rna-XM_004496659.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004496659.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:7977774-7978370 REVERSE LENGTH=198) HSP 1 Score: 172.17 bits (435), Expect = 2.330e-54 Identity = 107/206 (51.94%), Postives = 133/206 (64.56%), Query Frame = 0 Query: 1 MILCSIEKETLI-LLLILLVVQSSVALNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGI----GEVRTHTVEIHPGVTKIVVRDG--ESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQ---NVEGGDSDRDMGGRLVLVQ 196 MIL ++ ++L LL+L ++QS N +M+VHP+PR N T+ + T GK LRRLPH+F+RVLELP RS+ADVAVEE DCFRFVAET G+ GE+R + VEIHPG+TKIVVR SL LSLD+LELD+WRFRLP+ST PEL + VDG+LIVTVPK + + G GRLVLVQ Sbjct: 1 MILIPVKIQSLFSYLLLLNLIQSIDKPNPEAMRVHPIPRNINNTLIHHHHHNPTRE--------PGKNLRRLPHIFNRVLELPLRSEADVAVEERHDCFRFVAETVGLCNGDGEMRAYMVEIHPGITKIVVRTNGSSSLGLSLDELELDVWRFRLPESTRPELVTVACVDGDLIVTVPKNAEEEDDDGGGGDFGQGIGSGRLVLVQ 198
BLAST of rna-XM_004496659.3 vs. Araport11
Match: | (Symbols: HSP1 | heat shock protein 20-like protein 1 | chr4:8510983-8511441 FORWARD LENGTH=152) HSP 1 Score: 158.688 bits (400), Expect = 1.014e-49 Identity = 92/150 (61.33%), Postives = 105/150 (70.00%), Query Frame = 0 Query: 31 MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETE--GIGEVRTHTVEIHPGVTKIVVRDG--ESLELSLDQLELDMWRFRLPDSTMPELASA-VFVDGELIVTVPKGHD 175 MK+HP+PR N N A+ GKKLRRLPH+FSRVLELP +SDADVAVEE+ DCFRFVAET+ G G VR + VEIHPGVTKI+VR SL LSLD+LELD+WRFRLP+ST PEL + DGELIVTVPK D Sbjct: 1 MKIHPLPR--------NENNNNLIHHARDPTREPGKKLRRLPHIFSRVLELPLKSDADVAVEESHDCFRFVAETDGGGGGGVRAYMVEIHPGVTKILVRTNGSSSLGLSLDELELDVWRFRLPESTRPELVTVDCDGDGELIVTVPKIED 142
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y098|A0A1S2Y098_CICAR (Uncharacterized protein LOC101514677 OS=Cicer arietinum OX=3827 GN=LOC101514677 PE=4 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 5.935e-139 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 Query: 1 MILCSIEKETLILLLILLVVQSSVALNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVEGGDSDRDMGGRLVLVQ 196 MILCSIEKETLILLLILLVVQSSVALNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVEGGDSDRDMGGRLVLVQ Sbjct: 1 MILCSIEKETLILLLILLVVQSSVALNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVEGGDSDRDMGGRLVLVQ 196
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A396JUM2|A0A396JUM2_MEDTR (SHSP domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0205281 PE=4 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 1.442e-108 Identity = 167/197 (84.77%), Postives = 177/197 (89.85%), Query Frame = 0 Query: 1 MILCSIEKETLILLLILLVVQSSVALNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVE-GGDSDRDMGGRLVLVQ 196 MIL SI+ + L ++LILLVVQSSVAL MK+HPVPRKRNITIQFGT+ GN +SEAQ LLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEA DCFRFVAETEGIGEVR HTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDST+PELASAVFVDGELIVTVPKGH++QNVE GG GGRLVLVQ Sbjct: 1 MILSSIQNQNLFVILILLVVQSSVALK---MKIHPVPRKRNITIQFGTDAGNPSSEAQTLLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAADCFRFVAETEGIGEVRAHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTLPELASAVFVDGELIVTVPKGHEVQNVEGGGGMGGGGGGRLVLVQ 194
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MHS7|A0A8B8MHS7_ABRPR (Uncharacterized protein LOC113873337 OS=Abrus precatorius OX=3816 GN=LOC113873337 PE=3 SV=1) HSP 1 Score: 305.064 bits (780), Expect = 3.430e-103 Identity = 162/196 (82.65%), Postives = 176/196 (89.80%), Query Frame = 0 Query: 1 MILCSIEKETLILLLILLVVQSSVALNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVEGGDSDRDMGGRLVLVQ 196 MIL SI K LI+ L++LVVQSS A +G+ MKVHPVPRKRNITIQFG +GGN SEAQALLG++GKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAET+GIG VR +TVEIHPGVTKIVVRDGES+ELSLDQLELDMWRFRLP+ST PELASAVFVDGELIVTVPKG + +N E GD DR MGGRLVLVQ Sbjct: 1 MILSSIGKFALIITLLILVVQSSAAFHGDIMKVHPVPRKRNITIQFGVDGGNPMSEAQALLGVAGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETDGIGNVRAYTVEIHPGVTKIVVRDGESVELSLDQLELDMWRFRLPESTRPELASAVFVDGELIVTVPKGDEEENREDGDGDRGMGGRLVLVQ 196
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3P4V5|A0A2K3P4V5_TRIPR (SHSP domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g006896 PE=4 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 1.283e-100 Identity = 152/167 (91.02%), Postives = 158/167 (94.61%), Query Frame = 0 Query: 31 MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVE-GGDSDRDMGGRLVLVQ 196 MK+HPVPRKRNITIQFGT+GGN +SEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAET+GIGEVRTHTVEIHPGV KIVVRDGESLELSLDQLELDMWRFRLPDST+PELASAVFVDGELIVTVPKGHDLQNVE G + GGRLVLVQ Sbjct: 1 MKIHPVPRKRNITIQFGTDGGNPSSEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETDGIGEVRTHTVEIHPGVVKIVVRDGESLELSLDQLELDMWRFRLPDSTLPELASAVFVDGELIVTVPKGHDLQNVEGGDNGRGMGGGRLVLVQ 167
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P050|A0A2Z6P050_TRISU (SHSP domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_46150 PE=4 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 2.268e-98 Identity = 140/149 (93.96%), Postives = 146/149 (97.99%), Query Frame = 0 Query: 31 MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNV 179 MK+HPVPRKRNITIQFGT+GGN +SEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEE PDCFRFVAET+GIGEVRTHTVEIHPGV KIVVRDGESLELSLDQLE+DMWRFRLPDST+PELASAVFVDGELIVTVPKGHDLQNV Sbjct: 1 MKIHPVPRKRNITIQFGTDGGNPSSEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEEPDCFRFVAETDGIGEVRTHTVEIHPGVVKIVVRDGESLELSLDQLEIDMWRFRLPDSTLPELASAVFVDGELIVTVPKGHDLQNV 149
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VPF4|A0A072VPF4_MEDTR (Heat shock 22 kDa protein OS=Medicago truncatula OX=3880 GN=25485194 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 8.453e-98 Identity = 149/167 (89.22%), Postives = 155/167 (92.81%), Query Frame = 0 Query: 31 MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVE-GGDSDRDMGGRLVLVQ 196 MK+HPVPRKRNITIQFGT+ GN +SEAQ LLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEA DCFRFVAETEGIGEVR HTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDST+PELASAVFVDGELIVTVPKGH++QNVE GG GGRLVLVQ Sbjct: 1 MKIHPVPRKRNITIQFGTDAGNPSSEAQTLLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAADCFRFVAETEGIGEVRAHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTLPELASAVFVDGELIVTVPKGHEVQNVEGGGGMGGGGGGRLVLVQ 167
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A165D0X1|A0A165D0X1_PHAVU (Nodulin 22 OS=Phaseolus vulgaris OX=3885 GN=Nod22 PE=2 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 8.646e-96 Identity = 153/200 (76.50%), Postives = 168/200 (84.00%), Query Frame = 0 Query: 6 IEKETLILLLIL----LVVQSSVALNGNS---MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISG-KKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVEGGDSDRDM-GGRLVLVQ 196 I+K +LI ++I+ LV+QSS A + + MKVHPVPRKRNI+IQFG +GGN SEAQALLGI+G KKLRRLPHVFS VLELPFRSDADV VEE PDCFRFVAETEGIG+VR HT+EIHPGVTKIVVRDG S+ELSLDQLELDMWRFRLP+ST PELASAVFVDGELIVTVPKGH E GD DR M GGRLVLVQ Sbjct: 2 IQKVSLIFIVIIAVLILVLQSSAAFHSSKNSIMKVHPVPRKRNISIQFGVDGGNPMSEAQALLGIAGSKKLRRLPHVFSCVLELPFRSDADVVVEEDPDCFRFVAETEGIGDVRAHTIEIHPGVTKIVVRDGGSVELSLDQLELDMWRFRLPESTRPELASAVFVDGELIVTVPKGH---GEEDGDGDRVMGGGRLVLVQ 198
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445F543|A0A445F543_GLYSO (SHSP domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_054139 PE=4 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 3.236e-95 Identity = 144/176 (81.82%), Postives = 159/176 (90.34%), Query Frame = 0 Query: 6 IEKETLILLLIL-LVVQSSVALNGNS--MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQN 178 IEK L+++ +L LVVQSS A +G + MKVHPVPRKRNI+IQFG +GGN SEAQALLGI+GKKLRRLPHVFS VLELPFRSDADVAVEEAPDCFRFVAET+GIG+VR HTVEIHPGVTKIVVRDG S+ELSLDQLELDMWRFRLP+ST PELASAVFVDGELIVTVPKGH+ +N Sbjct: 2 IEKVPLVIIAVLILVVQSSAAFHGINRIMKVHPVPRKRNISIQFGGDGGNPMSEAQALLGIAGKKLRRLPHVFSCVLELPFRSDADVAVEEAPDCFRFVAETDGIGDVRAHTVEIHPGVTKIVVRDGGSVELSLDQLELDMWRFRLPESTRPELASAVFVDGELIVTVPKGHEEEN 177
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|I1NGG3|I1NGG3_SOYBN (SHSP domain-containing protein OS=Glycine max OX=3847 GN=100808440 PE=4 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 3.236e-95 Identity = 144/176 (81.82%), Postives = 159/176 (90.34%), Query Frame = 0 Query: 6 IEKETLILLLIL-LVVQSSVALNGNS--MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQN 178 IEK L+++ +L LVVQSS A +G + MKVHPVPRKRNI+IQFG +GGN SEAQALLGI+GKKLRRLPHVFS VLELPFRSDADVAVEEAPDCFRFVAET+GIG+VR HTVEIHPGVTKIVVRDG S+ELSLDQLELDMWRFRLP+ST PELASAVFVDGELIVTVPKGH+ +N Sbjct: 2 IEKVPLVIIAVLILVVQSSAAFHGINRIMKVHPVPRKRNISIQFGGDGGNPMSEAQALLGIAGKKLRRLPHVFSCVLELPFRSDADVAVEEAPDCFRFVAETDGIGDVRAHTVEIHPGVTKIVVRDGGSVELSLDQLELDMWRFRLPESTRPELASAVFVDGELIVTVPKGHEEEN 177
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Match: tr|A0A151U6V2|A0A151U6V2_CAJCA (SHSP domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_007715 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 2.584e-94 Identity = 141/172 (81.98%), Postives = 157/172 (91.28%), Query Frame = 0 Query: 6 IEKE-TLILLLILLVVQSSVA-LNGNSMKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLELPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGESLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHD 175 IEK ++I+ +++LVVQSS A + GN MKVHPVPRKRNI+IQFG +GGN SEAQALLGI+GKKLRRLPHVFS VLELPFRSDADVAVEEA DCFRFVAET+GIG+VR HTVEIHPGVTKIVVR+G S+ELSLDQLELDMWRFRLP+ST PELASAVFVDGELIVTVPKGH+ Sbjct: 2 IEKAPSIIIAVLILVVQSSAASVQGNIMKVHPVPRKRNISIQFGVDGGNPMSEAQALLGIAGKKLRRLPHVFSCVLELPFRSDADVAVEEAADCFRFVAETDGIGDVRAHTVEIHPGVTKIVVREGGSVELSLDQLELDMWRFRLPESTRPELASAVFVDGELIVTVPKGHE 173 The following BLAST results are available for this feature:
BLAST of rna-XM_004496659.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_004496659.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004496659.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004496659.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496659.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496659.3; organism=Cicer arietinum; type=mRNA; length=591bpback to top protein sequence of rna-XM_004496659.3_CaCDCfrontier-NCBI_v1 >rna-XM_004496659.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496659.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496659.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=196bpback to top mRNA from alignment at chr4:13634362..13635527+ Legend: mRNAexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004496659.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496659.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496659.3; organism=Cicer arietinum; type=mRNA; length=1166bp; location=Sequence derived from: chr4:13634362..13635527+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:13634362..13635527+ >rna-XM_004496659.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496659.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496659.3; organism=Cicer arietinum; type=CDS; length=591bp; location=Sequence derived from: chr4:13634362..13635527+ (Cicer arietinumback to top |