rna-XM_004496399.2

Transcript Overview
Namerna-XM_004496399.2
Unique Namerna-XM_004496399.2_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length702
Productuncharacterized LOC101490484
References
External references for this mRNA
DatabaseAccession
GeneID101490484
GenBankXM_004496399.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:11406147..11408312 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascanL245Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL249Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL341Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0642Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0762Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0963Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL1024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0391Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0415Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR321Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR388Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR455Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR246Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR210Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR219Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR231Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR311Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR240Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR320Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canpvR353Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR254Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR262Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR199Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR238Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR254Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR238Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR266Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsR284Pisum sativum Cameor genome v1aPisum sativum
avjcanL018Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL023Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL310Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR212Cicer arietinum
cancarR278Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Va10G029580.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.3g103160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr07.711Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va02G063020.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan10g145100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_027625Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_08071.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun04g129700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg41358.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan02g202000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.3g128080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat6g192320.1Pisum sativum Cameor genome v1aPisum sativum
Psat06G0517000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.007G081100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014651831.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun07g216000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr04.1274Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014658694.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_04374Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_10212.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101490484gene-LOC101490484_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004496399.2-4exon-XM_004496399.2-4_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496399.2-3exon-XM_004496399.2-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496399.2-2exon-XM_004496399.2-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496399.2-1exon-XM_004496399.2-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004496456.1cds-XP_004496456.1_CaCDCfrontier-NCBI_v1_4Cicer arietinumCDS
cds-XP_004496456.1cds-XP_004496456.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_004496456.1cds-XP_004496456.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004496456.1cds-XP_004496456.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004496399.2_CaCDCfrontier-NCBI_v1rna-XM_004496399.2_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004496399.2_CaCDCfrontier-NCBI_v1rna-XM_004496399.2_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
BLAST of rna-XM_004496399.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:7384854-7386199 FORWARD LENGTH=242)

HSP 1 Score: 200.675 bits (509), Expect = 2.274e-64
Identity = 113/240 (47.08%), Postives = 155/240 (64.58%), Query Frame = 0
Query:    2 SLPIFFLFVITSLF-KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSL--KSCQDSQKLAIKVI----SSRTKGAAAAPAPSSGGDVPYSP-SFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            S+  F+ F   SLF + S S T LVDG S W +PTVH GDS+IF+ K  Y+L IF+N+ AFN+CNF +A LLT PN+TS+TW+PSR G +YF+F N++   K+CQ +QKL ++VI    S  ++  A AP P S G V  SP S+PWP  P +  +  P P+P   + +TVP         G  G+PFINSNPAVPLPTG+VDS +I P+PTS ++   QVM+ +    +G+  +A+ L 
Sbjct:   10 SMLFFYFFCFLSLFSRPSLSATFLVDGVSVWKSPTVHTGDSVIFRHKYGYDLYIFRNKDAFNVCNFTQATLLTKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVPVSEGGVISSPSSYPWPLGPREGSAFSPGPSPSEITSVTVP---------GKDGVPFINSNPAVPLPTGDVDSTSINPLPTSTNSAH-QVMMMTLTVKLGLCCVAMFLF 239          
BLAST of rna-XM_004496399.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:7384854-7386045 FORWARD LENGTH=225)

HSP 1 Score: 190.66 bits (483), Expect = 1.070e-60
Identity = 107/213 (50.23%), Postives = 141/213 (66.20%), Query Frame = 0
Query:    2 SLPIFFLFVITSLF-KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSL--KSCQDSQKLAIKVI----SSRTKGAAAAPAPSSGGDVPYSP-SFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTS 206
            S+  F+ F   SLF + S S T LVDG S W +PTVH GDS+IF+ K  Y+L IF+N+ AFN+CNF +A LLT PN+TS+TW+PSR G +YF+F N++   K+CQ +QKL ++VI    S  ++  A AP P S G V  SP S+PWP  P +  +  P P+P   + +TVP         G  G+PFINSNPAVPLPTG+VDS +I P+PTS
Sbjct:   10 SMLFFYFFCFLSLFSRPSLSATFLVDGVSVWKSPTVHTGDSVIFRHKYGYDLYIFRNKDAFNVCNFTQATLLTKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVPVSEGGVISSPSSYPWPLGPREGSAFSPGPSPSEITSVTVP---------GKDGVPFINSNPAVPLPTGDVDSTSINPLPTS 213          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XZP1|A0A1S2XZP1_CICAR (Uncharacterized protein LOC101490484 OS=Cicer arietinum OX=3827 GN=LOC101490484 PE=4 SV=1)

HSP 1 Score: 471.855 bits (1213), Expect = 5.093e-168
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MSLPIFFLFVITSLFKLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            MSLPIFFLFVITSLFKLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL
Sbjct:    1 MSLPIFFLFVITSLFKLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NA75|A0A2K3NA75_TRIPR (Early nodulin-like protein 2-like OS=Trifolium pratense OX=57577 GN=L195_g023202 PE=4 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 7.234e-129
Identity = 193/244 (79.10%), Postives = 208/244 (85.25%), Query Frame = 0
Query:    1 MSLPIFFLFVITSLF-KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGA----------AAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            MSLPIFF+F+I SLF KLSHSTT+LVDGS++W NPTV+IGDSIIFK KQHYNLCIFKNQ+AFNLCNF EANLLTDPN +SYTWHPSRVG FYFTFYNDSLKSCQDSQKLAIKV SS T  +          A  PAPSSGGD+  SPSFPWPF PHQ  SPGPAPTPEASSPITVPLVP+KG G    GMPFINSNPAVPLPTGEVDSATI+PIPTSG  ++GQVMIGSFGFHI VHI+ALLLL
Sbjct:    1 MSLPIFFVFLIPSLFFKLSHSTTVLVDGSTEWKNPTVYIGDSIIFKHKQHYNLCIFKNQEAFNLCNFTEANLLTDPNTSSYTWHPSRVGFFYFTFYNDSLKSCQDSQKLAIKVTSSSTTASAPEASSSSPIATTPAPSSGGDIRASPSFPWPFHPHQGSSPGPAPTPEASSPITVPLVPYKGSG---DGMPFINSNPAVPLPTGEVDSATIQPIPTSG--HQGQVMIGSFGFHIAVHIIALLLL 239          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WEA4|A0A9D4WEA4_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_065170 PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 2.021e-120
Identity = 177/225 (78.67%), Postives = 190/225 (84.44%), Query Frame = 0
Query:   16 KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGA-------AAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            KLS+STT+LVDGS +W NPTV+IGDSIIFK KQHYNLCIFKNQKAFNLCNF EA LLTDPN TSYTWHPSRVG FYFTFYNDSLK+C+DSQKLAI+V S+ +          A  PAPSSGGD+  SPSFPWPFRPHQ  SPGPAPTPEASSP+TVPLVPFKG G    GMPFINSNPAVPLPTGEVDSATI PIPTSG  ++GQVMIG FGFHI VHIMALLLL
Sbjct:   17 KLSYSTTVLVDGSLEWKNPTVYIGDSIIFKHKQHYNLCIFKNQKAFNLCNFTEATLLTDPNTTSYTWHPSRVGFFYFTFYNDSLKACEDSQKLAIEVTSATSAAVPEASSPTATTPAPSSGGDIQSSPSFPWPFRPHQGSSPGPAPTPEASSPVTVPLVPFKGSG---DGMPFINSNPAVPLPTGEVDSATINPIPTSG--HQGQVMIGPFGFHIAVHIMALLLL 236          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WDK8|A0A9D4WDK8_PEA (Uncharacterized protein (Fragment) OS=Pisum sativum OX=3888 GN=KIW84_065170 PE=4 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 4.882e-120
Identity = 183/248 (73.79%), Postives = 198/248 (79.84%), Query Frame = 0
Query:    5 IFFLFVITSL------------FKLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGA-------AAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            I F+F+  SL            FKLS+STT+LVDGS +W NPTV+IGDSIIFK KQHYNLCIFKNQKAFNLCNF EA LLTDPN TSYTWHPSRVG FYFTFYNDSLK+C+DSQKLAI+V S+ +          A  PAPSSGGD+  SPSFPWPFRPHQ  SPGPAPTPEASSP+TVPLVPFKG G    GMPFINSNPAVPLPTGEVDSATI PIPTSG  ++GQVMIG FGFHI VHIMALLLL
Sbjct:   20 IHFIFITMSLPIFFFFLISSLFFKLSYSTTVLVDGSLEWKNPTVYIGDSIIFKHKQHYNLCIFKNQKAFNLCNFTEATLLTDPNTTSYTWHPSRVGFFYFTFYNDSLKACEDSQKLAIEVTSATSAAVPEASSPTATTPAPSSGGDIQSSPSFPWPFRPHQGSSPGPAPTPEASSPVTVPLVPFKGSG---DGMPFINSNPAVPLPTGEVDSATINPIPTSG--HQGQVMIGPFGFHIAVHIMALLLL 262          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LLF8|A0A2Z6LLF8_TRISU (Phytocyanin domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_42840 PE=4 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 4.754e-118
Identity = 176/230 (76.52%), Postives = 192/230 (83.48%), Query Frame = 0
Query:   16 KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGA------------AAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            KLSHSTT+LVDGS++W NPTV+IGDSIIFK KQHYNLCIFKNQ+AFN CNF EA LLTDPN +SYTW+PSRVG FYFTFYNDSLK+CQDSQKLAIKV SS T  +            A  PAPSSGGD+  SPSFPWPF PHQ  SPGPAPTPEASSPITVPLVP+KG G    GMPFINSNPAVPLPTGEVDSATI+P+PTSG  ++GQVMIGSFGFHI VHI+ALLLL
Sbjct:   17 KLSHSTTVLVDGSTEWKNPTVYIGDSIIFKHKQHYNLCIFKNQEAFNHCNFTEATLLTDPNTSSYTWNPSRVGFFYFTFYNDSLKACQDSQKLAIKVASSSTTASAPEASSSSSSPIATTPAPSSGGDIQSSPSFPWPFHPHQGSSPGPAPTPEASSPITVPLVPYKGNG---DGMPFINSNPAVPLPTGEVDSATIQPLPTSG--HQGQVMIGSFGFHIAVHIIALLLL 241          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|G7IBY5|G7IBY5_MEDTR (Cupredoxin superfamily protein, putative OS=Medicago truncatula OX=3880 GN=11422433 PE=4 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 7.130e-117
Identity = 182/242 (75.21%), Postives = 196/242 (80.99%), Query Frame = 0
Query:    1 MSLPIFFLFVITSLF-KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNT--SYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAA------PAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            MSLPIFF F+I SLF KLSHSTTILVDGSS+W NPTV IGDSI FK KQ+YNL IFKNQKAFNLCNF +ANLLTDP+ T  SYTWHPSRVG FYFTF NDSLK+CQDSQKLAIKV  ++     A+      P PSSGGD+  SPSFPWPF PHQ  SPGPAPTPEASSPITVPLVP+KG G    GMPFINSNPAVPLPTGEVDSATI P+ TSG  ++GQVMIG  GFH  VHIMALLLL
Sbjct:    1 MSLPIFFYFLILSLFFKLSHSTTILVDGSSEWKNPTVSIGDSITFKHKQNYNLYIFKNQKAFNLCNFTQANLLTDPSTTSCSYTWHPSRVGFFYFTFSNDSLKACQDSQKLAIKVTPTKASAPEASSPMPTTPGPSSGGDIQSSPSFPWPFHPHQGSSPGPAPTPEASSPITVPLVPYKGSG---DGMPFINSNPAVPLPTGEVDSATIHPLATSG--HQGQVMIGLVGFHAAVHIMALLLL 237          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|I3SBE2|I3SBE2_MEDTR (Cupredoxin OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 3.172e-113
Identity = 178/241 (73.86%), Postives = 192/241 (79.67%), Query Frame = 0
Query:    1 MSLPIFFLFVITSLF-KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNT--SYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAA------PAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLL 232
            MSLPIFF F+I SLF KLSHSTTILVDGSS+W NPTV IGDSI FK KQ+YNL IFKNQKAFNLCNF +ANLLTDP+ T  SYTWHPSRVG FYFTF NDSLK+CQDSQKLAIKV  ++     A+      P PSSGGD+  SPSFPWPF PHQ  SPGPAPTPEASSPITVPLVP+KG G    GMPFINSNPAVPLPTGE D ATI P+ T G  ++GQVMIG  GFH  VHIMALLL
Sbjct:    1 MSLPIFFYFLILSLFFKLSHSTTILVDGSSEWKNPTVSIGDSITFKHKQNYNLYIFKNQKAFNLCNFTQANLLTDPSTTSCSYTWHPSRVGFFYFTFSNDSLKACQDSQKLAIKVTPTKASAPEASSPMPTTPGPSSGGDIQSSPSFPWPFHPHQGSSPGPAPTPEASSPITVPLVPYKGSG---DGMPFINSNPAVPLPTGEADFATIHPLATFG--HQGQVMIGLVGFHAAVHIMALLL 236          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MIA8|A0A8B8MIA8_ABRPR (Uncharacterized protein LOC113873629 OS=Abrus precatorius OX=3816 GN=LOC113873629 PE=4 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.618e-107
Identity = 161/215 (74.88%), Postives = 177/215 (82.33%), Query Frame = 0
Query:   19 HSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAAPAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            H TTILVDGSS+W NP V IGD+IIFK KQHYNL IFKNQ+AF LCNF +A LLT+PN TSYTWHPSR G FYFTF+N SLK+CQ S+KLAIKV S+  +   A PAPSSGG+VP SPSFPWPFRPHQ  SPGPA  P+ASSP+TVPLVP KG     GGMPFINSNPAVPLPTGEVDSATIRP+PTSG  + GQVMIGS GFHI +H MALLLL
Sbjct:   20 HCTTILVDGSSEWKNPIVSIGDNIIFKHKQHYNLYIFKNQEAFKLCNFTQATLLTNPNTTSYTWHPSRPGFFYFTFHNGSLKACQGSEKLAIKVASAAEQSPMATPAPSSGGEVPSSPSFPWPFRPHQAASPGPA--PQASSPVTVPLVPDKG-----GGMPFINSNPAVPLPTGEVDSATIRPLPTSG--HEGQVMIGSIGFHIAMHTMALLLL 225          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A072VPQ1|A0A072VPQ1_MEDTR (Cupredoxin superfamily protein, putative OS=Medicago truncatula OX=3880 GN=11422433 PE=4 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 2.258e-105
Identity = 168/225 (74.67%), Postives = 182/225 (80.89%), Query Frame = 0
Query:    1 MSLPIFFLFVITSLF-KLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNT--SYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSRTKGAAAA------PAPSSGGDVPYSPSFPWPFRPHQVVSPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMI 216
            MSLPIFF F+I SLF KLSHSTTILVDGSS+W NPTV IGDSI FK KQ+YNL IFKNQKAFNLCNF +ANLLTDP+ T  SYTWHPSRVG FYFTF NDSLK+CQDSQKLAIKV  ++     A+      P PSSGGD+  SPSFPWPF PHQ  SPGPAPTPEASSPITVPLVP+KG G    GMPFINSNPAVPLPTGEVDSATI P+ TSG  ++GQV I
Sbjct:    1 MSLPIFFYFLILSLFFKLSHSTTILVDGSSEWKNPTVSIGDSITFKHKQNYNLYIFKNQKAFNLCNFTQANLLTDPSTTSCSYTWHPSRVGFFYFTFSNDSLKACQDSQKLAIKVTPTKASAPEASSPMPTTPGPSSGGDIQSSPSFPWPFHPHQGSSPGPAPTPEASSPITVPLVPYKGSG---DGMPFINSNPAVPLPTGEVDSATIHPLATSG--HQGQVPI 220          
BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N6G7|A0A4D6N6G7_VIGUN (Cupredoxin OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3113 PE=4 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.453e-98
Identity = 157/219 (71.69%), Postives = 174/219 (79.45%), Query Frame = 0
Query:   19 HSTTILVDGSSKWNNPTVHIGDSIIFKPKQHYNLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLKSCQDSQKLAIKVISSR---TKGAAAAPAPSSGGDVPYSPSFPWPFRPHQVV-SPGPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATIRPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL 233
            HS TILVDGSS+W NPTV IGDSIIFK KQH+NL IFKN+KA+NLCN  +A LLT+P    YTWHPSR G FYFTF+N SLK+C+DS+KLAIKV SS         A PAPSSGG+VP SPSFPWPFRPHQ   SPGPAP  +A SP+TVPLVP KG     GGMPFINSNPAVPLPTGEVDSATIRP+PTSG  ++GQVMIGSFG  I V+ MALLLL
Sbjct:   21 HSATILVDGSSEWKNPTVSIGDSIIFKHKQHFNLYIFKNEKAYNLCNITQATLLTNP----YTWHPSRPGFFYFTFHNGSLKACKDSEKLAIKVASSAMVPEPSPVATPAPSSGGEVPSSPSFPWPFRPHQTASSPGPAPQAQAGSPLTVPLVPDKG-----GGMPFINSNPAVPLPTGEVDSATIRPLPTSG--HQGQVMIGSFGVGIAVYTMALLLL 228          
The following BLAST results are available for this feature:
BLAST of rna-XM_004496399.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|2.274e-6447.08Symbols: no symbol available | no full name availa... [more]
|1.070e-6050.23Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004496399.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_004496399.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XZP1|A0A1S2XZP1_CICAR5.093e-168100.00Uncharacterized protein LOC101490484 OS=Cicer arie... [more]
tr|A0A2K3NA75|A0A2K3NA75_TRIPR7.234e-12979.10Early nodulin-like protein 2-like OS=Trifolium pra... [more]
tr|A0A9D4WEA4|A0A9D4WEA4_PEA2.021e-12078.67Uncharacterized protein OS=Pisum sativum OX=3888 G... [more]
tr|A0A9D4WDK8|A0A9D4WDK8_PEA4.882e-12073.79Uncharacterized protein (Fragment) OS=Pisum sativu... [more]
tr|A0A2Z6LLF8|A0A2Z6LLF8_TRISU4.754e-11876.52Phytocyanin domain-containing protein OS=Trifolium... [more]
tr|G7IBY5|G7IBY5_MEDTR7.130e-11775.21Cupredoxin superfamily protein, putative OS=Medica... [more]
tr|I3SBE2|I3SBE2_MEDTR3.172e-11373.86Cupredoxin OS=Medicago truncatula OX=3880 PE=2 SV=... [more]
tr|A0A8B8MIA8|A0A8B8MIA8_ABRPR4.618e-10774.88Uncharacterized protein LOC113873629 OS=Abrus prec... [more]
tr|A0A072VPQ1|A0A072VPQ1_MEDTR2.258e-10574.67Cupredoxin superfamily protein, putative OS=Medica... [more]
tr|A0A4D6N6G7|A0A4D6N6G7_VIGUN2.453e-9871.69Cupredoxin OS=Vigna unguiculata OX=3917 GN=DEO72_L... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3D2.60.40.420coord: 19..115
e-value: 4.9E-9
score: 38.3
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 20..113
NoneNo IPR availablePANTHERPTHR34662OS04G0422700 PROTEINcoord: 4..231

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004496399.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496399.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496399.2; organism=Cicer arietinum; type=mRNA; length=702bp
ATGTCTCTTCCAATTTTCTTTTTATTTGTTATAACTTCACTGTTTAAACT
TTCACATTCCACCACAATTCTAGTAGATGGATCTTCAAAGTGGAACAACC
CCACTGTTCACATTGGTGATTCAATCATTTTCAAACCCAAACAACACTAC
AACCTCTGCATTTTCAAAAACCAGAAAGCCTTCAATCTCTGCAATTTCAT
TGAAGCCAATCTTCTCACAGATCCAAACAATACCTCCTACACGTGGCACC
CTTCTCGTGTTGGTGTCTTCTACTTCACCTTCTACAACGACTCACTCAAA
TCTTGCCAAGATTCTCAAAAACTAGCCATAAAGGTTATTAGTTCAAGAAC
AAAAGGTGCAGCAGCAGCACCAGCTCCTTCTTCTGGTGGAGATGTACCAT
ATTCACCTTCATTTCCATGGCCTTTTCGTCCTCACCAAGTTGTTTCACCA
GGTCCAGCACCAACACCAGAAGCAAGTTCACCTATAACAGTTCCATTGGT
ACCATTTAAAGGTGGTGGTGGTGGTAATGGTGGCATGCCGTTTATTAACA
GTAACCCTGCAGTTCCTCTGCCTACTGGTGAAGTTGATTCTGCTACCATA
CGACCCATTCCCACTTCTGGGTCTGCCAATCGAGGACAGGTGATGATTGG
ATCATTTGGATTTCATATTGGTGTGCACATTATGGCTTTACTGCTGCTGT
AA
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protein sequence of rna-XM_004496399.2_CaCDCfrontier-NCBI_v1

>rna-XM_004496399.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496399.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496399.2_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=233bp
MSLPIFFLFVITSLFKLSHSTTILVDGSSKWNNPTVHIGDSIIFKPKQHY
NLCIFKNQKAFNLCNFIEANLLTDPNNTSYTWHPSRVGVFYFTFYNDSLK
SCQDSQKLAIKVISSRTKGAAAAPAPSSGGDVPYSPSFPWPFRPHQVVSP
GPAPTPEASSPITVPLVPFKGGGGGNGGMPFINSNPAVPLPTGEVDSATI
RPIPTSGSANRGQVMIGSFGFHIGVHIMALLLL
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mRNA from alignment at chr4:11406147..11408312-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004496399.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496399.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496399.2; organism=Cicer arietinum; type=mRNA; length=2166bp; location=Sequence derived from: chr4:11406147..11408312- (Cicer arietinum
CCAGTGATGATAAATATATATCACAAAAGCCACAAAACCTCTTATGATTT TGCCTCTCTCTACAATTTTCCTTGAAAAAAACACACACACACAAAGCACA TTCATCACAAACTCACAATGTCTCTTCCAATTTTCTTTTTATTTGTTATA ACTTCACTGTTTAAACTTTCACATTCCACCACAATTCTAGTAGATGGATC TTCAAAGTGGAACAACCCCACTGTTCACATTGGTGATTCAATCAGTAAGT ATAAACACAATTAAACAAAAACAAAAAAACAAACTTGAATCTTCACAACA ACAAAAATGCTCAACAATTTCAGCTAGTTACTAACATTACTCTGTTTGTG TTTCTGTTTCAGTTTTCAAACCCAAACAACACTACAACCTCTGCATTTTC AAAAACCAGAAAGCCTTCAATCTCTGCAATTTCATTGAAGCCAATCTTCT CACAGATCCAAACAATACCTCCTACACGGTAACACTCTTCAAATTTCATC TGGGTTCTTCAAAAACACCATAAAAATTCATTCTTTTTTATTTTCTGTGT TCTGCATAACCAAGTGAAAAAAATTACATTTTTTATTTTCTGTTTCAATT TTCAGTGGCACCCTTCTCGTGTTGGTGTCTTCTACTTCACCTTCTACAAC GACTCACTCAAATCTTGCCAAGATTCTCAAAAACTAGCCATAAAGGTTAT TAGTTCAAGAACAAAAGGTGCAGCAGCAGCACCAGCTCCTTCTTCTGGTG GAGATGTACCATATTCACCTTCATTTCCATGGCCTTTTCGTCCTCACCAA GTTGTTTCACCAGGTCCAGCACCAACACCAGAAGCAAGTTCACCTATAAC AGTTCCATTGGTACCATTTAAAGGTGGTGGTGGTGGTAATGGTGGCATGC CGTTTATTAACAGTAACCCTGCAGTTCCTCTGCCTACTGGTGAAGTTGAT TCTGCTACCATACGACCCATTCCCACTTCTGGGTCTGCCAATCGAGGACA GGTTCCCATACCCTTCTCTCACTCTTTCTTTTTTAAACTATGCACTCATT AATGTGTAGCATTTCTTTATTTATTAAGTTATTTAAAATAATTATTTAAT TATTAAATTTATTTTAACGTGTCAATATGGTGTGGATGTCACACATCGAG TGTGTCGGACATCATGTCTTCAATTAAAAGTGTTGATGTTTTAAAGATTG ATTATGTGCACTTTTATGAAATTACATAATTTAATTATGAAATACTGATA TAGACACACTTTCTATTTGAAGTCTCGATGATATGTAGAAAACTATAATT ACATTGATTATAGACCTTAATAGATCTTTTGTAATAAAAGTTTCAATTGA TGGGTGCACCTAAATGTATTTTTCGTGCTAAGGACCTTAATGTGATGTAT TAGGTAGCAAGCAAACACATAAAATGTGTTTGTTTTGTGGTATGGCAAGC TAAGCACCTTATGTGGTTTATATTATAGCTAGCAAGGTAGTACTAAAATG TGTGTTCTGTGCTAAGCACCTTGATGTGATTGATTTGCAAACAAACAAGA ATATGAATCATAAATGTGTTTAGTAGTGTGAATTAACGGCTATAGTGTAG TAGAATCTAAAAATTTATATCGTTCTACGATATACTATTTAATATAAAGT AGTGTGAAATAATATATATATATATATATATATATATATATATATATATA TATATATATATATATATATAAAAATGTTATATATATATATATATATATAT ATATAACAATGTTATAGCACTATAAAGTAGCATAATTTAGAACAAATTTG ATTTGCAATGGACAACAATGTATTTGATGCAAGACATTGATGAGTAGTGA GATTGATGAATTAGTGATTGGGAGTTGATTTGTAATGTGGTTGATTGCAG GTGATGATTGGATCATTTGGATTTCATATTGGTGTGCACATTATGGCTTT ACTGCTGCTGTAAGAAGAAAGAGTTGTAGGGCAATGGTGTCCGACACACA CCATGAACTTTGGTGAAATGTATCTAAAGTAGCTTTAAGAGTGATGATTA TACCATGTATTAAGATGCTCTTGCATTCTACTTTAGAGTTTTTACCACTT TTTGTTCTTTGGATTTGCAAATTGCAATGTTAGGAGTAATATTGATTGCT GCTTTTGCTTTTTATT
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Coding sequence (CDS) from alignment at chr4:11406147..11408312-

>rna-XM_004496399.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496399.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496399.2; organism=Cicer arietinum; type=CDS; length=702bp; location=Sequence derived from: chr4:11406147..11408312- (Cicer arietinum
ATGTCTCTTCCAATTTTCTTTTTATTTGTTATAACTTCACTGTTTAAACT
TTCACATTCCACCACAATTCTAGTAGATGGATCTTCAAAGTGGAACAACC
CCACTGTTCACATTGGTGATTCAATCATTTTCAAACCCAAACAACACTAC
AACCTCTGCATTTTCAAAAACCAGAAAGCCTTCAATCTCTGCAATTTCAT
TGAAGCCAATCTTCTCACAGATCCAAACAATACCTCCTACACGTGGCACC
CTTCTCGTGTTGGTGTCTTCTACTTCACCTTCTACAACGACTCACTCAAA
TCTTGCCAAGATTCTCAAAAACTAGCCATAAAGGTTATTAGTTCAAGAAC
AAAAGGTGCAGCAGCAGCACCAGCTCCTTCTTCTGGTGGAGATGTACCAT
ATTCACCTTCATTTCCATGGCCTTTTCGTCCTCACCAAGTTGTTTCACCA
GGTCCAGCACCAACACCAGAAGCAAGTTCACCTATAACAGTTCCATTGGT
ACCATTTAAAGGTGGTGGTGGTGGTAATGGTGGCATGCCGTTTATTAACA
GTAACCCTGCAGTTCCTCTGCCTACTGGTGAAGTTGATTCTGCTACCATA
CGACCCATTCCCACTTCTGGGTCTGCCAATCGAGGACAGGTGATGATTGG
ATCATTTGGATTTCATATTGGTGTGCACATTATGGCTTTACTGCTGCTGT
AA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin