rna-XM_004497035.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004497035.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:25702041-25702322 FORWARD LENGTH=93) HSP 1 Score: 54.6842 bits (130), Expect = 1.572e-10 Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 0 Query: 81 PWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLN 127 W GGVV E+++W S W P WD++++G + L++DVVWDDDIWN++ Sbjct: 42 CWGGGVV-EEITWSSVWLPFWDVEFVGRNYGVLFNDVVWDDDIWNIH 87
BLAST of rna-XM_004497035.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:8919087-8919410 FORWARD LENGTH=107) HSP 1 Score: 53.5286 bits (127), Expect = 7.379e-10 Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 0 Query: 85 GVVDEQMSWGSNWFPD-WDMDYMGEAFNDLYSDVVWDDDIWNLN 127 GVVDE M+W + W P WD++++ + + LY+DVVWDDD+WNLN Sbjct: 54 GVVDELMTWNTVWLPSCWDVEFVEKNYGVLYNDVVWDDDLWNLN 97
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XZW5|A0A1S2XZW5_CICAR (Uncharacterized protein LOC101498936 OS=Cicer arietinum OX=3827 GN=LOC101498936 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 1.907e-98 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 Query: 1 MKRQRGVNGVNNTNNPHPNVEEVATLGKKKGKKESEQRVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEWE 142 MKRQRGVNGVNNTNNPHPNVEEVATLGKKKGKKESEQRVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEWE Sbjct: 1 MKRQRGVNGVNNTNNPHPNVEEVATLGKKKGKKESEQRVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEWE 142
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VQB5|A0A072VQB5_MEDTR (Transmembrane protein OS=Medicago truncatula OX=3880 GN=25485493 PE=4 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 2.221e-54 Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 0 Query: 1 MKRQRG--VNGVNNTNNPHPNVEEVATLGKKKGKKESEQRVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFND-LYSDVVWDDDIWNLNKEIPIPLHGMRFEWE 142 MKRQRG VNGVNN N PNVE+V +GKKKGK+E EQ++ EE RKEN+D+S+G TTTI++GV+ WN E+YMPWLGGVVDEQMSWGS WFP WDMD+MGEAFN+ LY+DVVW+DDIWNL +IPIPLHG RFE E Sbjct: 1 MKRQRGASVNGVNNPKN-LPNVEDVVAMGKKKGKQEGEQKMEKEE-RKENRDISEG----TTTIREGVN------WNWEEYMPWLGGVVDEQMSWGSTWFPGWDMDFMGEAFNNALYNDVVWEDDIWNLKNQIPIPLHGKRFELE 133
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MU23|A0A2K3MU23_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g017428 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 4.161e-50 Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 0 Query: 1 MKRQRGV---NGVNNTNNPHPNVEE-VATLGKKKGKKESEQRVVVEEKRKENKDMSD--GKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEWE 142 MKRQRG N +N NP PNVE+ V+T+GKKKGKKE EQ++ E +RKE+KDM++ + TTTT I++GV+ +NVM N E+YMPWLGGVVDEQMSWGS WFP WDMD+MGEAFN LYSDVVWDDDIWNL EIPIP+HG RFE E Sbjct: 1 MKRQRGASVNNAINTPKNP-PNVEDMVSTMGKKKGKKEGEQKMKEEMERKESKDMNELSQQATTTTIIREGVN-SNVMNCNYEEYMPWLGGVVDEQMSWGSTWFPGWDMDFMGEAFNSLYSDVVWDDDIWNLKNEIPIPVHGKRFELE 146
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MHJ3|A0A8B8MHJ3_ABRPR (Uncharacterized protein LOC113873288 OS=Abrus precatorius OX=3816 GN=LOC113873288 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.108e-47 Identity = 90/147 (61.22%), Postives = 103/147 (70.07%), Query Frame = 0 Query: 1 MKRQRGVN--GVNNTNNPHPNVEEVATLGKKKGKKESEQ----RVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEW 141 MKRQRGVN GVN N P VE+VA + KK K+ + + VVEE+RKE++DM + G N VMGWN E+YMPWLGGVVDEQMSWGS WFP WDMD++GEAF LYSDVVWDDDIWNLNK+IPIPL MRF W Sbjct: 1 MKRQRGVNVNGVNPMNMNRPIVEDVAAVMGKKKAKKEGEQKVVKSVVEEERKESRDM----MMVGGLVHHGARDNVVMGWNWEEYMPWLGGVVDEQMSWGSTWFPGWDMDFLGEAFGALYSDVVWDDDIWNLNKQIPIPLDRMRFNW 143
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WHB9|A0A9D4WHB9_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_066108 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 3.855e-45 Identity = 95/153 (62.09%), Postives = 112/153 (73.20%), Query Frame = 0 Query: 1 MKRQRG--VNGVNNTNNPHPNVEEVATL---GKKKGKKESEQRV-VVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWN-LEDYMP-WLGG--VVDEQMSWGSNWFPDWDMDYM-GEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEWE 142 MKRQRG VN +NN NP PNVE+VA K K ++ EQ+V ++ E++KE KDM + TTTI++GV +NVM WN E+YMP WLGG +VDEQMSWGS WFP WDMD+M GEAFN LYSDVVWDDDIWNL EIPIPLHG +FE E Sbjct: 1 MKRQRGASVNSLNNLKNP-PNVEDVAATMEKKKGKKEEHDEQKVSMLLEEKKEIKDMCE----ETTTIREGVISSNVMSWNNREEYMPSWLGGSSIVDEQMSWGSTWFPGWDMDFMMGEAFNSLYSDVVWDDDIWNLKNEIPIPLHGKKFELE 148
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LWW2|A0A2Z6LWW2_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_50440 PE=4 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.819e-44 Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 0 Query: 1 MKRQRGV---NGVNNTNNPHPNVEE--VATLGKKKGKKESEQRVVVEEKRKENKDMSD-GKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEWE 142 MKRQRG N +N NP PNVE+ VAT+GKKKGKKE E ++ E ++KE+K+MS+ + T TTI++GV+ +NVM NLE+YMPWLGGVVDEQMSWGS WFP WDMD+MGE+FN LYSDVVW+DDIWNL EIPIP++G RFE E Sbjct: 1 MKRQRGASVNNAINTPKNP-PNVEDMVVATMGKKKGKKEGEHKMKEEVEKKESKEMSELSQQATITTIREGVN-SNVMTCNLEEYMPWLGGVVDEQMSWGSTWFPGWDMDFMGESFNSLYSDVVWEDDIWNLKNEIPIPVNGKRFELE 146
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4QWK3|A0A6A4QWK3_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr02g0145961 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 7.170e-36 Identity = 76/136 (55.88%), Postives = 90/136 (66.18%), Query Frame = 0 Query: 1 MKRQRGVNGVNNTNNPHPNVEEVATLGKKKGKKESEQRVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYMPWLGGVVDEQMSWGSNWFPDWDMDYMGEAFNDLYSDVVWDDDIWNLNKEIPIPLHG 136 MKRQRG N NP P VE+VA +K K + E V + + + +T ++ G +NVMGWN E+YMPWLGGVVDEQMSWGS WFP WDMD+ GEAF+ LY DVVWDDDIWNLNKEIPI +HG Sbjct: 1 MKRQRGGN-----VNP-PKVEDVAANAMRKKKTKKEVEQEVVKVEE--------RIESTREVEQG-GWDNVMGWNWEEYMPWLGGVVDEQMSWGSTWFPWWDMDFNGEAFSSLYCDVVWDDDIWNLNKEIPITIHG 121
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N4A5|A0A4D6N4A5_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3652 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.925e-34 Identity = 85/152 (55.92%), Postives = 102/152 (67.11%), Query Frame = 0 Query: 1 MKRQRGV--NGVNNTNNPHPNVEEVATLGKKKGKKESE----QRVVVEEKRKEN-KDMSDGKTTTTTTIKDGVSINNVMGWNLEDY---MPWLGGVVDEQMSWGSNWFPDWDMDYMG-EAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEW 141 MKRQRGV N V N PNVE+V +GKKK KKE E + VV +E+RKE+ +DM G +DG +MGWN E+ +PWL GVVDEQMSWGS W P WDMD++G +AF DLY+DVVWDDDIWNLN +IPIPL RF+W Sbjct: 1 MKRQRGVAVNAVVMPTNNPPNVEDVTAMGKKKVKKEGEQKVGKSVVEDEERKESSRDMVGGFLQQQQGARDG----GMMGWNWEENNQNIPWLRGVVDEQMSWGSTWVPAWDMDFLGGDAFTDLYNDVVWDDDIWNLNNQIPIPLDTKRFDW 148
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2P8P0|A0A0B2P8P0_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_028309 PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 4.491e-33 Identity = 79/147 (53.74%), Postives = 97/147 (65.99%), Query Frame = 0 Query: 1 MKRQRGVNGVNNT----NNPHPNVEEVAT--LGKKKGKKESEQRV----VVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDYM--PWLGGVVDEQMSWGSNWFPDWDMDYM-GEAFNDLYSDVVWDDDIWNLNKEIPIPL 134 MKRQRGV+ VN NN PNVE+VA +GKKK KKE EQ+V V EE+ KE+ + + ++ +MGWN E+ M P +GGVVDEQMSWGS WFP WDMD + G+AF LY+DV+WDDDIWNLN +IPIPL Sbjct: 1 MKRQRGVH-VNAVRPIMNNNPPNVEDVAAAAMGKKKVKKEDEQKVGNIMVEEEEIKESS--TSRNSMVGGYLQQHQQGGMLMGWNWEENMNMPLVGGVVDEQMSWGSTWFPGWDMDLLGGDAFTALYNDVLWDDDIWNLNNQIPIPL 144
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V5K3|A0A1S3V5K3_VIGRR (Uncharacterized protein LOC106771926 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771926 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.777e-31 Identity = 80/152 (52.63%), Postives = 96/152 (63.16%), Query Frame = 0 Query: 1 MKRQRGV--NGVNNTNNPHPNVEEVATLGKKKGKKE-----SEQRVVVEEKRKENKDMSDGKTTTTTTIKDGVSINNVMGWNLEDY---MPWLGGVVDEQMSWGSNWFPDWDMDYMG-EAFNDLYSDVVWDDDIWNLNKEIPIPLHGMRFEW 141 MKRQRGV N V N PNV++V GKKK KKE + V VEE+++ + DM G G +MGWN E+ +PWL GVVDEQMSWGS W P WDMD++G +AF DLY+DVVWDDDIWNLN +IPIPL RF+W Sbjct: 1 MKRQRGVTVNAVVMPMNNPPNVDDVTATGKKKVKKEGEQKVGKSVVEVEERKESSIDMVGGFLQQQQQ---GARDGGMMGWNWEENNQNIPWLRGVVDEQMSWGSTWVPAWDMDFLGGDAFTDLYNDVVWDDDIWNLNNQIPIPLDRKRFDW 149 The following BLAST results are available for this feature:
BLAST of rna-XM_004497035.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_004497035.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004497035.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004497035.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497035.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497035.3; organism=Cicer arietinum; type=mRNA; length=429bpback to top protein sequence of rna-XM_004497035.3_CaCDCfrontier-NCBI_v1 >rna-XM_004497035.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497035.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497035.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=142bpback to top mRNA from alignment at chr4:16241306..16242225+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004497035.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497035.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497035.3; organism=Cicer arietinum; type=mRNA; length=920bp; location=Sequence derived from: chr4:16241306..16242225+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:16241306..16242225+ >rna-XM_004497035.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497035.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497035.3; organism=Cicer arietinum; type=CDS; length=429bp; location=Sequence derived from: chr4:16241306..16242225+ (Cicer arietinumback to top |