rna-XM_004495234.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004495234.3 vs. Araport11
Match: | (Symbols: HSP1 | heat shock protein 20-like protein 1 | chr4:8510983-8511441 FORWARD LENGTH=152) HSP 1 Score: 104.76 bits (260), Expect = 3.984e-29 Identity = 62/148 (41.89%), Postives = 91/148 (61.49%), Query Frame = 0 Query: 10 VNPFAKKRSQHSVV------SSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTG-WKLVVTVPKTKGN 150 ++P + + ++++ + P KKL RLPH+F++ LELP SDADV++EE+ FRFVA GGGVRA+ +EI PG+TKI++ R +G + + +D+WRFRLP T+PE VT C G +L+VTVPK + N Sbjct: 3 IHPLPRNENNNNLIHHARDPTREPGKKLRRLPHIFSRVLELPLKSDADVAVEESHDCFRFVAET--DGGGGGGVRAYMVEIHPGVTKILV-RTNGSSSLGLSLDE----LELDVWRFRLPESTRPELVTVDCDGDGELIVTVPKIEDN 143
BLAST of rna-XM_004495234.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:7977774-7978370 REVERSE LENGTH=198) HSP 1 Score: 105.531 bits (262), Expect = 5.681e-29 Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 0 Query: 19 QHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKT 147 H + P K L RLPH+F + LELP S+ADV++EE FRFVA G +RA+ +EI PGITKIV+ R +G + + +D+WRFRLP T+PE VT C L+VTVPK Sbjct: 49 HHHNPTREPGKNLRRLPHIFNRVLELPLRSEADVAVEERHDCFRFVAETVGLCNGDGEMRAYMVEIHPGITKIVV-RTNGSSSLGLSLDE----LELDVWRFRLPESTRPELVTVACVDGDLIVTVPKN 172
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XVR5|A0A1S2XVR5_CICAR (Uncharacterized protein LOC101506081 OS=Cicer arietinum OX=3827 GN=LOC101506081 PE=4 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 1.170e-105 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN Sbjct: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VLB5|A0A072VLB5_MEDTR (Heat shock 22 kDa protein, putative OS=Medicago truncatula OX=3880 GN=25484355 PE=4 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 4.278e-87 Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150 MFAKKVT VNPFAKKRSQH VVSSTP +KKLWRLPHVFAK LELPFPSDADVSIEET QFFRFVASC K N+ N GGVRAHAIEILPGITKIVIKRIDGGDV VVGQ++RRS+ GVDLWRFRLPPWTQPERVTAVCTG KLVVTVPK KGN Sbjct: 1 MFAKKVTN-VNPFAKKRSQHGVVSSTPNVNTKKLWRLPHVFAKMLELPFPSDADVSIEETSQFFRFVASCNKMNIFNAGGVRAHAIEILPGITKIVIKRIDGGDVAVVGQQERRSSLGVDLWRFRLPPWTQPERVTAVCTGGKLVVTVPKIKGN 153
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A392NF94|A0A392NF94_9FABA (SHSP domain-containing protein OS=Trifolium medium OX=97028 GN=A2U01_0019012 PE=4 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.345e-82 Identity = 125/155 (80.65%), Postives = 135/155 (87.10%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPS----KKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150 MFAKKVT VNPFAKKRSQH VVSSTP+ K+LWRLPHVFAK LELPFPSDAD+SIEETPQFFRFVA C K ++ N GGVRA AIEILPGITKIVIKR DGGDV V GQ+++RS+ GVDLWRFRLPPWTQPERVTAVC+G KLVVTVPK KGN Sbjct: 3 MFAKKVTT-VNPFAKKRSQHGVVSSTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMSIFNAGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLVVTVPKIKGN 156
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LLJ8|A0A2K3LLJ8_TRIPR (SHSP domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g035396 PE=4 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 2.350e-82 Identity = 125/155 (80.65%), Postives = 135/155 (87.10%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPS----KKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150 MFAKKVT VNPFAKKRSQH VVS+TP+ K+LWRLPHVFAK LELPFPSDAD+SIEETPQFFRFVA C K N+ N GGVRA AIEILPGITKIVIKR DGGDV V GQ+++RS+ GVDLWRFRLPPWTQPERVTAVC+G KLVVTVPK KGN Sbjct: 1 MFAKKVTT-VNPFAKKRSQHGVVSTTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMNIFNDGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLVVTVPKIKGN 154
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D5A4I2|A0A9D5A4I2_PEA (SHSP domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_061669 PE=4 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 3.192e-80 Identity = 124/153 (81.05%), Postives = 133/153 (86.93%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKG 149 MFAKK+T VNPFAKKRSQH VVSST +KKLWRLPHVFA+ LELPFPSDADVSIEET QFFRFVASC +TN+ N GGVRAHAIEILPGITKIV+KR DGGDV V GQK+R S++ VDLWRFRLPP TQPERVTAVCTG KLVVTVPK KG Sbjct: 1 MFAKKLTT-VNPFAKKRSQHVVVSSTSNANTKKLWRLPHVFARMLELPFPSDADVSIEETTQFFRFVASCNQTNIFNSGGVRAHAIEILPGITKIVVKRFDGGDVVVAGQKERGSSFSVDLWRFRLPPCTQPERVTAVCTGGKLVVTVPKIKG 152
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PMG2|A0A2Z6PMG2_TRISU (DUF4283 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_404510 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 8.481e-75 Identity = 118/149 (79.19%), Postives = 128/149 (85.91%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPS----KKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNV-NGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTV 144 MFAKKVT VNPFAKKRSQH VVSSTP+ K+LWRLPHVFAK LELPFPSDAD+SIEETPQFFRFVA C K N+ N GGVRA AIEILPGITKIVIKR DGGDV V GQ+++RS+ GVDLWRFRLPPWTQPERVTAVC+G KL V + Sbjct: 3 MFAKKVTT-VNPFAKKRSQHGVVSSTPNVNTKKQLWRLPHVFAKMLELPFPSDADISIEETPQFFRFVALCNKMNIFNAGGVRAQAIEILPGITKIVIKRFDGGDVAVAGQQEKRSSLGVDLWRFRLPPWTQPERVTAVCSGGKLSVLL 150
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MJ26|A0A8B8MJ26_ABRPR (Uncharacterized protein LOC113873614 OS=Abrus precatorius OX=3816 GN=LOC113873614 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 1.717e-69 Identity = 112/153 (73.20%), Postives = 121/153 (79.08%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTP---SKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTKGN 150 MF+KKV N F KKRSQH VVSSTP SKKL++LPHVFAK LELPF SDADV IEET QFFRFVAS N N GGVRAH IEILPGITKIVIKR+DGGDVTV G++ R +DLWRFRLP WTQPE VTAVC G KLVVTVPK++GN Sbjct: 1 MFSKKV----NLFIKKRSQHGVVSSTPCSNSKKLYKLPHVFAKMLELPFSSDADVLIEETAQFFRFVASFNMLNANAGGVRAHVIEILPGITKIVIKRMDGGDVTVAGKQQHR----LDLWRFRLPAWTQPEMVTAVCIGGKLVVTVPKSRGN 145
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N0Q1|A0A4D6N0Q1_VIGUN (HSP20 family protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1476 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.459e-62 Identity = 104/148 (70.27%), Postives = 115/148 (77.70%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTK 148 MFAK + PFA+KRSQ VVSS P+KKL RLPHVF+K LELP PSD DV +EETPQ FRFVASC N GGVRA AIEILPGITKIVIKR+DG DV V GQ+ + + GV LWRFRLPPWTQPE VTAVC+G KL+VTVPK K Sbjct: 1 MFAK----TLKPFAEKRSQRGVVSSAPTKKLLRLPHVFSKILELPCPSDDDVFVEETPQSFRFVASC-----NAGGVRALAIEILPGITKIVIKRMDGTDVAVAGQR-QYGSLGVGLWRFRLPPWTQPEMVTAVCSGGKLMVTVPKNK 138
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V458|A0A1S3V458_VIGRR (Uncharacterized protein LOC106771489 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771489 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 3.647e-60 Identity = 102/148 (68.92%), Postives = 113/148 (76.35%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTK 148 MFAK + PFA+KRSQ VVSS+P+KKL RLPHVF+K LELP S DV +EETP FFRFVA C N GGVRA AIEILPGITKIVIKR+DG DV V GQ+ + S+ GV LWRFRLPP TQPE VTAVC+G KLVVTVPK K Sbjct: 1 MFAK----TLKPFAEKRSQRGVVSSSPTKKLLRLPHVFSKILELPCSSSDDVFVEETPHFFRFVAPC-----NAGGVRALAIEILPGITKIVIKRMDGSDVAVAGQR-QYSSLGVGLWRFRLPPGTQPEMVTAVCSGGKLVVTVPKNK 138
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TWT2|A0A0L9TWT2_PHAAN (SHSP domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g119300 PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 7.172e-59 Identity = 101/148 (68.24%), Postives = 112/148 (75.68%), Query Frame = 0 Query: 1 MFAKKVTAAVNPFAKKRSQHSVVSSTPSKKLWRLPHVFAKTLELPFPSDADVSIEETPQFFRFVASCYKTNVNGGGVRAHAIEILPGITKIVIKRIDGGDVTVVGQKDRRSTYGVDLWRFRLPPWTQPERVTAVCTGWKLVVTVPKTK 148 MFAK + PFA+K SQ VVSS P+KKL RLPHVF+K LELP S DV +EETP FFRFVASC N GGVRA AIEILPGITKIVIKR+DG DV V GQ+ + S+ GV LWRFRLPP TQPE VTAVC+G KL+VTVPK K Sbjct: 1 MFAK----TLKPFAEKPSQRGVVSSPPTKKLLRLPHVFSKILELPCSSSDDVFVEETPHFFRFVASC-----NAGGVRALAIEILPGITKIVIKRMDGSDVAVAGQR-QYSSLGVGLWRFRLPPGTQPEMVTAVCSGGKLMVTVPKNK 138 The following BLAST results are available for this feature:
BLAST of rna-XM_004495234.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_004495234.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004495234.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3; organism=Cicer arietinum; type=mRNA; length=453bpback to top protein sequence of rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 >rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=150bpback to top mRNA from alignment at chr4:1982330..1983207+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3; organism=Cicer arietinum; type=mRNA; length=878bp; location=Sequence derived from: chr4:1982330..1983207+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:1982330..1983207+ >rna-XM_004495234.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004495234.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004495234.3; organism=Cicer arietinum; type=CDS; length=453bp; location=Sequence derived from: chr4:1982330..1983207+ (Cicer arietinumback to top |