rna-XM_004496597.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-XM_004496597.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:20997591-20998755 FORWARD LENGTH=343) HSP 1 Score: 98.5969 bits (244), Expect = 1.055e-23 Identity = 110/334 (32.93%), Postives = 149/334 (44.61%), Query Frame = 0 Query: 4 KQRKKHIREPPSIPFIWEAKPGIPKKDWKP---------------------------------------VASSLSQSLPKTPLKQIA----------------SVPFVWEEKPGKPLHNFSHVSVNESESITSL------DLESFSFENDESVSLVPSLLANCLVS--STKVSSAIPLQQ---NSLYVSSSPASS---ETDCSISSYETGMSSLTGSAFLECLFPLFPP----KSGFLE--RNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 K +K +R+PPS+PFIWE +PG PKK+W+P +S+ LP PL+ SVPF WEE PG+P F S E D+E+ S D++ S S + + L + S +S A+ + + N V+SS +S E+D S SSY TG SSL G++FLE LFP P K+ E + +T +++K+ R P TLGELIMMSRRRS +A M K +P + T+ A C FV IEGL +KY PRLKLI Sbjct: 10 KPPRKQLRQPPSVPFIWEERPGFPKKNWQPSLATFVPSPPPLPPPIPVPVKLVTSVPFRWEETPGKPLPASSNDPPQLPHPPLETATPTPLPPPVPVPVKQVTSVPFDWEETPGQPYPCFVDTSPPELLDQPLPPPPMYGDVETSSDIFDDASSDSFSSVPSLLATNRSVSISGAVAVDEFDDNLNTVTSSMPTSPAYESDDSTSSYMTGASSLVGASFLEKLFPRLLPSEKVKAAVSEDVQVSTHPLHEEVKLTTETDNMSIGFPVRTPQTLGELIMMSRRRSYMRRAVEMRKQNPYTEFTKNGADSCCLFVPGIKMIEGLEWKKYQPRLKLI 343
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XYU8|A0A1S2XYU8_CICAR (Uncharacterized protein LOC101496421 OS=Cicer arietinum OX=3827 GN=LOC101496421 PE=4 SV=1) HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI Sbjct: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072W0C2|A0A072W0C2_MEDTR (Hydroxyproline-rich glycoprotein family protein OS=Medicago truncatula OX=3880 GN=25485111 PE=4 SV=1) HSP 1 Score: 367.466 bits (942), Expect = 9.890e-126 Identity = 204/270 (75.56%), Postives = 224/270 (82.96%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEK------DIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRK--YYPRLKLI 262 MNEK+RKKHIREPPSIPFIWE KPGIP KDWKPV SS Q LPKTPLKQIAS+PFVWEEKPG PL NFSHV +E+ESITSLDLESFSF+ +ES + VPSLLA+CLVSSTK+S+AIPLQQ SSPASSETD SISSYETG SSLTGSAFLECLFPLFPPKS FLER+ G+ EK ++K DFE+EDYTC +SRK PTLGELIMMSRRRSC KA+ MNKWDPPKKTTRKQA GCF+ VT IEGLLK+K YYPRLKL+ Sbjct: 1 MNEKERKKHIREPPSIPFIWETKPGIPIKDWKPVDSSFCQ-LPKTPLKQIASIPFVWEEKPGIPLPNFSHV--DENESITSLDLESFSFDTNESFNSVPSLLADCLVSSTKLSTAIPLQQ----TPSSPASSETDSSISSYETGRSSLTGSAFLECLFPLFPPKSSFLERD-IGYNEKLSSSLVELKGNDFENEDYTCDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPKKTTRKQAFGCFSVVTGSSIIEGLLKKKYYYYPRLKLV 262
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8M5V9|A0A8B8M5V9_ABRPR (Uncharacterized protein LOC113871264 OS=Abrus precatorius OX=3816 GN=LOC113871264 PE=4 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 5.946e-105 Identity = 187/321 (58.26%), Postives = 211/321 (65.73%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSV------------------------------------------------NESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNS--------LYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKD----IKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKL 261 M+E ++KKH+REPPS+PFIWE KPGIPKKDWKP SS+ Q PKTPLKQIASVPFVWEEKPGKPL FSHVSV N+SESITSLD E+FSF+ DES S VPSLLANCLVSSTK+++AIPLQ+NS L SSPASSETD S SSY TG SS G+ FLECLFPL+PPKSGFLER+ H E+ +DF+HED + R+PPTLGELIMMSRR R KA M KWDPPKK TRKQA GCF+ VTS IE LLKRKY+PRLK+ Sbjct: 1 MDETRKKKHVREPPSVPFIWEVKPGIPKKDWKPQISSVDQ-FPKTPLKQIASVPFVWEEKPGKPLPKFSHVSVDHVPPKPHKILIHVASSSGYSIACNYGHDDDKHKESSIENVHQGGSYNNDSESITSLDFEAFSFDADESFSSVPSLLANCLVSSTKIATAIPLQKNSLCKRNSDHLETPSSPASSETDSSTSSYATGRSSPIGATFLECLFPLYPPKSGFLERDE--HLEQVSSSLASSKDFDHEDCVSDMVRRPPTLGELIMMSRRSYGR-KAVQMKKWDPPKKITRKQAFGCFSSVTSSHMIEALLKRKYFPRLKM 317
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445IS88|A0A445IS88_GLYSO (Hydroxyproline-rich glycoprotein family protein OS=Glycine soja OX=3848 GN=D0Y65_027995 PE=4 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.201e-103 Identity = 174/302 (57.62%), Postives = 206/302 (68.21%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV-----------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNE +KKH+REPPS+PFIWE KPGIPKKDWKP +PKTPLK IASVPFVWEEKPGKPL NFS HV S +++ESIT+LDLE+FSF+ DES VS VPSLLANCLV S KVS+AIPL++ + + +SSETD SSY TGMSS G+ FLECLFPLFPPKSGFLER+ + ++++ ++ HE+ + RKPPTLGELIM+SRRRSCR KA M KWDPPKK TRKQA GCF+ VT IEGLLKRKY+P+LKL+ Sbjct: 1 MNETGKKKHVREPPSVPFIWEVKPGIPKKDWKPEPEP---EVPKTPLKLIASVPFVWEEKPGKPLPNFSVDHPVPPKPLLIHVASSSAFSFACNFGHDHDKDKGSLSSSDNESITTLDLEAFSFDEDESFVSSVPSLLANCLVPSAKVSTAIPLRETTPSSPA--SSSETDSGTSSYATGMSSPIGATFLECLFPLFPPKSGFLERDENLEKVTSSPQELREKELVHENCASDLVRKPPTLGELIMISRRRSCRRKAIQMKKWDPPKKITRKQAFGCFSVVTDSNMIEGLLKRKYFPKLKLV 297
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|I1LDY5|I1LDY5_SOYBN (Hydroxyproline-rich glycoprotein family protein OS=Glycine max OX=3847 GN=100806447 PE=4 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.201e-103 Identity = 174/302 (57.62%), Postives = 206/302 (68.21%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV-----------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNE +KKH+REPPS+PFIWE KPGIPKKDWKP +PKTPLK IASVPFVWEEKPGKPL NFS HV S +++ESIT+LDLE+FSF+ DES VS VPSLLANCLV S KVS+AIPL++ + + +SSETD SSY TGMSS G+ FLECLFPLFPPKSGFLER+ + ++++ ++ HE+ + RKPPTLGELIM+SRRRSCR KA M KWDPPKK TRKQA GCF+ VT IEGLLKRKY+P+LKL+ Sbjct: 1 MNETGKKKHVREPPSVPFIWEVKPGIPKKDWKPEPEP---EVPKTPLKLIASVPFVWEEKPGKPLPNFSVDHPVPPKPLLIHVASSSAFSFACNFGHDHDKDKGSLSSSDNESITTLDLEAFSFDEDESFVSSVPSLLANCLVPSAKVSTAIPLRETTPSSPA--SSSETDSGTSSYATGMSSPIGATFLECLFPLFPPKSGFLERDENLEKVTSSPQELREKELVHENCASDLVRKPPTLGELIMISRRRSCRRKAIQMKKWDPPKKITRKQAFGCFSVVTDSNMIEGLLKRKYFPKLKLV 297
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445F5A9|A0A445F5A9_GLYSO (Hydroxyproline-rich glycoprotein family protein OS=Glycine soja OX=3848 GN=D0Y65_054186 PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 8.117e-94 Identity = 173/304 (56.91%), Postives = 206/304 (67.76%), Query Frame = 0 Query: 1 MNEK-QRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV------------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNE+ ++KKH+REPPS+PFIWE KPGIPKKDWKP A +P TPLK IASVPFVWEEKPGKPL NFS HV S +++ESIT+LDLE+FSF+ DES +S VPSLLANCLV S KVS+AIPL++ + SSP SSETD SSY TG+SS G+ FLECLFPL+PPKS FLE + + ++++ ++ + ED R+PPTLGELIMMSRRRSCR KA M KWDPPKK TRKQA GCF+ VT IEGLLKRKY+PRLKL+ Sbjct: 1 MNERGKKKKHVREPPSVPFIWEVKPGIPKKDWKPEAE-----IPITPLKLIASVPFVWEEKPGKPLPNFSVDHPVPSKPLLIHVASSSGFSVACNFGHDDKEKGSLSLSSSDNESITTLDLEAFSFDEDESFISSVPSLLANCLVPSAKVSTAIPLRETT---PSSPTSSETDSGTSSYATGLSSPIGATFLECLFPLYPPKSCFLESDENLEKVTSSAQELRKKELDLEDCAGDSVRRPPTLGELIMMSRRRSCRRKAVQMKKWDPPKKITRKQAFGCFSVVTDNNMIEGLLKRKYFPRLKLV 296
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|I1NGL6|I1NGL6_SOYBN (Hydroxyproline-rich glycoprotein family protein OS=Glycine max OX=3847 GN=100818597 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 4.550e-93 Identity = 172/304 (56.58%), Postives = 205/304 (67.43%), Query Frame = 0 Query: 1 MNEK-QRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV------------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNE+ ++KKH+REPPS+PFIWE KPGIPKKDWKP A +P TPLK IASVPFVWEEKPGKPL NFS HV S +++ESIT+LDLE+FSF+ DES +S VPSLLANCLV S KV +AIPL++ + SSP SSETD SSY TG+SS G+ FLECLFPL+PPKS FLE + + ++++ ++ + ED R+PPTLGELIMMSRRRSCR KA M KWDPPKK TRKQA GCF+ VT IEGLLKRKY+PRLKL+ Sbjct: 1 MNERGKKKKHVREPPSVPFIWEVKPGIPKKDWKPEAE-----IPITPLKLIASVPFVWEEKPGKPLPNFSVDHPVPSKPLLIHVASSSGFSVACNFGHDDKEKGSLSLSSSDNESITTLDLEAFSFDEDESFISSVPSLLANCLVPSAKVPTAIPLRETT---PSSPTSSETDSGTSSYATGLSSPIGATFLECLFPLYPPKSCFLESDENLEKVTSSAQELRKKELDLEDCAGDSVRRPPTLGELIMMSRRRSCRRKAVQMKKWDPPKKITRKQAFGCFSVVTDNNMIEGLLKRKYFPRLKLV 296
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|V7BBT6|V7BBT6_PHAVU (Hydroxyproline-rich glycoprotein family protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G063100g PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 4.495e-92 Identity = 178/305 (58.36%), Postives = 203/305 (66.56%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVA--SSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVN-------------------------------------ESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTE----KDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MN +KKH+REPP++PFIWE KPGIPKKDWK A SSL P+TPLK IASVPFVWEEKPGKPL NFS VSV+ +SESITSLDLE+F+F+ DES LVPSLLANCLV S KVSSAIPL + SSPASSETD SISSY TG SS G+ FLE LFPL+ P+SGFLER+ E ++ +DF+H D + R+PPTLGELIMMSRRRSCR KA M KWD PKK TR+QA GCF+ VT+ IEGLLKRKY+PR KLI Sbjct: 1 MNATAKKKHVREPPAVPFIWEVKPGIPKKDWKAEAEVSSLGH-FPQTPLKLIASVPFVWEEKPGKPLPNFSDVSVDPVLPKPEKTLIHIASSSGFSVACNFGHDDKDKGSCSYDSESITSLDLEAFTFDADESFGLVPSLLANCLVPSAKVSSAIPLAETP----SSPASSETDSSISSYATGRSSPIGATFLESLFPLYAPQSGFLERDENLQKETSSTHEVGAKDFDHVDIASDMIRRPPTLGELIMMSRRRSCRRKAVQMKKWDLPKKITRQQAFGCFSIVTNSKMIEGLLKRKYFPRHKLI 300
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N715|A0A4D6N715_VIGUN (Hydroxyproline-rich glycoprotein family protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3307 PE=4 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 4.057e-89 Identity = 166/304 (54.61%), Postives = 193/304 (63.49%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQS-LPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVN-------------------------------------ESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTE----KDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNE +KKHIREPPS+PFIWE KPGIPKK WKP S S P+TPLK IASVPFVWEEKPGKPL NFS VS++ +SESITSLDLE+F+F+ DES ANC+V S KVS+AIP + SSPASSETD SISSY TG SS G+ FLE LFPL+ P+ FL R+ E +++ I+DF+ ED + R+PPTLGELIMMSRR SCR KA M KWD PKK TR+QA GCF VT+ +EGLLKRKY+PRLKLI Sbjct: 1 MNETAKKKHIREPPSVPFIWEVKPGIPKKYWKPETEVSSVSHFPQTPLKLIASVPFVWEEKPGKPLPNFSDVSLDPVLPKPEKILIHVASSSGFSVACNFGHDGKGKGTCNYDSESITSLDLEAFTFDADES-------FANCVVPSEKVSTAIPPAETP----SSPASSETDSSISSYATGRSSPIGATFLESLFPLYAPQFSFLARDENKEKETSRTQEVGIKDFDDEDVGSDMIRRPPTLGELIMMSRRSSCRRKAVQMKKWDQPKKMTRQQAFGCFPIVTNGKMMEGLLKRKYFPRLKLI 293
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A371I2Y4|A0A371I2Y4_MUCPR (Hydroxyproline-rich glycoprotein family protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06232 PE=4 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 2.761e-87 Identity = 169/295 (57.29%), Postives = 200/295 (67.80%), Query Frame = 0 Query: 1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVN---------------------------ESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEK------DIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262 MNE RKKH+REPPS+PFIWE KPGIPKKDWKP S+ S PK P+K IAS+PFVWEEKPG PL NF+HVSV+ + + SLDL+SFSF+ DES S VPS+LANC+V+++K + L Q SSPASSETD S SSY TG SS G+ FLECLFPL+PPKSGFLE ++ H EK +++ + F+HED + RKPPTLGELIMMSRRRSCR KA + KWDPPKK TRKQA GCFT ++ IEGLLKRKY PRLKL+ Sbjct: 1 MNE-TRKKHVREPPSVPFIWEVKPGIPKKDWKPEVCSVGHS-PKIPVKLIASIPFVWEEKPGTPLPNFTHVSVDPVPPKPEKILIHVASSSGFSAACNYGHDDKDKGSLDLKSFSFDADESFSSVPSVLANCVVATSKSNC---LGQMETQTPSSPASSETDSSTSSYATGRSSPIGATFLECLFPLYPPKSGFLEGDD--HLEKVPSSPQELRGKGFDHEDCATHMPRKPPTLGELIMMSRRRSCRRKAIQLKKWDPPKKITRKQAFGCFTIPSNSNVIEGLLKRKYLPRLKLL 288 The following BLAST results are available for this feature:
BLAST of rna-XM_004496597.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_004496597.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3; organism=Cicer arietinum; type=mRNA; length=789bpback to top protein sequence of rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 >rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=262bpback to top mRNA from alignment at chr4:13169405..13171062- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3; organism=Cicer arietinum; type=mRNA; length=1658bp; location=Sequence derived from: chr4:13169405..13171062- (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:13169405..13171062- >rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3; organism=Cicer arietinum; type=CDS; length=789bp; location=Sequence derived from: chr4:13169405..13171062- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|