262          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PV29|A0A0B2PV29_GLYSO (28 kDa ribonucleoprotein, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_052625 PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.559e-99
Identity = 163/268 (60.82%), Postives = 194/268 (72.39%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            +AAN T    SLA   SSSLL      G   KRFV  S         L    SSK +  +  A+A   D    + EE  KL  PT+VYVCNLPRS DTEQLLH+F PHGTVLS +VCR+ E+GES+GSAYVTM S N+A+ AIAALD  D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G  RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ +
Sbjct:    3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSL----CLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 262          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445FLS8|A0A445FLS8_GLYSO (RNA-binding protein CP33, chloroplastic isoform A OS=Glycine soja OX=3848 GN=D0Y65_052625 PE=4 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 3.936e-93
Identity = 163/294 (55.44%), Postives = 194/294 (65.99%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEV--------------------------CRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            +AAN T    SLA   SSSLL      G   KRFV  S         L    SSK +  +  A+A   D    + EE  KL  PT+VYVCNLPRS DTEQLLH+F PHGTVLS +V                          CR+ E+GES+GSAYVTM S N+A+ AIAALD  D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G  RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ +
Sbjct:    3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSLC----LAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLVISLFQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 288          
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Match: tr|I1NCR2|I1NCR2_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100803098 PE=4 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 3.936e-93
Identity = 163/294 (55.44%), Postives = 194/294 (65.99%), Query Frame = 0
Query:    1 MAANCTTIPLSLATTCSSSLL-----LGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEV--------------------------CRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTE 263
            +AAN T    SLA   SSSLL      G   KRFV  S         L    SSK +  +  A+A   D    + EE  KL  PT+VYVCNLPRS DTEQLLH+F PHGTVLS +V                          CR+ E+GES+GSAYVTM S N+A+ AIAALD  D GGRE+RV+FS +MN K++ LET+NS P R IYYEGPHK+YVGNLSRSA P+D++ LFGRFG VASVRVLQDL+ G  RVYAFVSY S++ERDA+MSLNGTEF GR+LV+REGVE+ +
Sbjct:    3 LAANATP---SLAFA-SSSLLNHNPQFGAAPKRFVSSSSSSLC----LAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLVISLFQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 288          
The following BLAST results are available for this feature:
BLAST of rna-XM_004494814.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
|8.660e-7654.59Symbols: no symbol available | no full name availa... [more]
|4.458e-7454.33Symbols: no symbol available | no full name availa... [more]
|3.123e-6755.03Symbols: no symbol available | no full name availa... [more]
|1.713e-2334.72Symbols: no symbol available | no full name availa... [more]
|1.896e-2331.22Symbols: PSRP2 | plastid-specific ribosomal ... [more]
|1.896e-2331.22Symbols: PSRP2 | plastid-specific ribosomal ... [more]
|5.716e-2030.73Symbols: PDE322, CP33 | PIGMENT DEFECTIVE 322, chl... [more]
|2.713e-1928.96Symbols: CP31B | chloroplast RNA-binding protein 3... [more]
|7.010e-1827.89Symbols: no symbol available | no full name availa... [more]
|9.044e-1832.66Symbols: no symbol available | no full name availa... [more]
back to top
BLAST of rna-XM_004494814.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q8VYM4|PSRP2_ARATH1.834e-2231.22Small ribosomal subunit protein cS22 OS=Arabidopsi... [more]
sp|P19684|ROC5_NICSY8.316e-2234.4633 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
sp|P28644|ROC1_SPIOL2.802e-2032.9528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
sp|P82277|RRP2_SPIOL1.508e-1928.41Small ribosomal subunit protein cS22 OS=Spinacia o... [more]
sp|P19683|ROC4_NICSY3.288e-1933.5231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
sp|Q39061|CP33_ARATH5.574e-1930.73RNA-binding protein CP33, chloroplastic OS=Arabido... [more]
sp|P49314|ROC2_NICPL1.443e-1832.5731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
sp|Q9FGS0|CP31B_ARATH2.639e-1828.96RNA-binding protein CP31B, chloroplastic OS=Arabid... [more]
sp|Q08937|ROC2_NICSY2.824e-1832.1129 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
sp|Q08935|ROC1_NICSY1.915e-1731.6629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
back to top
BLAST of rna-XM_004494814.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XWT8|A0A1S2XWT8_CICAR0.000e+0100.0030S ribosomal protein 2, chloroplastic OS=Cicer ar... [more]
tr|A0A9D5AYW5|A0A9D5AYW5_PEA3.235e-12673.06RRM domain-containing protein OS=Pisum sativum OX=... [more]
tr|A0A2K3PCI0|A0A2K3PCI0_TRIPR8.894e-11065.1133 kDa ribonucleoprotein chloroplastic-like OS=Tri... [more]
tr|A0A8B8KYR6|A0A8B8KYR6_ABRPR3.511e-10463.7033 kDa ribonucleoprotein, chloroplastic-like OS=Ab... [more]
tr|A0A371FXB2|A0A371FXB2_MUCPR5.192e-10261.45RRM domain-containing protein (Fragment) OS=Mucuna... [more]
tr|A0A151TY51|A0A151TY51_CAJCA2.511e-10163.04RRM domain-containing protein OS=Cajanus cajan OX=... [more]
tr|K7N0E4|K7N0E4_SOYBN3.559e-9960.82RRM domain-containing protein OS=Glycine max OX=38... [more]
tr|A0A0B2PV29|A0A0B2PV29_GLYSO3.559e-9960.8228 kDa ribonucleoprotein, chloroplastic OS=Glycine... [more]
tr|A0A445FLS8|A0A445FLS8_GLYSO3.936e-9355.44RNA-binding protein CP33, chloroplastic isoform A ... [more]
tr|I1NCR2|I1NCR2_SOYBN3.936e-9355.44RRM domain-containing protein OS=Glycine max OX=38... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 45..164
e-value: 3.1E-23
score: 84.4
coord: 165..264
e-value: 2.3E-20
score: 75.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 185..252
e-value: 5.2E-11
score: 53.6
coord: 82..152
e-value: 1.6E-11
score: 55.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 80..158
score: 16.414856
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 183..260
score: 16.602465
NoneNo IPR availablePANTHERPTHR48025OS02G0815200 PROTEINcoord: 49..257
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 79..260

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3; organism=Cicer arietinum; type=mRNA; length=795bp
ATGGCTGCTAACTGTACAACAATTCCTCTCTCTTTGGCCACAACTTGTTC
CTCCTCGTTATTACTTGGAACTAAGGCAAAACGATTCGTTTATTTTTCAA
AGGTGCCTTATCCTTTTTTGTCGTTTCTTGTTACGGCTCGCAGCTCCAAG
CCTAAGGTTTCCACTGACTTCGCGGCTGCCGTCAATGGAGACGACGTCGT
TTCCTCGGAGGAGGAACCGGTGAAGCTGGGAAATCCAACCCAAGTTTATG
TTTGCAACCTTCCAAGAAGTTGGGACACTGAACAACTACTTCATTTGTTC
ACTCCTCACGGAACCGTTTTATCTGTAGAGGTTTGCCGGAATGTGGAGAG
TGGTGAGAGTAAAGGGAGTGCTTATGTCACGATGAGATCTTATAACACTG
CCAAAACTGCAATTGCTGCATTGGATGGATTGGATGTTGGTGGACGCGAA
ATGCGGGTTAAATTTTCATTTCAGATGAATTCTAAGAAGAAAGGTTTAGA
GACATTAAACTCGCCGCCCGCGAGAACTATATACTATGAAGGTCCTCATA
AGGTGTATGTTGGGAATCTTTCTAGGTCTGCTACACCTGAAGACGTGAGA
CATTTGTTTGGTAGATTTGGAAATGTGGCTAGTGTGAGGGTGTTGCAAGA
TTTGAAAATGGGGAAAAGCCGCGTCTATGCCTTTGTCTCTTATCTTTCTC
AGACAGAACGCGATGCCTCTATGTCCCTCAATGGAACTGAATTTTGTGGT
CGAATTCTAGTGGTTAGAGAGGGCGTTGAGAAGACTGAGACCTAA
back to top

protein sequence of rna-XM_004494814.3_CaCDCfrontier-NCBI_v1

>rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=264bp
MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSK
PKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLF
TPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGRE
MRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVR
HLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCG
RILVVREGVEKTET
back to top

mRNA from alignment at chr3:39731291..39733014+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3; organism=Cicer arietinum; type=mRNA; length=1724bp; location=Sequence derived from: chr3:39731291..39733014+ (Cicer arietinum
GATATATTACCGATAAAAGTATAACGTAACAGTTTGGGGGAAATTTGGAT AAACTATGGCTGCTAACTGTACAACAATTCCTCTCTCTTTGGCCACAACT TGTTCCTCCTCGTTATTACTTGGAACTAAGGCAAAACGATTCGTTTATTT TTCAAAGGTGCCTTATCCTTTTTTGTCGTTTCTTGTTACGGCTCGCAGCT CCAAGCCTAAGGTTTCCACTGACTTCGCGGCTGCCGTCAATGGAGACGAC GTCGTTTCCTCGGAGGAGGAACCGGTGAAGCTGGGAAATCCAACCCAAGT TTATGTTTGCAACCTTCCAAGAAGTTGGGACACTGAACAACTACTTCATT TGTTCACTCCTCACGGAACCGTTTTATCTGTAGAGGTTCAATATTGCTTG TTAaatgtattttcattattaaacTAGTCATAATGATTATAGTCTGAATG AGCAATGTGATTGTGTTGTGTTCATGCTTAATTGACGTCTACTGCTGTGA TGTAGGTTTGCCGGAATGTGGAGAGTGGTGAGAGTAAAGGGAGTGCTTAT GTCACGATGAGATCTTATAACACTGCCAAAACTGCAATTGCTGCATTGGA TGGATTGGTTAGTCATTGTCAAATTTTATCAATGTGTTTTTTCTGGCCAT TTCGtctgatactttttttttttttcttttcattttaattgaaGGATGTT GGTGGACGCGAAATGCGGGTTAAATTTTCATTTCAGATGAATTCTAAGAA GAAAGGTTTAGAGACATTAAACTCGCCGCCCGCGAGAACTATATACTATG AAGGTCCTCATAAGGTGTATGTTGGGAATCTTTCTAGGTCTGCTACACCT GAAGACGTGAGACATTTGTTTGGTAGATTTGGAAATGTGGCTAGTGTGAG GGTGTTGCAAGATTTGAAAATGGGGAAAAGCCGCGTCTATGCCTTTGTCT CTTATCTTTCTCAGACAGAACGCGATGCCTCTATGTCCCTCAATGGAACT GTAAAATATGCACTCACCATTGTTCATTGTTCTGCTTCTTATTTCACTTG TTTGTATCTGTCTGATGGGTAGTCTTGTTCTTTCAGGAATTTTGTGGTCG AATTCTAGTGGTTAGAGAGGGCGTTGAGAAGACTGAGACCTAATTGGAGC TTTCAGATTATGCATAGAGAATATTGCAATTTTGGGTGTCTAGGATGGAG GAAGCTCTCTGCTCTGTTATGTGCAAGCGATATTGTTGTGAGAGCCTTCC TAAACTAGATAATGTCAGCTGGAACTGGAGGTTACTGTTCCATCAAAATG TGAATTTTCATCCCTACATCTTTGTTGTATGTCAAATTGCATTAACCAGT GTGTGACTGTATGTATGTATGGAACTTGATATAGGAACTTTTCTTTCTTT AGTTTTGCATATATTTATAGATATTCAATCTGTATTGAGCAGTGACCAAG TGCAGTTGTATTTAAGACTGCAGATGATCTCGTGACAATTTGATTTGAAG AAAGTGTAATTTATTGGCATAACCCACATGCTTCTTTAGAATGATTAGTT TAAGTTGAGCGAACTACATAAGGACTGTTATGTTGTCTTTGGAAATCATG CACATCCAGAACCCTGTTATCAGTGGTTTCCTAACATTAAAGACGACGAC TCTGACTCTGATGAAGGTTCTCAGCAGTTGACCCTTCACCACGAGATTCT TTTAAGACATTTCCTAATTGTTTT
back to top

Coding sequence (CDS) from alignment at chr3:39731291..39733014+

>rna-XM_004494814.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004494814.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004494814.3; organism=Cicer arietinum; type=CDS; length=795bp; location=Sequence derived from: chr3:39731291..39733014+ (Cicer arietinum
ATGGCTGCTAACTGTACAACAATTCCTCTCTCTTTGGCCACAACTTGTTC
CTCCTCGTTATTACTTGGAACTAAGGCAAAACGATTCGTTTATTTTTCAA
AGGTGCCTTATCCTTTTTTGTCGTTTCTTGTTACGGCTCGCAGCTCCAAG
CCTAAGGTTTCCACTGACTTCGCGGCTGCCGTCAATGGAGACGACGTCGT
TTCCTCGGAGGAGGAACCGGTGAAGCTGGGAAATCCAACCCAAGTTTATG
TTTGCAACCTTCCAAGAAGTTGGGACACTGAACAACTACTTCATTTGTTC
ACTCCTCACGGAACCGTTTTATCTGTAGAGGTTTGCCGGAATGTGGAGAG
TGGTGAGAGTAAAGGGAGTGCTTATGTCACGATGAGATCTTATAACACTG
CCAAAACTGCAATTGCTGCATTGGATGGATTGGATGTTGGTGGACGCGAA
ATGCGGGTTAAATTTTCATTTCAGATGAATTCTAAGAAGAAAGGTTTAGA
GACATTAAACTCGCCGCCCGCGAGAACTATATACTATGAAGGTCCTCATA
AGGTGTATGTTGGGAATCTTTCTAGGTCTGCTACACCTGAAGACGTGAGA
CATTTGTTTGGTAGATTTGGAAATGTGGCTAGTGTGAGGGTGTTGCAAGA
TTTGAAAATGGGGAAAAGCCGCGTCTATGCCTTTGTCTCTTATCTTTCTC
AGACAGAACGCGATGCCTCTATGTCCCTCAATGGAACTGAATTTTGTGGT
CGAATTCTAGTGGTTAGAGAGGGCGTTGAGAAGACTGAGACCTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding