rna-XM_004495039.2

Transcript Overview
Namerna-XM_004495039.2
Unique Namerna-XM_004495039.2_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length495
Product60S ribosomal protein L21-1-like
References
External references for this mRNA
DatabaseAccession
GeneID101500091
GenBankXM_004495039.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1179225..1180893 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ancanL0156Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL090Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL365Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL370Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0543Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0646Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0834Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL093Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0336Cicer arietinum ICC 4958 genome v2Cicer arietinum
caicanL0376Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancrR315Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canccR0513Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0549Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR342Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR428Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR264Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR230Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR279Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR239Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvrvR323Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvrvR330Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR285Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR376Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR302Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvssR291Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR306Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR342Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR206Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR204Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR219Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR249Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR239Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR271Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR288Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR255Pisum sativum Cameor genome v1aPisum sativum
canpsR285Pisum sativum Cameor genome v1aPisum sativum
avjcanL315Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL327Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL414Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR202Cicer arietinum
cancarR212Cicer arietinum
cancarR242Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.3g058840.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat06G0150300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg1792.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g048640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cr_09480.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_08981.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_07749Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101500091gene-LOC101500091_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004495039.2-1exon-XM_004495039.2-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004495039.2-2exon-XM_004495039.2-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004495096.1cds-XP_004495096.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS
cds-XP_004495096.1cds-XP_004495096.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004495039.2_CaCDCfrontier-NCBI_v1rna-XM_004495039.2_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004495039.2_CaCDCfrontier-NCBI_v1rna-XM_004495039.2_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_004495039.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3136407-3137430 REVERSE LENGTH=164)

HSP 1 Score: 285.419 bits (729), Expect = 4.965e-100
Identity = 132/164 (80.49%), Postives = 150/164 (91.46%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD++VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+ N+I+RKRIHVRVEHV  SRC EEF+LRK KND+LKA AKA GE ISTKR+P+GPKPGF VEG TLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3106549-3107606 FORWARD LENGTH=164)

HSP 1 Score: 285.419 bits (729), Expect = 4.965e-100
Identity = 132/164 (80.49%), Postives = 150/164 (91.46%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD++VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+ N+I+RKRIHVRVEHV  SRC EEF+LRK KND+LKA AKA GE ISTKR+P+GPKPGF VEG TLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:21430034-21430827 REVERSE LENGTH=164)

HSP 1 Score: 283.878 bits (725), Expect = 1.934e-99
Identity = 131/164 (79.88%), Postives = 151/164 (92.07%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD++VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+ N+I+RKRIHVRVEHV  SRC EEF+LRK +ND LKA+AKA+GE ISTKR+P+GPKPGF VEG TLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:21355567-21356364 FORWARD LENGTH=164)

HSP 1 Score: 283.878 bits (725), Expect = 1.934e-99
Identity = 131/164 (79.88%), Postives = 151/164 (92.07%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD++VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+ N+I+RKRIHVRVEHV  SRC EEF+LRK +ND LKA+AKA+GE ISTKR+P+GPKPGF VEG TLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q43291|RL211_ARATH (Large ribosomal subunit protein eL21z/eL21y OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 4.731e-99
Identity = 132/164 (80.49%), Postives = 150/164 (91.46%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD++VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+ N+I+RKRIHVRVEHV  SRC EEF+LRK KND+LKA AKA GE ISTKR+P+GPKPGF VEG TLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FDZ9|RL212_ARATH (Large ribosomal subunit protein eL21x/eL21w OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.843e-98
Identity = 131/164 (79.88%), Postives = 151/164 (92.07%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD++VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+ N+I+RKRIHVRVEHV  SRC EEF+LRK +ND LKA+AKA+GE ISTKR+P+GPKPGF VEG TLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|O82574|RL21_CYAPA (Large ribosomal subunit protein eL21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.824e-51
Identity = 86/158 (54.43%), Postives = 111/158 (70.25%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAK-AKGEVISTKRKPEGPKPG--FKVEGATLETVTPIPYD 155
            MP  +G R+RTR  F+R F+  G + L+TYL  + IG+YVD+  N AVHKGMP K+YHGRTG VWNVTKRAIGVE+NK+VR++I++KRIHVR++HV  S C + F  R  +ND++K +A  AK  V STKR P  PK G   K +G   ET   IPY+
Sbjct:    1 MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q02753|RL21A_YEAST (Large ribosomal subunit protein eL21A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.500e-50
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPG--FKVEGATLETVTPIPYD 155
            M   HG RSRTR  F R FRK G + L+TYL+ Y +GD VDI+ NG++ KGMPHKFY G+TG V+NVTK ++GV +NK V N+ L KR+++RVEH+  S+C +EF  R   N   +AEAKA+G  +  KR+P  P+       EG   +T+ P+PY+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q12672|RL21B_YEAST (Large ribosomal subunit protein eL21B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.453e-49
Identity = 76/157 (48.41%), Postives = 105/157 (66.88%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPG--FKVEGATLETVTPIPYD 155
            M   HG RSRTR  F R FRK G + ++TYL+ Y +GD VDI+ NG++ KGMPHKFY G+TG V+NVTK ++GV +NK V N+ L KR+++RVEH+  S+C +EF  R   N   +AEAKA+G  +  KR+P  P+       EG   +T+ P+PY+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q54X53|RL21_DICDI (Large ribosomal subunit protein eL21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.017e-49
Identity = 82/159 (51.57%), Postives = 103/159 (64.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLE--TVTPIPYDVV 157
            MP   GLR+RTR  FSR FR  G +  TT+LRT+ +GDYVDI+  G VHKGMPHKFYHGRTGRVWNVT RA+GV +NK+V  +I+ K+IHVR EHV PS        R  +N +   EAK  G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:    1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|O42706|RL21B_SCHPO (Large ribosomal subunit protein eL21B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl2102 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.169e-47
Identity = 76/157 (48.41%), Postives = 108/157 (68.79%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVT--PIPYD 155
            MP  +G+R+RTR +F R FR+ G I L+TYL+TY +GD VDI+VNGAV KGMPHK+YHG+TG V+NVT+ ++GV + K V N+ + KR++VR+EHV  S+C ++F  R   N+  + EAKA+G+ +  +R+P  P     V     E VT  P+ YD
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9UUC1|RL21A_SCHPO (Large ribosomal subunit protein eL21A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl2101 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.249e-47
Identity = 76/157 (48.41%), Postives = 108/157 (68.79%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVT--PIPYD 155
            MP  +G+R+RTR +F R FR+ G I L+TYL+TY +GD VDI+VNGAV KGMPHK+YHG+TG V+NVT+ ++GV + K V N+ + KR++VR+EHV  S+C ++F  R   N+  + EAKA+G+ +  +R+P  P     V     E VT  P+ YD
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|P49666|RL21_PIG (Large ribosomal subunit protein eL21 OS=Sus scrofa OX=9823 GN=RPL21 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.272e-46
Identity = 79/154 (51.30%), Postives = 101/154 (65.58%), Query Frame = 0 
Query:    6 GLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPG--FKVEGATLETVTPIPYDVV 157
            G R  TR  FSRPFRK G + L TY+R Y  GD VDI+  G V KGMPHK YHG+TGRV+NVT+ A+G+ VNKQV+ KIL KRI+VR+EH+  S+  + F  R  +NDQ K EAK KG  +  KR+P  P+     +  G   E + PIPY+ +
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Match: sp|P46778|RL21_HUMAN (Large ribosomal subunit protein eL21 OS=Homo sapiens OX=9606 GN=RPL21 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.272e-46
Identity = 79/154 (51.30%), Postives = 101/154 (65.58%), Query Frame = 0 
Query:    6 GLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPG--FKVEGATLETVTPIPYDVV 157
            G R  TR  FSRPFRK G + L TY+R Y  GD VDI+  G V KGMPHK YHG+TGRV+NVT+ A+G+ VNKQV+ KIL KRI+VR+EH+  S+  + F  R  +NDQ K EAK KG  +  KR+P  P+     +  G   E + PIPY+ +
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XVG8|A0A1S2XVG8_CICAR (60S ribosomal protein L21-1-like OS=Cicer arietinum OX=3827 GN=LOC101492631 PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.689e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LGM4|A0A2K3LGM4_TRIPR (60S ribosomal protein l21-1-like OS=Trifolium pratense OX=57577 GN=L195_g033658 PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 5.074e-115
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MLR7|A0A2Z6MLR7_TRISU (60S ribosomal protein L21 OS=Trifolium subterraneum OX=3900 GN=TSUD_158190 PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 5.074e-115
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|I3T8M7|I3T8M7_MEDTR (60S ribosomal L21-like protein OS=Medicago truncatula OX=3880 GN=25484261 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 5.074e-115
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LJI0|A0A2Z6LJI0_TRISU (60S ribosomal protein L21 OS=Trifolium subterraneum OX=3900 GN=TSUD_341370 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.047e-114
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVD+RVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|G8A186|G8A186_MEDTR (60S ribosomal L21-like protein OS=Medicago truncatula OX=3880 GN=25499569 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.047e-114
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVD+RVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L910|A0A2K3L910_TRIPR (60S ribosomal protein l21-1-like OS=Trifolium pratense OX=57577 GN=L195_g030953 PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 1.362e-114
Identity = 160/164 (97.56%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVD+RVNGA+HKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDVRVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|B7FH57|B7FH57_MEDTR (60S ribosomal protein L21-1 OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 1.537e-114
Identity = 161/164 (98.17%), Postives = 161/164 (98.17%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSR RDSFSRPFRKKGTIAL TYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGF VEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRARDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4XPN1|A0A9D4XPN1_PEA (60S ribosomal protein L21-2 OS=Pisum sativum OX=3888 GN=KIW84_031083 PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.068e-114
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKI ND+LKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY
Sbjct:   12 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKINNDKLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 175
[Close]
BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4XQA0|A0A9D4XQA0_PEA (60S ribosomal protein L21-2, variant 2 OS=Pisum sativum OX=3888 GN=KIW84_031083 PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 2.437e-114
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0 
Query:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
            MPAGHGLRSRTRDSFSRPFRKKGTIAL TYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKI ND+LKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY
Sbjct:    1 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKINNDKLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
The following BLAST results are available for this feature:
BLAST of rna-XM_004495039.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
|4.965e-10080.49Symbols: no symbol available | no full name availa... [more]
|4.965e-10080.49Symbols: no symbol available | no full name availa... [more]
|1.934e-9979.88Symbols: no symbol available | no full name availa... [more]
|1.934e-9979.88Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004495039.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q43291|RL211_ARATH4.731e-9980.49Large ribosomal subunit protein eL21z/eL21y OS=Ara... [more]
sp|Q9FDZ9|RL212_ARATH1.843e-9879.88Large ribosomal subunit protein eL21x/eL21w OS=Ara... [more]
sp|O82574|RL21_CYAPA3.824e-5154.43Large ribosomal subunit protein eL21 OS=Cyanophora... [more]
sp|Q02753|RL21A_YEAST5.500e-5049.04Large ribosomal subunit protein eL21A OS=Saccharom... [more]
sp|Q12672|RL21B_YEAST1.453e-4948.41Large ribosomal subunit protein eL21B OS=Saccharom... [more]
sp|Q54X53|RL21_DICDI2.017e-4951.57Large ribosomal subunit protein eL21 OS=Dictyostel... [more]
sp|O42706|RL21B_SCHPO1.169e-4748.41Large ribosomal subunit protein eL21B OS=Schizosac... [more]
sp|Q9UUC1|RL21A_SCHPO1.249e-4748.41Large ribosomal subunit protein eL21A OS=Schizosac... [more]
sp|P49666|RL21_PIG6.272e-4651.30Large ribosomal subunit protein eL21 OS=Sus scrofa... [more]
sp|P46778|RL21_HUMAN6.272e-4651.30Large ribosomal subunit protein eL21 OS=Homo sapie... [more]
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BLAST of rna-XM_004495039.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XVG8|A0A1S2XVG8_CICAR1.689e-116100.0060S ribosomal protein L21-1-like OS=Cicer arietinu... [more]
tr|A0A2K3LGM4|A0A2K3LGM4_TRIPR5.074e-11598.7860S ribosomal protein l21-1-like OS=Trifolium prat... [more]
tr|A0A2Z6MLR7|A0A2Z6MLR7_TRISU5.074e-11598.7860S ribosomal protein L21 OS=Trifolium subterraneu... [more]
tr|I3T8M7|I3T8M7_MEDTR5.074e-11598.7860S ribosomal L21-like protein OS=Medicago truncat... [more]
tr|A0A2Z6LJI0|A0A2Z6LJI0_TRISU1.047e-11498.1760S ribosomal protein L21 OS=Trifolium subterraneu... [more]
tr|G8A186|G8A186_MEDTR1.047e-11498.1760S ribosomal L21-like protein OS=Medicago truncat... [more]
tr|A0A2K3L910|A0A2K3L910_TRIPR1.362e-11497.5660S ribosomal protein l21-1-like OS=Trifolium prat... [more]
tr|B7FH57|B7FH57_MEDTR1.537e-11498.1760S ribosomal protein L21-1 OS=Medicago truncatula... [more]
tr|A0A9D4XPN1|A0A9D4XPN1_PEA2.068e-11498.1760S ribosomal protein L21-2 OS=Pisum sativum OX=38... [more]
tr|A0A9D4XQA0|A0A9D4XQA0_PEA2.437e-11498.1760S ribosomal protein L21-2, variant 2 OS=Pisum sa... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:2.30.30.70:FF:000001coord: 1..98
e-value: 3.9E-45
score: 153.6
NoneNo IPR availableFUNFAMG3DSA:6.10.250.3260:FF:000002coord: 99..158
e-value: 1.8E-31
score: 109.7
NoneNo IPR availableGENE3D6.10.250.3260coord: 99..156
e-value: 8.3E-23
score: 82.2
IPR001147Large ribosomal subunit protein eL21PFAMPF01157Ribosomal_L21ecoord: 1..101
e-value: 1.7E-40
score: 148.3
IPR001147Large ribosomal subunit protein eL21PANTHERPTHR2098160S RIBOSOMAL PROTEIN L21coord: 1..162
IPR036948Large ribosomal subunit protein eL21 superfamilyGENE3D2.30.30.70Ribosomal protein L21coord: 1..97
e-value: 1.7E-44
score: 151.8
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 3..99

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004495039.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495039.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495039.2; organism=Cicer arietinum; type=mRNA; length=495bp
ATGCCTGCCGGTCATGGTTTGCGATCTCGCACCAGAGATTCATTCTCTCG
CCCATTCCGTAAGAAGGGAACCATTGCCCTAACCACCTACCTCAGGACTT
ATCATATCGGTGACTATGTTGACATTAGGGTTAACGGTGCCGTTCACAAA
GGTATGCCTCATAAATTCTACCATGGACGTACCGGACGTGTCTGGAATGT
CACCAAACGCGCCATTGGAGTCGAAGTTAACAAGCAGGTTAGGAACAAGA
TTTTGAGAAAGAGGATTCATGTTCGGGTGGAACATGTTATGCCTTCCAGG
TGCACCGAGGAGTTCCGATTGAGGAAGATCAAGAATGATCAACTGAAGGC
TGAGGCCAAGGCCAAGGGAGAGGTCATAAGCACAAAGCGCAAGCCAGAGG
GTCCCAAACCTGGTTTCAAGGTAGAAGGTGCTACCTTGGAGACAGTTACT
CCAATACCATATGATGTTGTTAATGATCTCAAAGGAGGATACTAG
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protein sequence of rna-XM_004495039.2_CaCDCfrontier-NCBI_v1

>rna-XM_004495039.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495039.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495039.2_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=164bp
MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHK
GMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSR
CTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVT
PIPYDVVNDLKGGY
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mRNA from alignment at chr4:1179225..1180893+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004495039.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495039.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495039.2; organism=Cicer arietinum; type=mRNA; length=1669bp; location=Sequence derived from: chr4:1179225..1180893+ (Cicer arietinum
AAGCCCAATATGAAATTCTAGGGTTCTTATTCCACTTATTGGCACTCCAG
CTCGTAGTGCGAGTGCAAGGTAGTGAAGGAGAGAGCGGCAGCAGCAGAAA
CCCTAGAAGTAGAAAAATGCCTGCCGGTCATGGTTTGCGATCTCGCACCA
GAGATTCATTCTCTCGCCCATTCCGTAAGAAGGGAACCATTGCCCTAACC
ACCTACCTCAGGACTTATCATATCGGTGACTATGTTGACATTAGGGTTAA
CGGTGCCGTTCACAAAGGTATGCCTCATAAATTCTACCATGGACGTACCG
GACGTGTCTGGAATGTCACCAAACGCGCCATTGGAGTCGAAGTTAACAAG
CAGGTTAATCGTAGCTTCTTAACTATTTCTCATTCAGaatcataatttaa
ttaatatacatgtcttgctttgtttttctttttattttattttcatgttt
ttattCTAGTTTCGTTTGGCTTAGTGAGGAATTTTAGTGTCTACGGTTTT
ATCTCCAATCCTATGTTATGTGATATGCACTTTTGATCATTTTTGCTTTT
AGTTTATTCAGTCGTCTTCTATTGACGATTTTGGTGATATTTTGTTTCAC
GTTTTCGTTTTAAATAAATTGCTTTTGTTTGAAGTAAGTATGCTTCCTTG
CTTTAGTAGCCTCTTTCGGACCATGTTTGAGTTGTTTATGCTACTTTTTG
AATTGAATTGTCGAGTGTGTTTTCTCTTTGATTTGATAGTTCATTGCTTT
GTTCATTTGTTCAGTTTGTTGCTTTAATCCTGTTTTTGTCGGTTAGATTT
TGGATTTTTGTATGGAGTTGGTCTTTTGGTTCTCAACTTATTGGGAGACC
GATTATGTTTGCAATCCCTAAAACGTACCATTTTGACTGATATAATTCAT
GCAAAAAATTCATCCATGTTAGTCTctaattttgatatttcaacAGTATa
gatatatgaaaaatttccattaaaatcacctaaatattGATAGATAATCA
ATGGAAAATTTTGTAGACTAAACATGATATGAGGGTATTCTGTATGGACT
AAAAACACGATATAAGGTTGAGATGAATAACTTGATTTTACTTTGAGAAT
ATCTCTTTGAATGCTTGAATTGTTGTTGcagaattttttttcaatttttt
attttctacaaGTGCTTGTGAACTTTCTCATATAAACTGGCTGTTGGTCA
TTCTGCACGTGTTTAGCATTTTGAAATGGTGTACTGTATGTGGTCCAGGT
TAGGAACAAGATTTTGAGAAAGAGGATTCATGTTCGGGTGGAACATGTTA
TGCCTTCCAGGTGCACCGAGGAGTTCCGATTGAGGAAGATCAAGAATGAT
CAACTGAAGGCTGAGGCCAAGGCCAAGGGAGAGGTCATAAGCACAAAGCG
CAAGCCAGAGGGTCCCAAACCTGGTTTCAAGGTAGAAGGTGCTACCTTGG
AGACAGTTACTCCAATACCATATGATGTTGTTAATGATCTCAAAGGAGGA
TACtagaaatttaatttcatttttgtcttGTCTGTTAGACTACCTTGTTT
TGATTTTTGCCTTTATTTCATCTTTATTTCTTCAATTGAACAGTCTTGAA
GTTTATGAAAAATCAGACTCAAGTTTTGGCTTGTTTGATTctaaatacaa
ttattttttttattaagca
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Coding sequence (CDS) from alignment at chr4:1179225..1180893+

>rna-XM_004495039.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495039.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495039.2; organism=Cicer arietinum; type=CDS; length=495bp; location=Sequence derived from: chr4:1179225..1180893+ (Cicer arietinum
ATGCCTGCCGGTCATGGTTTGCGATCTCGCACCAGAGATTCATTCTCTCG
CCCATTCCGTAAGAAGGGAACCATTGCCCTAACCACCTACCTCAGGACTT
ATCATATCGGTGACTATGTTGACATTAGGGTTAACGGTGCCGTTCACAAA
GGTATGCCTCATAAATTCTACCATGGACGTACCGGACGTGTCTGGAATGT
CACCAAACGCGCCATTGGAGTCGAAGTTAACAAGCAGGTTAGGAACAAGA
TTTTGAGAAAGAGGATTCATGTTCGGGTGGAACATGTTATGCCTTCCAGG
TGCACCGAGGAGTTCCGATTGAGGAAGATCAAGAATGATCAACTGAAGGC
TGAGGCCAAGGCCAAGGGAGAGGTCATAAGCACAAAGCGCAAGCCAGAGG
GTCCCAAACCTGGTTTCAAGGTAGAAGGTGCTACCTTGGAGACAGTTACT
CCAATACCATATGATGTTGTTAATGATCTCAAAGGAGGATACtag
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001147Ribosomal_eL21
IPR036948Ribosomal_eL21_sf
IPR008991Translation_prot_SH3-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome