rna-XM_004496390.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XZN6|A0A1S2XZN6_CICAR (Uncharacterized protein LOC101515541 OS=Cicer arietinum OX=3827 GN=LOC101515541 PE=4 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 2.564e-123 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQSANAKGHGGGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQLSSN 174 MNSSTICSLFLGLILISQSANAKGHGGGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQLSSN Sbjct: 1 MNSSTICSLFLGLILISQSANAKGHGGGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQLSSN 174
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WDS4|A0A9D4WDS4_PEA (Pectinesterase inhibitor domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_065162 PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 7.076e-70 Identity = 109/176 (61.93%), Postives = 131/176 (74.43%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQ---SANAKGHG--GGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSST CS+FLGLILISQ +ANA+ HG G L+ +C +++ A C ILGSN + KS+ +L+K VLE A +A GQ+FLKGLA PALTQCA+FDYDGAVMSFKSA+ EL +DPQTANYDAKVAGDGP+QCDRG+A+ +VNPEVTALN I SE AFL T+ L Sbjct: 30 MNSSTFCSVFLGLILISQYPFAANARSHGLKGSLITIVCGASSNVAECNKILGSNPHAAEMKSYRELAKVVLEMALEKASAGQSFLKGLAAETKSPALTQCANFDYDGAVMSFKSAIGELKKDPQTANYDAKVAGDGPAQCDRGMAAGHVVNPEVTALNSLITFFSELAFLVTNYL 205
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WC62|A0A9D4WC62_PEA (Pectinesterase inhibitor domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_065161 PE=4 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.264e-69 Identity = 108/176 (61.36%), Postives = 130/176 (73.86%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQ---SANAKGHG--GGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSST CS+FLGLILISQ +ANA+ HG G L+ +C +++ A C ILGSN + KS+ +L+K VLE A +A GQ+FLKGLA PALTQCA+FDYDG VMSFKS+L EL +DPQTANYDAKVAGDGP+QCDRG+A+ +VNPEVTALN I SE AFL T+ L Sbjct: 27 MNSSTFCSVFLGLILISQYPFAANARSHGLKGSLITIVCGASSNMAECNKILGSNPHAAEVKSYRELAKVVLEMALEKASAGQSFLKGLAAETKSPALTQCANFDYDGVVMSFKSSLGELKKDPQTANYDAKVAGDGPAQCDRGMAAGHVVNPEVTALNSLITFFSELAFLVTNYL 202
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WDJ8|A0A9D4WDJ8_PEA (Pectinesterase inhibitor domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_065160 PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.683e-69 Identity = 108/176 (61.36%), Postives = 131/176 (74.43%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQ---SANAKGHG--GGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 M +STICS+FLGLILISQ +ANA+ G GL+ +C ++D A C +ILGSN + + AKSF QL+K VLE AY++A GQ+FLK LA PAL QCA+FDYDG VMSFKS+L EL EDPQTANYDAKVA DG +QCDRG+A+ +VNPEVT LN QI SE AFL T++L Sbjct: 1 MKTSTICSVFLGLILISQYPFAANARSVGLRSGLIPVVCSASSDNAQCNSILGSNPQAAQAKSFPQLAKAVLEMAYDKAAAGQSFLKALAAETKSPALIQCANFDYDGVVMSFKSSLDELKEDPQTANYDAKVASDGTAQCDRGMAAGHVVNPEVTTLNSQITFYSELAFLVTNKL 176
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WC63|A0A9D4WC63_PEA (Pectinesterase inhibitor domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_065161 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.100e-68 Identity = 107/176 (60.80%), Postives = 129/176 (73.30%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQ---SANAKGHG--GGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSST CS+FLGLILISQ +ANA+ HG G L+ +C +++ A C ILGSN + KS+ +L+K VLE A +A GQ+FLKGLA PALTQCA+FDYDG VMSFKS+L EL +DPQTANYDAKVA DGP+QCDRG+A+ +VNPEVTALN I SE AFL T+ L Sbjct: 27 MNSSTFCSVFLGLILISQYPFAANARSHGLKGSLITIVCGASSNMAECNKILGSNPHAAEVKSYRELAKVVLEMALEKASAGQSFLKGLAAETKSPALTQCANFDYDGVVMSFKSSLGELKKDPQTANYDAKVASDGPAQCDRGMAAGHVVNPEVTALNSLIAFYSELAFLVTNYL 202
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WE96|A0A9D4WE96_PEA (Pectinesterase inhibitor domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_065161 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 4.606e-68 Identity = 109/176 (61.93%), Postives = 131/176 (74.43%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQ---SANAKGHG--GGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSST CS+FLGLILISQ +ANA+ HG G L+ +C +++ A C ILGSN + KS+ +L+K VLE A +A GQ+FLKGLA PALTQCA+FDYDGAVMSFKSA+ EL +DPQTANYDAKVAGDGP+QCDRG+A+ +VNPEVTALN I SE AFL T+ L Sbjct: 109 MNSSTFCSVFLGLILISQYPFAANARSHGLKGSLITIVCGASSNVAECNKILGSNPHAAEMKSYRELAKVVLEMALEKASAGQSFLKGLAAETKSPALTQCANFDYDGAVMSFKSAIGELKKDPQTANYDAKVAGDGPAQCDRGMAAGHVVNPEVTALNSLITFFSELAFLVTNYL 284
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|G7IBW8|G7IBW8_MEDTR (Plant invertase/pectin methylesterase inhibitor protein OS=Medicago truncatula OX=3880 GN=11416334 PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.158e-56 Identity = 104/181 (57.46%), Postives = 125/181 (69.06%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQS---ANAK-------GHGGGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSSTICSLFLGLILISQS ANA+ G G LV +C ++++ C +L S+ +I+ AK++ QLSK V+E A +AVEGQ FLKGLAQ N P L CA F YDG V SFKS L E+TEDPQTA+YD V GDGP+QCDR +A A IVNP +TALN+QIL LS A A +L Sbjct: 1 MNSSTICSLFLGLILISQSPFAANARVLGLGGGGGRGPLVSLLCAASSNKVECNKVL-SSPQITQAKNYKQLSKAVIEMALKKAVEGQAFLKGLAQKN--PKLETCAGFAYDGVVGSFKSCLGEITEDPQTASYDCGVVGDGPTQCDRIMADAHIVNPAITALNKQILFLSSLASRAVDKL 178
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A396K099|A0A396K099_MEDTR (Putative pectinesterase inhibitor domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0201641 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 8.792e-56 Identity = 104/181 (57.46%), Postives = 125/181 (69.06%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQS---ANAK-------GHGGGLVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSSTICSLFLGLILISQS ANA+ G G LV +C ++++ C +L S+ +I+ AK++ QLSK V+E A +AVEGQ FLKGLAQ N P L CA F YDG V SFKS L E+TEDPQTA+YD V GDGP+QCDR +A A IVNP +TALN+QIL LS A A +L Sbjct: 20 MNSSTICSLFLGLILISQSPFAANARVLGLGGGGGRGPLVSLLCAASSNKVECNKVL-SSPQITQAKNYKQLSKAVIEMALKKAVEGQAFLKGLAQKN--PKLETCAGFAYDGVVGSFKSCLGEITEDPQTASYDCGVVGDGPTQCDRIMADAHIVNPAITALNKQILFLSSLASRAVDKL 197
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|G7IBU9|G7IBU9_MEDTR (Plant invertase/pectin methylesterase inhibitor protein OS=Medicago truncatula OX=3880 GN=11408541 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.839e-54 Identity = 102/179 (56.98%), Postives = 123/179 (68.72%), Query Frame = 0 Query: 1 MNSSTICSLFLGLILISQS---ANAKGHGGG-----LVVTICKGATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLATSQL 171 MNSSTICS+FLGLILISQS +NA+ G G LV IC ++++ C N+L S+ +I+ AK QLS V+E A ++VEGQ FLKGLAQ N P L CA F YDG V SFKS L E+TEDPQTA+YD KVA DGP+QCDR +A IVNP +TALN+QI LSE A A +L Sbjct: 1 MNSSTICSMFLGLILISQSPFASNARLLGLGGGGGPLVSLICAASSNKVECSNVL-SSPQIAQAKDNKQLSIAVVEIAIKKSVEGQAFLKGLAQKN--PKLETCAGFAYDGVVGSFKSCLGEITEDPQTASYDCKVAVDGPTQCDRVMADEHIVNPAITALNKQIAFLSELASKAVDKL 176
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4BSH3|A0A6P4BSH3_ARADU (Uncharacterized protein LOC107467748 OS=Arachis duranensis OX=130453 GN=LOC107467748 PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.530e-53 Identity = 97/177 (54.80%), Postives = 117/177 (66.10%), Query Frame = 0 Query: 1 MNSSTICSLF--LGLILI------SQSANAKGHGGGLVVTICKG-ATDRAACENILGSNSEISHAKSFSQLSKEVLEFAYNQAVEGQNFLKGLAQANNCPALTQCAHFDYDGAVMSFKSALAELTEDPQTANYDAKVAGDGPSQCDRGLASAQIVNPEVTALNRQILLLSEFAFLAT 168 MNSST S++ LGLILI ++ +A LV+ +C AT+RA C +I+ SN ++ AK+ QLS+ +LE ++ EGQ FLK LA+ PAL QCA FDYDG V SFKSAL E+ EDP TANYDAKVA DGP CDRGLAS IVNP VT LN+QI LLS AF AT Sbjct: 1 MNSSTKSSIWFSLGLILIIANVAQAEEKSATLDLSKLVIKVCDATATERAKCMDIMRSNPKMLSAKNIVQLSQAILELGVSKGKEGQKFLKELAKKTKSPALEQCAGFDYDGVVGSFKSALGEIKEDPMTANYDAKVASDGPDTCDRGLASENIVNPAVTELNKQIRLLSGIAFAAT 177 The following BLAST results are available for this feature:
BLAST of rna-XM_004496390.3 vs.
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 0
BLAST of rna-XM_004496390.3 vs.
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004496390.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004496390.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496390.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496390.3; organism=Cicer arietinum; type=mRNA; length=525bpback to top protein sequence of rna-XM_004496390.3_CaCDCfrontier-NCBI_v1 >rna-XM_004496390.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496390.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496390.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=174bpback to top mRNA from alignment at chr4:11348971..11349730+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004496390.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496390.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496390.3; organism=Cicer arietinum; type=mRNA; length=760bp; location=Sequence derived from: chr4:11348971..11349730+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:11348971..11349730+ >rna-XM_004496390.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496390.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496390.3; organism=Cicer arietinum; type=CDS; length=525bp; location=Sequence derived from: chr4:11348971..11349730+ (Cicer arietinumback to top |