rna-XM_004496314.1

Transcript Overview
Namerna-XM_004496314.1
Unique Namerna-XM_004496314.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length666
Product50S ribosomal protein L21, chloroplastic
References
External references for this mRNA
DatabaseAccession
GeneID101492532
GenBankXM_004496314.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:10745065..10747750 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL341Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0642Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0762Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL1024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0383Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0474Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR445Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cantifR231Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR311Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR240Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR353Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR262Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR238Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR254Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR238Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR266Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsR284Pisum sativum Cameor genome v1aPisum sativum
canpsR309Pisum sativum Cameor genome v1aPisum sativum
avjcanL019Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL310Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR212Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Cr_21041.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun07g207500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_007417Cajanus cajan Asha genome v1.0Cajanus cajan
Va02G061820.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.3g099520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014655586.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg41470.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat6g187560.1Pisum sativum Cameor genome v1aPisum sativum
LR48_mrnaVigan02g194500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_03957Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_04757Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.007G089400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat06G0506500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_10112.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_04311Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101492532gene-LOC101492532_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004496314.1-5exon-XM_004496314.1-5_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496314.1-4exon-XM_004496314.1-4_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496314.1-3exon-XM_004496314.1-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496314.1-2exon-XM_004496314.1-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496314.1-1exon-XM_004496314.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004496371.1cds-XP_004496371.1_CaCDCfrontier-NCBI_v1_5Cicer arietinumCDS
cds-XP_004496371.1cds-XP_004496371.1_CaCDCfrontier-NCBI_v1_4Cicer arietinumCDS
cds-XP_004496371.1cds-XP_004496371.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_004496371.1cds-XP_004496371.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004496371.1cds-XP_004496371.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004496314.1_CaCDCfrontier-NCBI_v1rna-XM_004496314.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004496314.1_CaCDCfrontier-NCBI_v1rna-XM_004496314.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_004496314.1 vs. Araport11
Match: | (Symbols: RPL21C, ASD | chloroplast ribosomal protein L21, ATPase-in-Seed-Development | chr1:13208777-13210246 FORWARD LENGTH=220)

HSP 1 Score: 179.874 bits (455), Expect = 1.167e-56
Identity = 111/231 (48.05%), Postives = 150/231 (64.94%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISL---------TSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDY---PKVTMDDINL 219
            MASS+ATLS LC++F  HC+++           SK   ++++P +  F  PS  S+   +F         + PK  +S V A    +++ ++   S  +++ +     + +FAV+M+GGRQYIV PGR+L  QRLK ANV+D+I L+KVLLVGT T  YIGKPVVTNA V+A VE QGL+DKV+VFKYK KK YRR IGHRQPNTRIRI  I GYE+Y   P V + ++NL
Sbjct:    1 MASSSATLS-LCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTG-FLSPSTASTSRTAFT--------VAPKFAESVVEAEPETTDIEAVVV-SDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPASPNVAVGEVNL 220
[Close]
BLAST of rna-XM_004496314.1 vs. Araport11
Match: | (Symbols: NFD1 | NUCLEAR FUSION DEFECTIVE 1 | chr4:15050170-15051630 REVERSE LENGTH=270)

HSP 1 Score: 92.4337 bits (228), Expect = 1.885e-22
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYED-YPKV 212
            +FA+V IG  Q+ V  G  +  ++LK  ++NDK+ L KVLL+G+ +   IG+P++ +A V+A VEE  LD+KV++FK KR+K+YRRT GHRQ  T++RI  I G E   PK+
Sbjct:  140 VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIEKPEPKI 251
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|P51412|RK21_ARATH (Large ribosomal subunit protein bL21c OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.116e-55
Identity = 111/231 (48.05%), Postives = 150/231 (64.94%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISL---------TSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDY---PKVTMDDINL 219
            MASS+ATLS LC++F  HC+++           SK   ++++P +  F  PS  S+   +F         + PK  +S V A    +++ ++   S  +++ +     + +FAV+M+GGRQYIV PGR+L  QRLK ANV+D+I L+KVLLVGT T  YIGKPVVTNA V+A VE QGL+DKV+VFKYK KK YRR IGHRQPNTRIRI  I GYE+Y   P V + ++NL
Sbjct:    1 MASSSATLS-LCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTG-FLSPSTASTSRTAFT--------VAPKFAESVVEAEPETTDIEAVVV-SDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPASPNVAVGEVNL 220
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|P24613|RK21_SPIOL (Large ribosomal subunit protein bL21c OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.012e-46
Identity = 110/238 (46.22%), Postives = 138/238 (57.98%), Query Frame = 0 
Query:    1 MASSTATLS--TLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRL--LPKSTDSTVA----APESESELSSLQTDS----QP-----TQIVQSPTWEKG-------LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTM 214
            MAS+T   S  +LCA+     +++        +S+PFS      S  S   LS     + R R   +P+   +        P  + +LS +  D     +P       I+     +KG       +FAVV+IG RQYIV PGRW+  QRLKGA VNDKI L+KVLLVGT  S YIG P+VTNA V+A VEEQ LDDKVIVFKYK+KK+YRR IGHRQP TRI+I  I GYEDYP  T+
Sbjct:    1 MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVV---SPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTL 235
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|B8E0B4|RL21_DICTD (Large ribosomal subunit protein bL21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=rplU PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.907e-25
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIM 204
            +F VV  GG+QY V  G  + V++LK ANV D++ L KVLLVG +    IG+P V  A V A V  Q    KVIVFK+KRKKHYRR  GHRQP T++ I  I+
Sbjct:    1 MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVIAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEIV 102
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|B5YEQ3|RL21_DICT6 (Large ribosomal subunit protein bL21 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=rplU PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.786e-25
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIM 204
            +F VV  GG+QY +  G  + V++L+ ANV D++ L KVLLVG D    IG+P V  A V A V +Q    KVIVFK+KRKKHYRR  GHRQP T++ +  I+
Sbjct:    1 MFVVVETGGKQYKLSVGSTVRVEKLQ-ANVGDEVVLDKVLLVGKDDEVLIGQPYVEGAKVIAEVVKQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSVKEIV 102
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|A5N6J9|RL21_CLOK5 (Large ribosomal subunit protein bL21 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=rplU PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.516e-23
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 203
            ++AVV  GG+QY V  G  + V++L+ A V+  I L KVL++  D    +GKPVV  A V A V +QG   K+IVFKYK KK YR+  GHRQP T+++I  I
Sbjct:    1 MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVKAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|B9E018|RL21_CLOK1 (Large ribosomal subunit protein bL21 OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 GN=rplU PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.516e-23
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 203
            ++AVV  GG+QY V  G  + V++L+ A V+  I L KVL++  D    +GKPVV  A V A V +QG   K+IVFKYK KK YR+  GHRQP T+++I  I
Sbjct:    1 MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVKAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|A6LQR6|RL21_CLOB8 (Large ribosomal subunit protein bL21 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 GN=rplU PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.185e-22
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 203
            ++AV+  GG+QY V  G  + V++L  A+V+  + L++VL VGT+    +G PVV  A V A V  QG   KV+VFKYK KK YRR  GHRQP T++ I  I
Sbjct:    1 MYAVLATGGKQYRVQEGDVIYVEKLN-ADVDSTVELNEVLAVGTEEGIKVGAPVVEGAKVVAKVAAQGKAKKVVVFKYKSKKDYRRKNGHRQPYTKLVIEKI 101
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q2RL02|RL21_MOOTA (Large ribosomal subunit protein bL21 OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.542e-22
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 203
            ++A++M GG+QY V  G  L V++L  A V +K+ L KVL VG      +G P V  A V A+V+ Q    K+IVFKYK KK+YRR  GHRQP T+++I  I
Sbjct:    1 MYAIIMTGGKQYRVSEGDTLRVEKLP-AEVGEKVVLDKVLAVGEGADLKVGNPYVEGAKVTASVQAQDKAPKIIVFKYKPKKNYRRKQGHRQPYTQLQIEKI 101
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|C1FVW8|RL21_CLOBJ (Large ribosomal subunit protein bL21 OS=Clostridium botulinum (strain Kyoto / Type A2) OX=536232 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.125e-22
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTS-CYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 203
            ++AVV+ GG+QY V  G  L V++L  A+V+  + L  VLLVG D     +GKP+V  A V A V  QG   KV+VFKYK KK YR+  GHRQP T+I+I  I
Sbjct:    1 MYAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNEETVVGKPMVEGAKVTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQIEKI 102
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Match: sp|A5I669|RL21_CLOBH (Large ribosomal subunit protein bL21 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.218e-22
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 0 
Query:  102 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTS-CYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 203
            ++AVV+ GG+QY V  G  L V++L  A+V+  + L  VLLVG D     +GKP+V  A V A V  QG   KV+VFKYK KK YR+  GHRQP T+I+I  I
Sbjct:    1 MYAVVVTGGKQYKVAEGDILFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKVTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQIEKI 102
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y013|A0A1S2Y013_CICAR (50S ribosomal protein L21, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101492532 PE=3 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 1.862e-163
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 221
            MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES
Sbjct:    1 MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 221
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PG27|A0A2K3PG27_TRIPR (50S ribosomal protein chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g010924 PE=3 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.412e-122
Identity = 177/220 (80.45%), Postives = 192/220 (87.27%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISLTS-KTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRL--LPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDI 217
            MAS+TATLSTLC+SF THCSIS TS K+ FS+SQPFSS  P      SYNLSFQSTFS RL L  +PKST+S VA  ESES++S  Q +S+ T+I +S  WEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIG+P+VTNAVVYATVEEQGLD KVIVFKYKRKKHYRR IGHRQPNTRIRINSIMGYE+YPKVTMDDI
Sbjct:    1 MASATATLSTLCSSFSTHCSISQTSTKSHFSISQPFSSRLP----SQSYNLSFQSTFSQRLPLFPIPKSTESAVAEVESESQVSLAQPESESTEIGESRPWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGQPIVTNAVVYATVEEQGLDKKVIVFKYKRKKHYRRMIGHRQPNTRIRINSIMGYENYPKVTMDDI 216
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WEE1|A0A9D4WEE1_PEA (50S ribosomal protein L21, chloroplastic OS=Pisum sativum OX=3888 GN=KIW84_065065 PE=3 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 2.411e-119
Identity = 179/224 (79.91%), Postives = 190/224 (84.82%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISLTS-KTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLP--KSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 221
            MAS+TATLSTL +SF TH SIS TS KTQFS SQ F S         SYNLSFQSTFS R  LLP  KST+S+VAA ES+SE+S  Q DS  TQIV+S  WEKGLFAVVMIGGRQYIVHPGRWLVVQRLK A VNDKIALHKVLLVGTDTSCYIGKP+VTNAVVYATVE+QGLD KVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPK TMD+IN+ES
Sbjct:    1 MASATATLSTLSSSFQTHSSISQTSTKTQFSFSQRFPSQ--------SYNLSFQSTFSQRFPLLPIPKSTESSVAAVESDSEVSPTQPDSDSTQIVESRPWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKDAKVNDKIALHKVLLVGTDTSCYIGKPIVTNAVVYATVEDQGLDSKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKATMDNINVES 216
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VPH5|A0A072VPH5_MEDTR (50S ribosomal protein L21 OS=Medicago truncatula OX=3880 GN=25484971 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.813e-105
Identity = 181/225 (80.44%), Postives = 196/225 (87.11%), Query Frame = 0 
Query:    1 MASSTA-TLSTLCASFGTHCSISLTSKTQFSVS-QPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLP--KSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 221
            MAS+TA TLSTLC+SF THCSI    K  FS+S QPFSS FP      S+NLSFQSTFS RL LLP  KST+S+VA  +S+S++S  ++    +QIVQSP+WEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLD+KVIVFKYKRKK YRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES
Sbjct:    1 MASATASTLSTLCSSFTTHCSI----KPHFSISHQPFSSRFP------SHNLSFQSTFSQRLPLLPAPKSTESSVAPVDSDSQVSESES----SQIVQSPSWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDNKVIVFKYKRKKKYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 211
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|I3SSJ9|I3SSJ9_MEDTR (Ribosomal protein L21 OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 5.604e-105
Identity = 181/225 (80.44%), Postives = 195/225 (86.67%), Query Frame = 0 
Query:    1 MASSTA-TLSTLCASFGTHCSISLTSKTQFSVS-QPFSSSFPFPSHKSSYNLSFQSTFSPRLRLLP--KSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 221
            MAS+TA TLSTLC+SF THCSI    K  FS+S QPFSS FP      S NLSFQSTFS RL LLP  KST+S+VA  +S+S++S  ++    +QIVQSP+WEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLD+KVIVFKYKRKK YRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES
Sbjct:    1 MASATASTLSTLCSSFTTHCSI----KPHFSISHQPFSSRFP------SRNLSFQSTFSQRLPLLPAPKSTESSVAPVDSDSQVSESES----SQIVQSPSWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDNKVIVFKYKRKKKYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLES 211
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151U5X4|A0A151U5X4_CAJCA (50S ribosomal protein L21, chloroplastic OS=Cajanus cajan OX=3821 GN=KK1_007417 PE=3 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.224e-102
Identity = 164/224 (73.21%), Postives = 184/224 (82.14%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPRLRL--LPKSTDSTVAAPESESELSSLQTDSQPTQIV--QSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLE 220
            MA++T ++STLCA+FGTHC+IS   K+QFS  QPF+ +    SH  SYNL    TFSPRL L  LPKST+S VA  E+ S      TD +P QIV  Q P+WE GLFAVVM+G RQYIVHPGRW+VVQRLKGANVNDKIALHKVLLVGTDTSCYIGKP+VTNAVVYATVEEQGLD KVIVFKYK+KKHYRRTIGHRQPNTR+RINSIMGYE+YPKVTMDD+  E
Sbjct:    1 MATATVSISTLCATFGTHCAISHNPKSQFS--QPFNFNR-VSSH--SYNL----TFSPRLPLSPLPKSTESAVAQTETGS------TDPEPAQIVPAQPPSWEPGLFAVVMVGSRQYIVHPGRWIVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPIVTNAVVYATVEEQGLDPKVIVFKYKKKKHYRRTIGHRQPNTRLRINSIMGYENYPKVTMDDLKSE 209
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|I3SFQ7|I3SFQ7_LOTJA (50S ribosomal protein L21, chloroplastic OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 9.688e-99
Identity = 150/221 (67.87%), Postives = 171/221 (77.38%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQS-TFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLE 220
            MAS+TA +STLCASFGTHC+IS TSK  FS S    S+  FPSH  S  LS Q  TF+ R  LLP    S  A  E E ++++ Q ++      Q P+WE GLFAVVM+GGRQYIVHPGRW+VVQRLKGA  NDKIAL KVLLVGTDTSCYIGKP+V+NAVVYATVEEQG D KVIVFKYKRKK YRRT GH+QP+TR+RINSIMGYE+YPKVTMDD+  E
Sbjct:    1 MASATAIVSTLCASFGTHCTISSTSKPLFSQS----STSRFPSH--SNKLSLQPPTFTQRFPLLPLPKVSESAVAEPEIDVTTPQPEAGEIVPAQPPSWEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVVYATVEEQGFDPKVIVFKYKRKKQYRRTYGHKQPHTRLRINSIMGYENYPKVTMDDVKSE 215
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|I3SYT5|I3SYT5_LOTJA (50S ribosomal protein L21, chloroplastic OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.345e-98
Identity = 150/221 (67.87%), Postives = 171/221 (77.38%), Query Frame = 0 
Query:    1 MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQS-TFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLE 220
            MAS+TA +STLCASFGTHC+IS TSK  FS S    S   FPSH  S  LS Q  TF+ R  LLP    S  A  E E+++++ Q ++      Q P+WE GLFAVVM+GGRQYIVHPGRW+VVQRLKGA  NDKIAL KVLLVGTDTSCYIGKP+V+N VVYATVEEQG D KVIVFKYKRKKHYRRT GH+QP+TR+RINSIMGYE+YPKVTMDD+  E
Sbjct:    1 MASATAIVSTLCASFGTHCTISSTSKPLFSQS----SHSRFPSH--SNKLSLQPPTFTLRFPLLPFPKVSESAVAELETDVTTPQPEAGEIVPAQPPSWEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNTVVYATVEEQGFDPKVIVFKYKRKKHYRRTYGHKQPHTRLRINSIMGYENYPKVTMDDVKSE 215
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|V7BGS1|V7BGS1_PHAVU (50S ribosomal protein L21, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G089400g PE=3 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.269e-98
Identity = 163/224 (72.77%), Postives = 184/224 (82.14%), Query Frame = 0 
Query:    4 STATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPR--LRLLPKSTDSTVAAPESESELSSLQTDSQPTQIV--QSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDI--NLES 221
            +TAT+STLCA+FGTHC+IS   K  FS  QPF+ +  FPSH  SYNL    TFSPR  L  LPKS++S VA  E+E+      T+ +P QIV  + P+WE GLFAVVMIG RQYIVHPGR LVVQRL GANVNDKIALHKVLLVGTDTSCYIGKP+VT+AVVYATVEEQGLDDKVIVFKYK+KKHYRRTIGHRQP+TR+RINSIMGYE+YPKVTMDDI  +LES
Sbjct:    2 ATATVSTLCATFGTHCTISHNPKPLFS--QPFNLNR-FPSH--SYNL----TFSPRSPLASLPKSSESAVAQTEAETG----STEPEPVQIVPAKPPSWEPGLFAVVMIGSRQYIVHPGRKLVVQRLSGANVNDKIALHKVLLVGTDTSCYIGKPIVTDAVVYATVEEQGLDDKVIVFKYKKKKHYRRTIGHRQPHTRLRINSIMGYENYPKVTMDDIKEDLES 212
[Close]
BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N2H4|A0A4D6N2H4_VIGUN (Large subunit ribosomal protein L21 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3024 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.794e-97
Identity = 158/218 (72.48%), Postives = 181/218 (83.03%), Query Frame = 0 
Query:    4 STATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNLSFQSTFSPR--LRLLPKSTDSTVAAPESESELSSLQTDSQPTQIV--QSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDI 217
            +TAT+STLCA+FGTHC+IS   K  FS  QPF+ +  FPSH  SYNL    TFSPR  L  LPKS++S+VA  E+E+      T+ +PTQIV  ++P+WE GLFAV+M+G RQYIVHPGR LVVQRL GANVNDKIALHKVLLVGTDTSCYIG+P+VTNAVVYATVEEQGLD KVIVFKYK+KKHYRR IGHRQP+TRIRINSIMGYE+YPKVTMDDI
Sbjct:    2 ATATVSTLCATFGTHCTISHNPKPLFS--QPFNLNR-FPSH--SYNL----TFSPRSPLAPLPKSSESSVAQTETETG----STEPEPTQIVSAKAPSWEPGLFAVIMVGSRQYIVHPGRKLVVQRLAGANVNDKIALHKVLLVGTDTSCYIGRPIVTNAVVYATVEEQGLDPKVIVFKYKKKKHYRRNIGHRQPHTRIRINSIMGYENYPKVTMDDI 206
The following BLAST results are available for this feature:
BLAST of rna-XM_004496314.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|1.167e-5648.05Symbols: RPL21C, ASD | chloroplast ribosomal prote... [more]
|1.885e-2247.32Symbols: NFD1 | NUCLEAR FUSION DEFECTIVE 1 | chr4:... [more]
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BLAST of rna-XM_004496314.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|P51412|RK21_ARATH1.116e-5548.05Large ribosomal subunit protein bL21c OS=Arabidops... [more]
sp|P24613|RK21_SPIOL3.012e-4646.22Large ribosomal subunit protein bL21c OS=Spinacia ... [more]
sp|B8E0B4|RL21_DICTD4.907e-2552.43Large ribosomal subunit protein bL21 OS=Dictyoglom... [more]
sp|B5YEQ3|RL21_DICT67.786e-2550.49Large ribosomal subunit protein bL21 OS=Dictyoglom... [more]
sp|A5N6J9|RL21_CLOK51.516e-2348.04Large ribosomal subunit protein bL21 OS=Clostridiu... [more]
sp|B9E018|RL21_CLOK11.516e-2348.04Large ribosomal subunit protein bL21 OS=Clostridiu... [more]
sp|A6LQR6|RL21_CLOB81.185e-2247.06Large ribosomal subunit protein bL21 OS=Clostridiu... [more]
sp|Q2RL02|RL21_MOOTA1.542e-2247.06Large ribosomal subunit protein bL21 OS=Moorella t... [more]
sp|C1FVW8|RL21_CLOBJ2.125e-2249.51Large ribosomal subunit protein bL21 OS=Clostridiu... [more]
sp|A5I669|RL21_CLOBH2.218e-2249.51Large ribosomal subunit protein bL21 OS=Clostridiu... [more]
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BLAST of rna-XM_004496314.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Y013|A0A1S2Y013_CICAR1.862e-163100.0050S ribosomal protein L21, chloroplastic OS=Cicer ... [more]
tr|A0A2K3PG27|A0A2K3PG27_TRIPR1.412e-12280.4550S ribosomal protein chloroplastic-like OS=Trifol... [more]
tr|A0A9D4WEE1|A0A9D4WEE1_PEA2.411e-11979.9150S ribosomal protein L21, chloroplastic OS=Pisum ... [more]
tr|A0A072VPH5|A0A072VPH5_MEDTR1.813e-10580.4450S ribosomal protein L21 OS=Medicago truncatula O... [more]
tr|I3SSJ9|I3SSJ9_MEDTR5.604e-10580.44Ribosomal protein L21 OS=Medicago truncatula OX=38... [more]
tr|A0A151U5X4|A0A151U5X4_CAJCA4.224e-10273.2150S ribosomal protein L21, chloroplastic OS=Cajanu... [more]
tr|I3SFQ7|I3SFQ7_LOTJA9.688e-9967.8750S ribosomal protein L21, chloroplastic OS=Lotus ... [more]
tr|I3SYT5|I3SYT5_LOTJA1.345e-9867.8750S ribosomal protein L21, chloroplastic OS=Lotus ... [more]
tr|V7BGS1|V7BGS1_PHAVU4.269e-9872.7750S ribosomal protein L21, chloroplastic OS=Phaseo... [more]
tr|A0A4D6N2H4|A0A4D6N2H4_VIGUN1.794e-9772.48Large subunit ribosomal protein L21 OS=Vigna ungui... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028909Large ribosomal subunit protein bL21-likePFAMPF00829Ribosomal_L21pcoord: 103..203
e-value: 5.5E-29
score: 111.6
IPR001787Large ribosomal subunit protein bL21NCBIFAMTIGR00061L21coord: 103..203
e-value: 7.6E-25
score: 98.5
IPR001787Large ribosomal subunit protein bL21HAMAPMF_01363Ribosomal_L21coord: 102..205
score: 23.188438
NoneNo IPR availablePANTHERPTHR2134950S RIBOSOMAL PROTEIN L21coord: 18..207
IPR036164Large ribosomal subunit protein bL21-like superfamilySUPERFAMILY141091L21p-likecoord: 102..203

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004496314.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496314.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496314.1; organism=Cicer arietinum; type=mRNA; length=666bp
ATGGCTTCTTCAACTGCAACTCTTTCCACTCTATGCGCTTCTTTCGGAAC
CCATTGCTCAATTTCCCTAACCTCCAAAACCCAATTCTCTGTTTCTCAAC
CTTTCTCCTCTTCTTTTCCTTTTCCTTCTCATAAATCATCTTACAACCTC
TCTTTTCAATCCACTTTCTCACCGCGCTTACGTCTTCTGCCCAAATCCAC
TGACTCTACAGTGGCAGCACCTGAGTCTGAGTCTGAACTGTCTTCGCTGC
AGACCGACTCTCAACCCACTCAAATTGTCCAATCTCCTACGTGGGAGAAG
GGTCTTTTTGCAGTTGTAATGATTGGTGGACGACAATATATTGTTCACCC
CGGGCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCTAATGTTAACGACA
AGATTGCGCTGCATAAGGTTTTACTAGTTGGCACAGATACATCCTGCTAC
ATTGGGAAACCAGTAGTAACAAATGCCGTGGTATATGCAACAGTGGAAGA
GCAGGGTTTAGATGACAAAGTGATTGTATTCAAGTACAAAAGAAAGAAAC
ACTATCGCAGAACAATTGGACACAGACAGCCAAACACACGCATCCGGATA
AATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGACAT
CAATTTGGAATCATGA
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protein sequence of rna-XM_004496314.1_CaCDCfrontier-NCBI_v1

>rna-XM_004496314.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496314.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496314.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=221bp
MASSTATLSTLCASFGTHCSISLTSKTQFSVSQPFSSSFPFPSHKSSYNL
SFQSTFSPRLRLLPKSTDSTVAAPESESELSSLQTDSQPTQIVQSPTWEK
GLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCY
IGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRI
NSIMGYEDYPKVTMDDINLES
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mRNA from alignment at chr4:10745065..10747750-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004496314.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496314.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496314.1; organism=Cicer arietinum; type=mRNA; length=2686bp; location=Sequence derived from: chr4:10745065..10747750- (Cicer arietinum
ATGGATAGGAAGAAGGAGAAAAGAAAGAGAAGATAAAGCTGTGTGAGAGA
GAGAGAGAGAGAGAGGAAGTTCTCTCCTATCTCGAAATTCCAAAATGGCT
TCTTCAACTGCAACTCTTTCCACTCTATGCGCTTCTTTCGGAACCCATTG
CTCAATTTCCCTAACCTCCAAAACCCAATTCTCTGTTTCTCAACCTTTCT
CCTCTTCTTTTCCTTTTCCTTCTCATAAATCATCTTACAACCTCTCTTTT
CAATCCACTTTCTCACCGCGCTTACGTCTTCTGCCCAAATCCACTGACTC
TACAGTGGCAGCACCTGAGTCTGAGTCTGAACTGTCTTCGCTGCAGACCG
ACTCTCAACCCACTCAAATTGTCCAATCTCCTACGTGGGAGAAGGGTCTT
TTTGCAGTTGTAATGGTGAGTTTTCTGTAGCTTTTTCCAATGTTGGCTGT
GGATAGGGTCACCCTTTTGTTTTAATTGTTGAAAAGTTGTAGTCTTTGTG
TATAATGATGAGTTTGCATGTTTGTGGCTACCCATTTGGTTTAATCTGTT
TACAATTTATCTGAAACTGTTGTTTGTGTTTGTGCTATTGGTAAGTAGTA
ATGCAAGGTTTGAGTAATTTGTTTGTTTGCTGATTATGATTATTTTAAGG
GTGAACCCCATGTCTTTTCTTAGTGATTGTATGATTGCACATGTACTTGC
AAATTGTGGAATTTGCCTCCTTCAAGTGAACAATTTGCTTTATATTGTGT
AAAATAAGTAATTTCAACAGTTGATAAGAAAGTTGACGGTTCAATACATT
TGTGATTGTTATGTATGTGAATGTAAGATTATTCATTGATTTTTCATGAA
AAATTGAAATTATTTAGTTTACACTCGAACAAATTGCTCACTTTAGAGGA
GCAAATTACAAAAAGTAGCAATGCTTGATGAAAACGGTTAATCTGGATAA
TTTTAACTGTTGTTTATGTTGTTGGGCTATATGTTACCCTCCCAATTTGT
TGGGTCGGTAAATAGGTACTTGTTTTTGTTCTGGGGTCTCTGCAAATTTG
TGTCTTCTATTCTTGTGCTTTTTAACATTTTCTTTTGTTGCTTTGTTTAG
ATTGGTGGACGACAATATATTGTTCACCCCGGGCGCTGGCTTGTTGTTCA
GAGGCTCAAAGGTGCTAATGTTAACGACAAGGTACACATCTTGTCTGTTC
TTAATTTCTGCAATTTGACATGTTGCAGTTCTTATTCATTTTCAGTCTTC
TAGCCATAGCTGTGGACCATTCATTAAATATTTCTATTTATATGTGATTG
TTATTGTCACCAACTTATTATCACCATTTTCTCCCTAAACATGCTTCTAA
AATGGCTACCATTTGAATGTGATGGAGGCTTAGAATTATAATTAATGAAA
TACCAGTACGGTGTTTATGTAAGTGTGAACAAGCACACAACTTAGAGTGT
GTAATCTTTTCGGGGGAAAATACAGTATTCCATTTTATGGTGTAATTGGT
TGTCACAAGAAAACATATCTGAGACAGTTATCTGTTGGTTTATTATATCA
AACTTTTATCTCTCCCAGAAACCTTGATACAAAATGTTTTTGAGGTGGAG
AGTGAATTTGTTAAGTTGAATATTTTCCGTTACTTTCAAAGCTTTTGTCA
ATTTACATTAATTTTAGCTCTTCTGAACTGTAGATTGCGCTGCATAAGGT
TTTACTAGTTGGCACAGATACATCCTGCTACATTGGGAAACCAGTAGTAA
CAAATGCCGTGGTATATGCAACAGTGGAAGAGCAGGTACACTTATTTCTC
TCTTGTTCTGTTCTCCTGGTAGGAAGCTAAACGAAAAATACCTCTTCCAC
ATTAACCGTTATGTTTTTAATGCAGGGTTTAGATGACAAAGTGATTGTAT
TCAAGTACAAAAGAAAGAAACACTATCGCAGAACAATTGGACACAGACAG
GTGCTGTCCTTTTACTTTGCAATCTAATTATTTATCAAAATCTATTGCGA
TTAACATGTCTATATGTCACTTCGGAATTTATTCACAGGGACAAATTTTT
GTACCCTCTAATTTCTGAAAGGAGCTTAGAAATATGTGAATCCGTGTTGT
GTATATCAATGTTTGCCTGTGTTCTTGGCAAAAAATAAGTCATTATTTAT
ATTTGTTAAAATGAGCAGTAATGCATACATGAAAATTTTAAATGCATGTG
TTCCAACTTCCAAGGAACATATAGAAGCAAAATAGAAAATTTTGGTCATC
TTCAATTTTTTCCTTTCTAAGGTGCCTATAATCACATCTCGGATGGTTTA
CCTATTCGACTGCGTGTCCAAGATATTACTGTGCCTAACGTTATGCAGAT
TAACTTAATTCAATTATTTATCAGAATTTGATGTTTTATTTGGTTTACAA
CTCGTGACAGCCAAACACACGCATCCGGATAAATAGCATTATGGGCTATG
AGGACTACCCAAAAGTTACTATGGACGACATCAATTTGGAATCATGAAAA
TTTAGTGCACTATGCTAGTATTGTATCTTCTTTCATCCATAATTATTAGC
AATCATTTTACCATGGTTAGTTTGGCTTGTATCAGGAATGGATTTGTTTG
AATGTTTATGTAAGTTGTTAACTAACTATTGTATGGCATATTGTAATCTT
TTGTTTCTAAATGCATTGCTATATTCCTGTCTCCAA
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Coding sequence (CDS) from alignment at chr4:10745065..10747750-

>rna-XM_004496314.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496314.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496314.1; organism=Cicer arietinum; type=CDS; length=666bp; location=Sequence derived from: chr4:10745065..10747750- (Cicer arietinum
ATGGCTTCTTCAACTGCAACTCTTTCCACTCTATGCGCTTCTTTCGGAAC
CCATTGCTCAATTTCCCTAACCTCCAAAACCCAATTCTCTGTTTCTCAAC
CTTTCTCCTCTTCTTTTCCTTTTCCTTCTCATAAATCATCTTACAACCTC
TCTTTTCAATCCACTTTCTCACCGCGCTTACGTCTTCTGCCCAAATCCAC
TGACTCTACAGTGGCAGCACCTGAGTCTGAGTCTGAACTGTCTTCGCTGC
AGACCGACTCTCAACCCACTCAAATTGTCCAATCTCCTACGTGGGAGAAG
GGTCTTTTTGCAGTTGTAATGATTGGTGGACGACAATATATTGTTCACCC
CGGGCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCTAATGTTAACGACA
AGATTGCGCTGCATAAGGTTTTACTAGTTGGCACAGATACATCCTGCTAC
ATTGGGAAACCAGTAGTAACAAATGCCGTGGTATATGCAACAGTGGAAGA
GCAGGGTTTAGATGACAAAGTGATTGTATTCAAGTACAAAAGAAAGAAAC
ACTATCGCAGAACAATTGGACACAGACAGCCAAACACACGCATCCGGATA
AATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGACAT
CAATTTGGAATCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR028909bL21-like
IPR001787Ribosomal_bL21
IPR036164bL21-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome