rna-XM_004496597.3

Transcript Overview
Namerna-XM_004496597.3
Unique Namerna-XM_004496597.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length789
Productuncharacterized LOC101496421
References
External references for this mRNA
DatabaseAccession
GeneID101496421
GenBankXM_004496597.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:13169405..13171062 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL341Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0643Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0762Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL1024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
canccR0443Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR343Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cantifR231Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR311Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR240Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR353Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR262Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR238Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR266Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsR284Pisum sativum Cameor genome v1aPisum sativum
canpsR363Pisum sativum Cameor genome v1aPisum sativum
avjcanL310Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR212Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014657716.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.007G063100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_04029Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.3g140680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_007664Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan02g219500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cr_08462.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg40999.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g113000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va02G065870.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun07g233600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat06G0551300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat6g202320.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr07.555Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_04540Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101496421gene-LOC101496421_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004496597.3_CaCDCfrontier-NCBI_v1rna-XM_004496597.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004496597.3_CaCDCfrontier-NCBI_v1rna-XM_004496597.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004496597.3-3exon-XM_004496597.3-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496597.3-2exon-XM_004496597.3-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004496597.3-1exon-XM_004496597.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004496654.1cds-XP_004496654.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_004496654.1cds-XP_004496654.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004496654.1cds-XP_004496654.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


Homology
BLAST of rna-XM_004496597.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:20997591-20998755 FORWARD LENGTH=343)

HSP 1 Score: 98.5969 bits (244), Expect = 1.055e-23
Identity = 110/334 (32.93%), Postives = 149/334 (44.61%), Query Frame = 0
Query:    4 KQRKKHIREPPSIPFIWEAKPGIPKKDWKP---------------------------------------VASSLSQSLPKTPLKQIA----------------SVPFVWEEKPGKPLHNFSHVSVNESESITSL------DLESFSFENDESVSLVPSLLANCLVS--STKVSSAIPLQQ---NSLYVSSSPASS---ETDCSISSYETGMSSLTGSAFLECLFPLFPP----KSGFLE--RNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            K  +K +R+PPS+PFIWE +PG PKK+W+P                                        +S+    LP  PL+                   SVPF WEE PG+P   F   S  E             D+E+ S   D++ S   S + + L +  S  +S A+ + +   N   V+SS  +S   E+D S SSY TG SSL G++FLE LFP   P    K+   E  + +T    +++K+             R P TLGELIMMSRRRS   +A  M K +P  + T+  A  C  FV     IEGL  +KY PRLKLI
Sbjct:   10 KPPRKQLRQPPSVPFIWEERPGFPKKNWQPSLATFVPSPPPLPPPIPVPVKLVTSVPFRWEETPGKPLPASSNDPPQLPHPPLETATPTPLPPPVPVPVKQVTSVPFDWEETPGQPYPCFVDTSPPELLDQPLPPPPMYGDVETSSDIFDDASSDSFSSVPSLLATNRSVSISGAVAVDEFDDNLNTVTSSMPTSPAYESDDSTSSYMTGASSLVGASFLEKLFPRLLPSEKVKAAVSEDVQVSTHPLHEEVKLTTETDNMSIGFPVRTPQTLGELIMMSRRRSYMRRAVEMRKQNPYTEFTKNGADSCCLFVPGIKMIEGLEWKKYQPRLKLI 343          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XYU8|A0A1S2XYU8_CICAR (Uncharacterized protein LOC101496421 OS=Cicer arietinum OX=3827 GN=LOC101496421 PE=4 SV=1)

HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI
Sbjct:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072W0C2|A0A072W0C2_MEDTR (Hydroxyproline-rich glycoprotein family protein OS=Medicago truncatula OX=3880 GN=25485111 PE=4 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 9.890e-126
Identity = 204/270 (75.56%), Postives = 224/270 (82.96%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEK------DIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRK--YYPRLKLI 262
            MNEK+RKKHIREPPSIPFIWE KPGIP KDWKPV SS  Q LPKTPLKQIAS+PFVWEEKPG PL NFSHV  +E+ESITSLDLESFSF+ +ES + VPSLLA+CLVSSTK+S+AIPLQQ      SSPASSETD SISSYETG SSLTGSAFLECLFPLFPPKS FLER+  G+ EK      ++K  DFE+EDYTC +SRK PTLGELIMMSRRRSC  KA+ MNKWDPPKKTTRKQA GCF+ VT    IEGLLK+K  YYPRLKL+
Sbjct:    1 MNEKERKKHIREPPSIPFIWETKPGIPIKDWKPVDSSFCQ-LPKTPLKQIASIPFVWEEKPGIPLPNFSHV--DENESITSLDLESFSFDTNESFNSVPSLLADCLVSSTKLSTAIPLQQ----TPSSPASSETDSSISSYETGRSSLTGSAFLECLFPLFPPKSSFLERD-IGYNEKLSSSLVELKGNDFENEDYTCDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPKKTTRKQAFGCFSVVTGSSIIEGLLKKKYYYYPRLKLV 262          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8M5V9|A0A8B8M5V9_ABRPR (Uncharacterized protein LOC113871264 OS=Abrus precatorius OX=3816 GN=LOC113871264 PE=4 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 5.946e-105
Identity = 187/321 (58.26%), Postives = 211/321 (65.73%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSV------------------------------------------------NESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNS--------LYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEKD----IKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKL 261
            M+E ++KKH+REPPS+PFIWE KPGIPKKDWKP  SS+ Q  PKTPLKQIASVPFVWEEKPGKPL  FSHVSV                                                N+SESITSLD E+FSF+ DES S VPSLLANCLVSSTK+++AIPLQ+NS        L   SSPASSETD S SSY TG SS  G+ FLECLFPL+PPKSGFLER+   H E+        +DF+HED    + R+PPTLGELIMMSRR   R KA  M KWDPPKK TRKQA GCF+ VTS   IE LLKRKY+PRLK+
Sbjct:    1 MDETRKKKHVREPPSVPFIWEVKPGIPKKDWKPQISSVDQ-FPKTPLKQIASVPFVWEEKPGKPLPKFSHVSVDHVPPKPHKILIHVASSSGYSIACNYGHDDDKHKESSIENVHQGGSYNNDSESITSLDFEAFSFDADESFSSVPSLLANCLVSSTKIATAIPLQKNSLCKRNSDHLETPSSPASSETDSSTSSYATGRSSPIGATFLECLFPLYPPKSGFLERDE--HLEQVSSSLASSKDFDHEDCVSDMVRRPPTLGELIMMSRRSYGR-KAVQMKKWDPPKKITRKQAFGCFSSVTSSHMIEALLKRKYFPRLKM 317          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445IS88|A0A445IS88_GLYSO (Hydroxyproline-rich glycoprotein family protein OS=Glycine soja OX=3848 GN=D0Y65_027995 PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.201e-103
Identity = 174/302 (57.62%), Postives = 206/302 (68.21%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV-----------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNE  +KKH+REPPS+PFIWE KPGIPKKDWKP        +PKTPLK IASVPFVWEEKPGKPL NFS            HV                       S +++ESIT+LDLE+FSF+ DES VS VPSLLANCLV S KVS+AIPL++ +    +  +SSETD   SSY TGMSS  G+ FLECLFPLFPPKSGFLER+        + ++++ ++  HE+    + RKPPTLGELIM+SRRRSCR KA  M KWDPPKK TRKQA GCF+ VT    IEGLLKRKY+P+LKL+
Sbjct:    1 MNETGKKKHVREPPSVPFIWEVKPGIPKKDWKPEPEP---EVPKTPLKLIASVPFVWEEKPGKPLPNFSVDHPVPPKPLLIHVASSSAFSFACNFGHDHDKDKGSLSSSDNESITTLDLEAFSFDEDESFVSSVPSLLANCLVPSAKVSTAIPLRETTPSSPA--SSSETDSGTSSYATGMSSPIGATFLECLFPLFPPKSGFLERDENLEKVTSSPQELREKELVHENCASDLVRKPPTLGELIMISRRRSCRRKAIQMKKWDPPKKITRKQAFGCFSVVTDSNMIEGLLKRKYFPKLKLV 297          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|I1LDY5|I1LDY5_SOYBN (Hydroxyproline-rich glycoprotein family protein OS=Glycine max OX=3847 GN=100806447 PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.201e-103
Identity = 174/302 (57.62%), Postives = 206/302 (68.21%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV-----------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNE  +KKH+REPPS+PFIWE KPGIPKKDWKP        +PKTPLK IASVPFVWEEKPGKPL NFS            HV                       S +++ESIT+LDLE+FSF+ DES VS VPSLLANCLV S KVS+AIPL++ +    +  +SSETD   SSY TGMSS  G+ FLECLFPLFPPKSGFLER+        + ++++ ++  HE+    + RKPPTLGELIM+SRRRSCR KA  M KWDPPKK TRKQA GCF+ VT    IEGLLKRKY+P+LKL+
Sbjct:    1 MNETGKKKHVREPPSVPFIWEVKPGIPKKDWKPEPEP---EVPKTPLKLIASVPFVWEEKPGKPLPNFSVDHPVPPKPLLIHVASSSAFSFACNFGHDHDKDKGSLSSSDNESITTLDLEAFSFDEDESFVSSVPSLLANCLVPSAKVSTAIPLRETTPSSPA--SSSETDSGTSSYATGMSSPIGATFLECLFPLFPPKSGFLERDENLEKVTSSPQELREKELVHENCASDLVRKPPTLGELIMISRRRSCRRKAIQMKKWDPPKKITRKQAFGCFSVVTDSNMIEGLLKRKYFPKLKLV 297          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445F5A9|A0A445F5A9_GLYSO (Hydroxyproline-rich glycoprotein family protein OS=Glycine soja OX=3848 GN=D0Y65_054186 PE=4 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 8.117e-94
Identity = 173/304 (56.91%), Postives = 206/304 (67.76%), Query Frame = 0
Query:    1 MNEK-QRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV------------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNE+ ++KKH+REPPS+PFIWE KPGIPKKDWKP A      +P TPLK IASVPFVWEEKPGKPL NFS            HV                        S +++ESIT+LDLE+FSF+ DES +S VPSLLANCLV S KVS+AIPL++ +    SSP SSETD   SSY TG+SS  G+ FLECLFPL+PPKS FLE +        + ++++ ++ + ED      R+PPTLGELIMMSRRRSCR KA  M KWDPPKK TRKQA GCF+ VT    IEGLLKRKY+PRLKL+
Sbjct:    1 MNERGKKKKHVREPPSVPFIWEVKPGIPKKDWKPEAE-----IPITPLKLIASVPFVWEEKPGKPLPNFSVDHPVPSKPLLIHVASSSGFSVACNFGHDDKEKGSLSLSSSDNESITTLDLEAFSFDEDESFISSVPSLLANCLVPSAKVSTAIPLRETT---PSSPTSSETDSGTSSYATGLSSPIGATFLECLFPLYPPKSCFLESDENLEKVTSSAQELRKKELDLEDCAGDSVRRPPTLGELIMMSRRRSCRRKAVQMKKWDPPKKITRKQAFGCFSVVTDNNMIEGLLKRKYFPRLKLV 296          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|I1NGL6|I1NGL6_SOYBN (Hydroxyproline-rich glycoprotein family protein OS=Glycine max OX=3847 GN=100818597 PE=4 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 4.550e-93
Identity = 172/304 (56.58%), Postives = 205/304 (67.43%), Query Frame = 0
Query:    1 MNEK-QRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFS------------HV------------------------SVNESESITSLDLESFSFENDES-VSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNN----TGHTEKDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNE+ ++KKH+REPPS+PFIWE KPGIPKKDWKP A      +P TPLK IASVPFVWEEKPGKPL NFS            HV                        S +++ESIT+LDLE+FSF+ DES +S VPSLLANCLV S KV +AIPL++ +    SSP SSETD   SSY TG+SS  G+ FLECLFPL+PPKS FLE +        + ++++ ++ + ED      R+PPTLGELIMMSRRRSCR KA  M KWDPPKK TRKQA GCF+ VT    IEGLLKRKY+PRLKL+
Sbjct:    1 MNERGKKKKHVREPPSVPFIWEVKPGIPKKDWKPEAE-----IPITPLKLIASVPFVWEEKPGKPLPNFSVDHPVPSKPLLIHVASSSGFSVACNFGHDDKEKGSLSLSSSDNESITTLDLEAFSFDEDESFISSVPSLLANCLVPSAKVPTAIPLRETT---PSSPTSSETDSGTSSYATGLSSPIGATFLECLFPLYPPKSCFLESDENLEKVTSSAQELRKKELDLEDCAGDSVRRPPTLGELIMMSRRRSCRRKAVQMKKWDPPKKITRKQAFGCFSVVTDNNMIEGLLKRKYFPRLKLV 296          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|V7BBT6|V7BBT6_PHAVU (Hydroxyproline-rich glycoprotein family protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G063100g PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 4.495e-92
Identity = 178/305 (58.36%), Postives = 203/305 (66.56%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVA--SSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVN-------------------------------------ESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTE----KDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MN   +KKH+REPP++PFIWE KPGIPKKDWK  A  SSL    P+TPLK IASVPFVWEEKPGKPL NFS VSV+                                     +SESITSLDLE+F+F+ DES  LVPSLLANCLV S KVSSAIPL +      SSPASSETD SISSY TG SS  G+ FLE LFPL+ P+SGFLER+     E     ++  +DF+H D    + R+PPTLGELIMMSRRRSCR KA  M KWD PKK TR+QA GCF+ VT+   IEGLLKRKY+PR KLI
Sbjct:    1 MNATAKKKHVREPPAVPFIWEVKPGIPKKDWKAEAEVSSLGH-FPQTPLKLIASVPFVWEEKPGKPLPNFSDVSVDPVLPKPEKTLIHIASSSGFSVACNFGHDDKDKGSCSYDSESITSLDLEAFTFDADESFGLVPSLLANCLVPSAKVSSAIPLAETP----SSPASSETDSSISSYATGRSSPIGATFLESLFPLYAPQSGFLERDENLQKETSSTHEVGAKDFDHVDIASDMIRRPPTLGELIMMSRRRSCRRKAVQMKKWDLPKKITRQQAFGCFSIVTNSKMIEGLLKRKYFPRHKLI 300          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N715|A0A4D6N715_VIGUN (Hydroxyproline-rich glycoprotein family protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3307 PE=4 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 4.057e-89
Identity = 166/304 (54.61%), Postives = 193/304 (63.49%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQS-LPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVN-------------------------------------ESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTE----KDIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNE  +KKHIREPPS+PFIWE KPGIPKK WKP     S S  P+TPLK IASVPFVWEEKPGKPL NFS VS++                                     +SESITSLDLE+F+F+ DES        ANC+V S KVS+AIP  +      SSPASSETD SISSY TG SS  G+ FLE LFPL+ P+  FL R+     E    +++ I+DF+ ED    + R+PPTLGELIMMSRR SCR KA  M KWD PKK TR+QA GCF  VT+   +EGLLKRKY+PRLKLI
Sbjct:    1 MNETAKKKHIREPPSVPFIWEVKPGIPKKYWKPETEVSSVSHFPQTPLKLIASVPFVWEEKPGKPLPNFSDVSLDPVLPKPEKILIHVASSSGFSVACNFGHDGKGKGTCNYDSESITSLDLEAFTFDADES-------FANCVVPSEKVSTAIPPAETP----SSPASSETDSSISSYATGRSSPIGATFLESLFPLYAPQFSFLARDENKEKETSRTQEVGIKDFDDEDVGSDMIRRPPTLGELIMMSRRSSCRRKAVQMKKWDQPKKMTRQQAFGCFPIVTNGKMMEGLLKRKYFPRLKLI 293          
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Match: tr|A0A371I2Y4|A0A371I2Y4_MUCPR (Hydroxyproline-rich glycoprotein family protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06232 PE=4 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 2.761e-87
Identity = 169/295 (57.29%), Postives = 200/295 (67.80%), Query Frame = 0
Query:    1 MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQIASVPFVWEEKPGKPLHNFSHVSVN---------------------------ESESITSLDLESFSFENDESVSLVPSLLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTGSAFLECLFPLFPPKSGFLERNNTGHTEK------DIKIEDFEHEDYTCVISRKPPTLGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGLLKRKYYPRLKLI 262
            MNE  RKKH+REPPS+PFIWE KPGIPKKDWKP   S+  S PK P+K IAS+PFVWEEKPG PL NF+HVSV+                           + +   SLDL+SFSF+ DES S VPS+LANC+V+++K +    L Q      SSPASSETD S SSY TG SS  G+ FLECLFPL+PPKSGFLE ++  H EK      +++ + F+HED    + RKPPTLGELIMMSRRRSCR KA  + KWDPPKK TRKQA GCFT  ++   IEGLLKRKY PRLKL+
Sbjct:    1 MNE-TRKKHVREPPSVPFIWEVKPGIPKKDWKPEVCSVGHS-PKIPVKLIASIPFVWEEKPGTPLPNFTHVSVDPVPPKPEKILIHVASSSGFSAACNYGHDDKDKGSLDLKSFSFDADESFSSVPSVLANCVVATSKSNC---LGQMETQTPSSPASSETDSSTSSYATGRSSPIGATFLECLFPLYPPKSGFLEGDD--HLEKVPSSPQELRGKGFDHEDCATHMPRKPPTLGELIMMSRRRSCRRKAIQLKKWDPPKKITRKQAFGCFTIPSNSNVIEGLLKRKYLPRLKLL 288          
The following BLAST results are available for this feature:
BLAST of rna-XM_004496597.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|1.055e-2332.93Symbols: no symbol available | no full name availa... [more]
back to top
BLAST of rna-XM_004496597.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_004496597.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XYU8|A0A1S2XYU8_CICAR0.000e+0100.00Uncharacterized protein LOC101496421 OS=Cicer arie... [more]
tr|A0A072W0C2|A0A072W0C2_MEDTR9.890e-12675.56Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|A0A8B8M5V9|A0A8B8M5V9_ABRPR5.946e-10558.26Uncharacterized protein LOC113871264 OS=Abrus prec... [more]
tr|A0A445IS88|A0A445IS88_GLYSO2.201e-10357.62Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|I1LDY5|I1LDY5_SOYBN2.201e-10357.62Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|A0A445F5A9|A0A445F5A9_GLYSO8.117e-9456.91Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|I1NGL6|I1NGL6_SOYBN4.550e-9356.58Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|V7BBT6|V7BBT6_PHAVU4.495e-9258.36Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|A0A4D6N715|A0A4D6N715_VIGUN4.057e-8954.61Hydroxyproline-rich glycoprotein family protein OS... [more]
tr|A0A371I2Y4|A0A371I2Y4_MUCPR2.761e-8757.29Hydroxyproline-rich glycoprotein family protein (F... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007789Protein of unknown function DUF688PFAMPF05097DUF688coord: 7..46
e-value: 5.7E-4
score: 30.8
NoneNo IPR availablePANTHERPTHR37767HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 74..262

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3; organism=Cicer arietinum; type=mRNA; length=789bp
ATGAATGAAAAACAAAGGAAGAAACATATTAGAGAGCCACCTTCAATTCC
TTTCATTTGGGAAGCAAAACCAGGAATTCCCAAGAAAGATTGGAAGCCAG
TAGCGTCATCACTTTCCCAGTCATTACCTAAAACTCCACTCAAACAAATT
GCCTCAGTTCCATTTGTTTGGGAAGAAAAGCCTGGAAAACCACTTCATAA
CTTCTCACATGTTTCAGTGAATGAGAGTGAAAGCATAACTAGCTTGGACC
TTGAATCATTTAGCTTTGAAAATGATGAATCCGTTAGCTTAGTTCCTTCT
TTGCTTGCAAACTGTCTTGTATCATCAACTAAAGTTTCTAGTGCCATTCC
ATTGCAGCAAAATTCATTGTATGTTTCATCTTCTCCAGCTTCATCAGAGA
CAGATTGTAGCATAAGTAGCTATGAAACTGGTATGTCAAGTTTAACTGGT
TCTGCATTCTTGGAATGTCTCTTTCCTTTGTTTCCACCAAAATCTGGCTT
CCTTGAAAGGAATAATACTGGTCACACAGAAAAGGATATAAAAATCGAAG
ATTTTGAGCATGAAGATTATACGTGTGTTATATCAAGGAAGCCACCAACA
CTTGGAGAGCTAATTATGATGAGCAGAAGAAGAAGCTGTAGAAACAAAGC
ATCTCTAATGAACAAATGGGATCCACCAAAGAAAACAACAAGAAAGCAAG
CTATTGGATGCTTCACGTTTGTAACCAGCAGAATTACGATTGAAGGACTG
CTGAAGAGAAAGTACTATCCTAGGCTGAAACTAATATAG
back to top

protein sequence of rna-XM_004496597.3_CaCDCfrontier-NCBI_v1

>rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=262bp
MNEKQRKKHIREPPSIPFIWEAKPGIPKKDWKPVASSLSQSLPKTPLKQI
ASVPFVWEEKPGKPLHNFSHVSVNESESITSLDLESFSFENDESVSLVPS
LLANCLVSSTKVSSAIPLQQNSLYVSSSPASSETDCSISSYETGMSSLTG
SAFLECLFPLFPPKSGFLERNNTGHTEKDIKIEDFEHEDYTCVISRKPPT
LGELIMMSRRRSCRNKASLMNKWDPPKKTTRKQAIGCFTFVTSRITIEGL
LKRKYYPRLKLI
back to top

mRNA from alignment at chr4:13169405..13171062-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3; organism=Cicer arietinum; type=mRNA; length=1658bp; location=Sequence derived from: chr4:13169405..13171062- (Cicer arietinum
AGTTAAAAAAAGTTGGCACTAAACCACTACTATCACAGAAACAAACTATT ATAAGATCAACTAAACTCAAAGCACATACAAAGAAATGAAAAATGAATGA AAAACAAAGGAAGAAACATATTAGAGAGCCACCTTCAATTCCTTTCATTT GGGAAGCAAAACCAGGAATTCCCAAGAAAGATTGGAAGCCAGTAGCGTCA TCACTTTCCCAGTCATTACCTAAAACTCCACTCAAACAAATTGCCTCAGT TCCATTTGTTTGGGAAGAAAAGCCTGGAAAACCACTTCATAACTTCTCAC ATGTTTCAGTGAATGAGAGTGAAAGCATAACTAGCTTGGACCTTGAATCA TTTAGCTTTGAAAATGATGAATCCGTTAGCTTAGTTCCTTCTTTGCTTGC AAACTGTCTTGTATCATCAACTAAAGTTTCTAGTGCCATTCCATTGCAGC AAAATTCATTGTATGTTTCATCTTCTCCAGCTTCATCAGAGACAGATTGT AGCATAAGTAGCTATGAAACTGGTATGTCAAGTTTAACTGGTTCTGCATT CTTGGAATGTCTCTTTCCTTTGTTTCCACCAAAATCTGGCTTCCTTGAAA GGAATAATACTGGTCACACAGAAAAGGTAACTTCAAGTCCAATAAAAAAT TTGTTTCCACGATTTGGGTTTATTTATCGACATAAATAGTTGTTATAGAA AACAATTTATATCTACATAAACTCTCCAAGATAACTAATGAAAATAGTTT ACATAAAACGTTATAAAATAATTTATATAAGGACTTATATAATAAGAGTT CATACTATAAGCTTTTAACGAAGTTGTTTGTCGAAAAAGGATATAAAAAT CGAAGATTTTGAGCATGAAGATTATACGTGTGTTATATCAAGGAAGCCAC CAACACTTGGAGAGCTAATTATGATGAGCAGAAGAAGAAGCTGTAGAAAC AAAGCATCTCTAATGAACAAATGGGATCCACCAAAGGTTACTGGCTTTCC TTTTTCGTTTTTCTTTCATGGTTTCGCATTCGCTATAACATTTCTTCCGA CTATATTACATATTTGACCGAGTCACACAATCTAAACCGTCAAATTGTTT CTTGAACCAACGATTCCAATCAACATATGTGTAGTTTTGTTTCACTATTA TTGGAAAATGTGTGGAAACAACACTTTTATGAATGAAGTTGAATTGATAG ATCCTATTTTACCATGCGTTGTTTTAGGACATACTGAACTTTCATAATCT GTATCTAACTTGGTTCCTTTTTAAGTATGGATAAATTTTTTTGGTATGAA TATCCTGTTTGCACAAAAAGTATAATTCAACACCAACTTTTGCTCTTTTG CCTCCTCAAATCATGCAGAAAACAACAAGAAAGCAAGCTATTGGATGCTT CACGTTTGTAACCAGCAGAATTACGATTGAAGGACTGCTGAAGAGAAAGT ACTATCCTAGGCTGAAACTAATATAGGCAGCAAAAATCAAGCACCAAGAC CCGCTGCCAATTCGCCATTAAGAACTTTGTTTGAGAGTGAGGAATGTTGA TTGTATTAAAATTTACCAATGTAGTAAAATATTTTCTTTAAAACAGCTCA TAGATGTATACATTCCTTCCCAATATGAAAACATGAAGCTGGACAAGTGT TTCTTTCA
back to top

Coding sequence (CDS) from alignment at chr4:13169405..13171062-

>rna-XM_004496597.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496597.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496597.3; organism=Cicer arietinum; type=CDS; length=789bp; location=Sequence derived from: chr4:13169405..13171062- (Cicer arietinum
ATGAATGAAAAACAAAGGAAGAAACATATTAGAGAGCCACCTTCAATTCC
TTTCATTTGGGAAGCAAAACCAGGAATTCCCAAGAAAGATTGGAAGCCAG
TAGCGTCATCACTTTCCCAGTCATTACCTAAAACTCCACTCAAACAAATT
GCCTCAGTTCCATTTGTTTGGGAAGAAAAGCCTGGAAAACCACTTCATAA
CTTCTCACATGTTTCAGTGAATGAGAGTGAAAGCATAACTAGCTTGGACC
TTGAATCATTTAGCTTTGAAAATGATGAATCCGTTAGCTTAGTTCCTTCT
TTGCTTGCAAACTGTCTTGTATCATCAACTAAAGTTTCTAGTGCCATTCC
ATTGCAGCAAAATTCATTGTATGTTTCATCTTCTCCAGCTTCATCAGAGA
CAGATTGTAGCATAAGTAGCTATGAAACTGGTATGTCAAGTTTAACTGGT
TCTGCATTCTTGGAATGTCTCTTTCCTTTGTTTCCACCAAAATCTGGCTT
CCTTGAAAGGAATAATACTGGTCACACAGAAAAGGATATAAAAATCGAAG
ATTTTGAGCATGAAGATTATACGTGTGTTATATCAAGGAAGCCACCAACA
CTTGGAGAGCTAATTATGATGAGCAGAAGAAGAAGCTGTAGAAACAAAGC
ATCTCTAATGAACAAATGGGATCCACCAAAGAAAACAACAAGAAAGCAAG
CTATTGGATGCTTCACGTTTGTAACCAGCAGAATTACGATTGAAGGACTG
CTGAAGAGAAAGTACTATCCTAGGCTGAAACTAATATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007789DUF688