rna-XM_004495234.3

Transcript Overview
Namerna-XM_004495234.3
Unique Namerna-XM_004495234.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length453
Productuncharacterized LOC101506081
References
External references for this mRNA
DatabaseAccession
GeneID101506081
GenBankXM_004495234.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1982330..1983207 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL090Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL353Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL367Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL133Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0631Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0777Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL093Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancanR124Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0335Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1031Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0376Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0457Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0416Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0459Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR330Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR342Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR410Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR264Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR230Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR279Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR239Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR247Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR313Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR256Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR285Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR355Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canpvR365Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR300Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvssR268Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR291Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR342Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR206Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR204Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR219Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR249Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR267Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR239Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR276Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR275Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR248Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canpsR255Pisum sativum Cameor genome v1aPisum sativum
canpsR285Pisum sativum Cameor genome v1aPisum sativum
canpsR311Pisum sativum Cameor genome v1aPisum sativum
avjcanL318Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL329Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL414Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR202Cicer arietinum
cancarR212Cicer arietinum
cancarR221Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg40896.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat6g206880.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014657481.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va02G042690.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.3g145040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.007G058000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun07g239000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_09044.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr07.2633Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg2001.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g116000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_11464Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun07g108700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.3g053120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan02g224800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
LR48_mrnaVigan02g119300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.3g064000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_09548.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_01954Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.007G173200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_035230Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_007715Cajanus cajan Asha genome v1.0Cajanus cajan
Va02G066510.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr07.509Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat06G0166900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_07816Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_09046.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004496659.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_04581Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101506081gene-LOC101506081_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004495234.3-1exon-XM_004495234.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004495291.1cds-XP_004495291.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004495234.3_CaCDCfrontier-NCBI_v1rna-XM_004495234.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004495234.3_CaCDCfrontier-NCBI_v1rna-XM_004495234.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
BLAST of rna-XM_004495234.3 vs. Araport11
Match: | (Symbols: HSP1 | heat shock protein 20-like protein 1 | chr4:8510983-8511441 FORWARD LENGTH=152)

HSP 1 Score: 104.76 bits (260), Expect = 3.984e-29
Identity = 62/148 (41.89%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   10 VNPFAKKRSQHSVV------SSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTG-WKLVVTVPKTKGN 150
            ++P  +  + ++++      +  P KKL RLPH+F++ LELP  SDADV++EE+   FRFVA        GGGVRA+ +EI PG+TKI++ R +G     +   +      +D+WRFRLP  T+PE VT  C G  +L+VTVPK + N
Sbjct:    3 IHPLPRNENNNNLIHHARDPTREPGKKLRRLPHIFSRVLELPLKSDADVAVEESHDCFRFVAET--DGGGGGGVRAYMVEIHPGVTKILV-RTNGSSSLGLSLDE----LELDVWRFRLPESTRPELVTVDCDGDGELIVTVPKIEDN 143          
BLAST of rna-XM_004495234.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:7977774-7978370 REVERSE LENGTH=198)

HSP 1 Score: 105.531 bits (262), Expect = 5.681e-29
Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 0
Query:   19 QHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKT 147
             H   +  P K L RLPH+F + LELP  S+ADV++EE    FRFVA         G +RA+ +EI PGITKIV+ R +G     +   +      +D+WRFRLP  T+PE VT  C    L+VTVPK 
Sbjct:   49 HHHNPTREPGKNLRRLPHIFNRVLELPLRSEADVAVEERHDCFRFVAETVGLCNGDGEMRAYMVEIHPGITKIVV-RTNGSSSLGLSLDE----LELDVWRFRLPESTRPELVTVACVDGDLIVTVPKN 172          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XVR5|A0A1S2XVR5_CICAR (Uncharacterized protein LOC101506081 OS=Cicer arietinum OX=3827 GN=LOC101506081 PE=4 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 1.170e-105
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150
            MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN
Sbjct:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VLB5|A0A072VLB5_MEDTR (Heat shock 22 kDa protein, putative OS=Medicago truncatula OX=3880 GN=25484355 PE=4 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.278e-87
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150
            MFAKKVT  VNPFAKKRSQH VVSSTP   +KKLWRLPHVFAK LELPFPSDADVSIEET QFFRFVASC K N+ N GGVRAHAIEILPGITKIVIKRIDGGDV VVGQ++RRS+ GVDLWRFRLPPWTQPERVTAVCTG KLVVTVPK KGN
Sbjct:    1 MFAKKVTN-VNPFAKKRSQHGVVSSTPNVNTKKLWRLPHVFAKMLELPFPSDADVSIEETSQFFRFVASCNKMNIFNAGGVRAHAIEILPGITKIVIKRIDGGDVAVVGQQERRSSLGVDLWRFRLPPWTQPERVTAVCTGGKLVVTVPKIKGN 153          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A392NF94|A0A392NF94_9FABA (SHSP domain-containing protein OS=Trifolium medium OX=97028 GN=A2U01_0019012 PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.345e-82
Identity = 125/155 (80.65%), Postives = 135/155 (87.10%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPS----KKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150
            MFAKKVT  VNPFAKKRSQH VVSSTP+    K+LWRLPHVFAK LELPFPSDAD+SIEETPQFFRFVA C K ++ N GGVRA AIEILPGITKIVIKR DGGDV V GQ+++RS+ GVDLWRFRLPPWTQPERVTAVC+G KLVVTVPK KGN
Sbjct:    3 MFAKKVTT-VNPFAKKRSQHGVVSSTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMSIFNAGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLVVTVPKIKGN 156          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LLJ8|A0A2K3LLJ8_TRIPR (SHSP domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g035396 PE=4 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.350e-82
Identity = 125/155 (80.65%), Postives = 135/155 (87.10%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPS----KKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150
            MFAKKVT  VNPFAKKRSQH VVS+TP+    K+LWRLPHVFAK LELPFPSDAD+SIEETPQFFRFVA C K N+ N GGVRA AIEILPGITKIVIKR DGGDV V GQ+++RS+ GVDLWRFRLPPWTQPERVTAVC+G KLVVTVPK KGN
Sbjct:    1 MFAKKVTT-VNPFAKKRSQHGVVSTTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMNIFNDGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLVVTVPKIKGN 154          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D5A4I2|A0A9D5A4I2_PEA (SHSP domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_061669 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 3.192e-80
Identity = 124/153 (81.05%), Postives = 133/153 (86.93%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKG 149
            MFAKK+T  VNPFAKKRSQH VVSST    +KKLWRLPHVFA+ LELPFPSDADVSIEET QFFRFVASC +TN+ N GGVRAHAIEILPGITKIV+KR DGGDV V GQK+R S++ VDLWRFRLPP TQPERVTAVCTG KLVVTVPK KG
Sbjct:    1 MFAKKLTT-VNPFAKKRSQHVVVSSTSNANTKKLWRLPHVFARMLELPFPSDADVSIEETTQFFRFVASCNQTNIFNSGGVRAHAIEILPGITKIVVKRFDGGDVVVAGQKERGSSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIKG 152          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PMG2|A0A2Z6PMG2_TRISU (DUF4283 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_404510 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 8.481e-75
Identity = 118/149 (79.19%), Postives = 128/149 (85.91%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPS----KKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTV 144
            MFAKKVT  VNPFAKKRSQH VVSSTP+    K+LWRLPHVFAK LELPFPSDAD+SIEETPQFFRFVA C K N+ N GGVRA AIEILPGITKIVIKR DGGDV V GQ+++RS+ GVDLWRFRLPPWTQPERVTAVC+G KL V +
Sbjct:    3 MFAKKVTT-VNPFAKKRSQHGVVSSTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMNIFNAGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLSVLL 150          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MJ26|A0A8B8MJ26_ABRPR (Uncharacterized protein LOC113873614 OS=Abrus precatorius OX=3816 GN=LOC113873614 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.717e-69
Identity = 112/153 (73.20%), Postives = 121/153 (79.08%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150
            MF+KKV    N F KKRSQH VVSSTP   SKKL++LPHVFAK LELPF SDADV IEET QFFRFVAS    N N GGVRAH IEILPGITKIVIKR+DGGDVTV G++  R    +DLWRFRLP WTQPE VTAVC G KLVVTVPK++GN
Sbjct:    1 MFSKKV----NLFIKKRSQHGVVSSTPCSNSKKLYKLPHVFAKMLELPFSSDADVLIEETAQFFRFVASFNMLNANAGGVRAHVIEILPGITKIVIKRMDGGDVTVAGKQQHR----LDLWRFRLPAWTQPEMVTAVCIGGKLVVTVPKSRGN 145          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N0Q1|A0A4D6N0Q1_VIGUN (HSP20 family protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1476 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.459e-62
Identity = 104/148 (70.27%), Postives = 115/148 (77.70%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTK 148
            MFAK     + PFA+KRSQ  VVSS P+KKL RLPHVF+K LELP PSD DV +EETPQ FRFVASC     N GGVRA AIEILPGITKIVIKR+DG DV V GQ+ +  + GV LWRFRLPPWTQPE VTAVC+G KL+VTVPK K
Sbjct:    1 MFAK----TLKPFAEKRSQRGVVSSAPTKKLLRLPHVFSKILELPCPSDDDVFVEETPQSFRFVASC-----NAGGVRALAIEILPGITKIVIKRMDGTDVAVAGQR-QYGSLGVGLWRFRLPPWTQPEMVTAVCSGGKLMVTVPKNK 138          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V458|A0A1S3V458_VIGRR (Uncharacterized protein LOC106771489 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771489 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.647e-60
Identity = 102/148 (68.92%), Postives = 113/148 (76.35%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTK 148
            MFAK     + PFA+KRSQ  VVSS+P+KKL RLPHVF+K LELP  S  DV +EETP FFRFVA C     N GGVRA AIEILPGITKIVIKR+DG DV V GQ+ + S+ GV LWRFRLPP TQPE VTAVC+G KLVVTVPK K
Sbjct:    1 MFAK----TLKPFAEKRSQRGVVSSSPTKKLLRLPHVFSKILELPCSSSDDVFVEETPHFFRFVAPC-----NAGGVRALAIEILPGITKIVIKRMDGSDVAVAGQR-QYSSLGVGLWRFRLPPGTQPEMVTAVCSGGKLVVTVPKNK 138          
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TWT2|A0A0L9TWT2_PHAAN (SHSP domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g119300 PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 7.172e-59
Identity = 101/148 (68.24%), Postives = 112/148 (75.68%), Query Frame = 0
Query:    1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTK 148
            MFAK     + PFA+K SQ  VVSS P+KKL RLPHVF+K LELP  S  DV +EETP FFRFVASC     N GGVRA AIEILPGITKIVIKR+DG DV V GQ+ + S+ GV LWRFRLPP TQPE VTAVC+G KL+VTVPK K
Sbjct:    1 MFAK----TLKPFAEKPSQRGVVSSPPTKKLLRLPHVFSKILELPCSSSDDVFVEETPHFFRFVASC-----NAGGVRALAIEILPGITKIVIKRMDGSDVAVAGQR-QYSSLGVGLWRFRLPPGTQPEMVTAVCSGGKLMVTVPKNK 138          
The following BLAST results are available for this feature:
BLAST of rna-XM_004495234.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|3.984e-2941.89Symbols: HSP1 | heat shock protein 20-like protein... [more]
|5.681e-2944.19Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004495234.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XVR5|A0A1S2XVR5_CICAR1.170e-105100.00Uncharacterized protein LOC101506081 OS=Cicer arie... [more]
tr|A0A072VLB5|A0A072VLB5_MEDTR4.278e-8786.36Heat shock 22 kDa protein, putative OS=Medicago tr... [more]
tr|A0A392NF94|A0A392NF94_9FABA1.345e-8280.65SHSP domain-containing protein OS=Trifolium medium... [more]
tr|A0A2K3LLJ8|A0A2K3LLJ8_TRIPR2.350e-8280.65SHSP domain-containing protein OS=Trifolium praten... [more]
tr|A0A9D5A4I2|A0A9D5A4I2_PEA3.192e-8081.05SHSP domain-containing protein OS=Pisum sativum OX... [more]
tr|A0A2Z6PMG2|A0A2Z6PMG2_TRISU8.481e-7579.19DUF4283 domain-containing protein OS=Trifolium sub... [more]
tr|A0A8B8MJ26|A0A8B8MJ26_ABRPR1.717e-6973.20Uncharacterized protein LOC113873614 OS=Abrus prec... [more]
tr|A0A4D6N0Q1|A0A4D6N0Q1_VIGUN1.459e-6270.27HSP20 family protein OS=Vigna unguiculata OX=3917 ... [more]
tr|A0A1S3V458|A0A1S3V458_VIGRR3.647e-6068.92Uncharacterized protein LOC106771489 OS=Vigna radi... [more]
tr|A0A0L9TWT2|A0A0L9TWT2_PHAAN7.172e-5968.24SHSP domain-containing protein OS=Phaseolus angula... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR3387917.6 KDA CLASS II HEAT SHOCK PROTEIN-RELATEDcoord: 9..148
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 85..146
e-value: 7.49421E-5
score: 37.5337

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3; organism=Cicer arietinum; type=mRNA; length=453bp
ATGTTTGCTAAGAAGGTTACTGCCGCTGTAAACCCCTTCGCAAAGAAGCG
ATCTCAACACAGCGTCGTTTCATCAACACCTTCAAAGAAGCTATGGAGAC
TCCCACACGTGTTCGCTAAAACGCTCGAGCTTCCTTTTCCTTCAGACGCC
GACGTTTCGATCGAAGAAACGCCACAGTTTTTTCGATTTGTCGCGTCTTG
CTATAAGACGAACGTCAACGGCGGTGGTGTGCGCGCTCACGCAATCGAGA
TTCTTCCAGGGATTACTAAAATTGTGATCAAGAGAATTGACGGCGGTGAT
GTTACGGTGGTGGGTCAGAAGGATAGACGGTCTACTTATGGTGTTGATTT
ATGGCGTTTTCGACTTCCGCCGTGGACTCAGCCGGAGAGAGTAACCGCTG
TTTGTACCGGCTGGAAGCTGGTTGTGACTGTGCCGAAGACAAAAGGGAAC
TAA
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protein sequence of rna-XM_004495234.3_CaCDCfrontier-NCBI_v1

>rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=150bp
MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDA
DVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGD
VTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN
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mRNA from alignment at chr4:1982330..1983207+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3; organism=Cicer arietinum; type=mRNA; length=878bp; location=Sequence derived from: chr4:1982330..1983207+ (Cicer arietinum
AATCAAAATAATGTCCTCTTCAAGGGTAGTTTCGTCAAACCAACCAAAAC CACCTCTCTATATATCATCATCACCAAACAAACATTCtcataagaaaata aaacaaacccaCAAATTTGACACTTAACTCTTCAATCTTATCCCGAACCT TAACACAGACAAAAACACAAACACTTTAAGGGCATGTTTGCTAAGAAGGT TACTGCCGCTGTAAACCCCTTCGCAAAGAAGCGATCTCAACACAGCGtcg tttcatcaacaccttcaAAGAAGCTATGGAGACTCCCACACGTGTTCGCT AAAACGCTCGAGCTTCCTTTTCCTTCAGACGCCGACGTTTCGATCGAAGA AACGCCACAGTTTTTTCGATTTGTCGCGTCTTGCTATAAGACGAACGTCA ACGGCGGTGGTGTGCGCGCTCACGCAATCGAGATTCTTCCAGGGATTACT AAAATTGTGATCAAGAGAATTGACGGCGGTGATGTTACGGTGGTGGGTCA GAAGGATAGACGGTCTACTTATGGTGTTGATTTATGGCGTTTTCGACTTC CGCCGTGGACTCAGCCGGAGAGAGTAACCGCTGTTTGTACCGGCTGGAAG CTGGTTGTGACTGTGCCGAAGACAAAAGGGaactaattatatttcaatta tatggAAGGatgtcaataatattaatgGTTGATGTTATTTGtatatgtat aattaatttatatcatCAATCATTTCTTTTGACTTCTCATTTTAGAATAT GCAAATGACGAATATGCAAATCTTAGCTTAACTCTTAATGCCGTCGACAT TGGAAGTTTCGTGGTAATTTGAGTTTCAATCTAGAGGGAATATTAATCTT CTATTTATATGGAGTTTTTTTTTGCTTA
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Coding sequence (CDS) from alignment at chr4:1982330..1983207+

>rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3; organism=Cicer arietinum; type=CDS; length=453bp; location=Sequence derived from: chr4:1982330..1983207+ (Cicer arietinum
ATGTTTGCTAAGAAGGTTACTGCCGCTGTAAACCCCTTCGCAAAGAAGCG
ATCTCAACACAGCGtcgtttcatcaacaccttcaAAGAAGCTATGGAGAC
TCCCACACGTGTTCGCTAAAACGCTCGAGCTTCCTTTTCCTTCAGACGCC
GACGTTTCGATCGAAGAAACGCCACAGTTTTTTCGATTTGTCGCGTCTTG
CTATAAGACGAACGTCAACGGCGGTGGTGTGCGCGCTCACGCAATCGAGA
TTCTTCCAGGGATTACTAAAATTGTGATCAAGAGAATTGACGGCGGTGAT
GTTACGGTGGTGGGTCAGAAGGATAGACGGTCTACTTATGGTGTTGATTT
ATGGCGTTTTCGACTTCCGCCGTGGACTCAGCCGGAGAGAGTAACCGCTG
TTTGTACCGGCTGGAAGCTGGTTGTGACTGTGCCGAAGACAAAAGGGaac
taa
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