rna-XM_004497546.3
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Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-XM_004497546.3 vs. Araport11
Match: | (Symbols: ATPSK3, PSK3, PSK1 | PHYTOSULFOKINE 3 PRECURSOR | chr3:16291388-16292118 REVERSE LENGTH=81) HSP 1 Score: 64.6994 bits (156), Expect = 3.503e-15 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 Query: 47 SSTELKED-MQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHK 91
S+T ++ED + +LMG E C E DEEC RRRM+ E+HLDYIYTQHHK
Sbjct: 35 SATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
BLAST of rna-XM_004497546.3 vs. Araport11
Match: | (Symbols: ATPSK3, PSK3, PSK1 | PHYTOSULFOKINE 3 PRECURSOR | chr3:16291388-16292118 REVERSE LENGTH=81) HSP 1 Score: 64.6994 bits (156), Expect = 3.503e-15 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 Query: 47 SSTELKED-MQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHK 91
S+T ++ED + +LMG E C E DEEC RRRM+ E+HLDYIYTQHHK
Sbjct: 35 SATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
BLAST of rna-XM_004497546.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LA14|PSK6_ARATH (Putative phytosulfokines 6 OS=Arabidopsis thaliana OX=3702 GN=PSK6 PE=2 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 3.369e-14 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 Query: 47 SSTELKED-MQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHK 91
S+T ++ED + +LMG E C E DEEC RRRM+ E+HLDYIYTQHHK
Sbjct: 35 SATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
BLAST of rna-XM_004497546.3 vs. UniProtKB/Swiss-Prot
Match: sp|O81277|PSK5_ORYSJ (Phytosulfokines 5 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK5 PE=1 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 2.829e-7 Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0 Query: 47 SSTELKEDMQELMGSEE------CYEKDEECFRRRMIAEAHLDYIYTQ 88
+T +++ ELMG+ E C E +EEC RRM+ +AHLDYIYTQ
Sbjct: 50 GATGNGDEVSELMGAAEEEAAGLCEEGNEECVERRMLRDAHLDYIYTQ 97
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y275|A0A1S2Y275_CICAR (Phytosulfokine OS=Cicer arietinum OX=3827 GN=LOC101514134 PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 9.832e-62 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 Query: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP
Sbjct: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4W4E4|A0A9D4W4E4_PEA (Phytosulfokine (Fragment) OS=Pisum sativum OX=3888 GN=KIW84_062166 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.273e-43 Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 0 Query: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MKHQILL F +LILSSF+AS LVPPN SKHGEKEL V I +SSTE+KEDM++LMGSEEC EKDEECF RRMIAEAHLDYIYTQHHKP
Sbjct: 39 MKHQILLFFFVLILSSFFASARFLVPPNASKHGEKELKV----IGKSSTEMKEDMEQLMGSEECSEKDEECFSRRMIAEAHLDYIYTQHHKP 126
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VKD5|A0A072VKD5_MEDTR (Phytosulfokine OS=Medicago truncatula OX=3880 GN=25483890 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.829e-38 Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 0 Query: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEK-ELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MKHQI++LF ++ILSSF ASP L+VPPNGS+HGEK EL ++ NTI QSSTE+KEDM++LMG EECYEKDEEC RRM E HLDYIYTQHHKP
Sbjct: 1 MKHQIIILFFVIILSSFLASPRLIVPPNGSRHGEKKELKIIGNTIAQSSTEVKEDMEQLMGLEECYEKDEECLSRRMNMETHLDYIYTQHHKP 93
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SN50|A0A0B2SN50_GLYSO (Phytosulfokine OS=Glycine soja OX=3848 GN=glysoja_036831 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.153e-30 Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 0 Query: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MK QI LLF +L+LSSF AS LL P G + GEKE+ + +N PQSS ELK+DM+ELMGSEECY KDEEC RRM+ EAHLDYIYTQHHKP
Sbjct: 1 MKQQIGLLFFVLLLSSFLASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 92
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|Q7PCB2|Q7PCB2_SOYBN (Phytosulfokine OS=Glycine max OX=3847 GN=PSK3 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.153e-30 Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 0 Query: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MK QI LLF +L+LSSF AS LL P G + GEKE+ + +N PQSS ELK+DM+ELMGSEECY KDEEC RRM+ EAHLDYIYTQHHKP
Sbjct: 1 MKQQIGLLFFVLLLSSFLASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 92
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|K7LHS9|K7LHS9_SOYBN (Phytosulfokine OS=Glycine max OX=3847 GN=GLYMA_10G066400 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.047e-28 Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 0 Query: 1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MK QI LLF +L+LSSF AS LL P G + GEKE+ + +N PQSS ELK+DM+ELMGSEECY KDEEC RRM+ EAHLDYIYTQHHKP
Sbjct: 79 MKQQIGLLFFVLLLSSFLASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 170
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445IIT0|A0A445IIT0_GLYSO (Phytosulfokine OS=Glycine soja OX=3848 GN=D0Y65_026208 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.565e-28 Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0 Query: 19 ASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
AS LL P G + GEKE+ + +N PQSS ELK+DM+ELMGSEECY KDEEC RRM+ EAHLDYIYTQHHKP
Sbjct: 71 ASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 144
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5N3B0|A0A6A5N3B0_LUPAL (Phytosulfokine OS=Lupinus albus OX=3870 GN=Lal_00038059 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.585e-28 Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 0 Query: 1 MKHQILL-LFSLLILSSFYASPH-LLVPPNGSKHGEKELNVVDNTIPQS-STELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
MKH+I+L F LLILSSF AS LLVP G+K GEK V N + Q+ + +L + M+EL+ S++C EKDEECF RRMIAEAHLDYIYT+HHKP
Sbjct: 1 MKHKIVLPFFVLLILSSFLASARDLLVPSKGTKQGEKVEKVNGNILGQAYAADLTDHMEELIDSKKCNEKDEECFIRRMIAEAHLDYIYTEHHKP 95
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|V7BKX7|V7BKX7_PHAVU (Phytosulfokine OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G223100g PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 5.955e-26 Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 0 Query: 19 ASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
AS LL PP + GE+E+ V DN I QSS +L +DM+ELMGSEECY KDE C RRM+ +AHLDYIYTQ+HKP
Sbjct: 95 ASARLLQPPKAPRQGEREVEVNDNAISQSSLQLNDDMEELMGSEECYVKDEACSSRRMMVDAHLDYIYTQYHKP 168
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1AQT4|A0A6J1AQT4_9ROSI (Phytosulfokine OS=Herrania umbratica OX=108875 GN=LOC110420543 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.952e-25 Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 0 Query: 6 LLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQS---STELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
LLF+ L L S+ S LL K GEKEL N I Q+ +T++KED LMGSEECYEKDEEC +RRMIAEAHLDYIYTQHHKP
Sbjct: 11 FLLFAFL-LCSYSTSARLL----AQKQGEKELKA--NQINQAGLLATDVKEDFSNLMGSEECYEKDEECLKRRMIAEAHLDYIYTQHHKP 93 The following BLAST results are available for this feature:
BLAST of rna-XM_004497546.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 2 Position : 0 Zoom : x 1
BLAST of rna-XM_004497546.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3; organism=Cicer arietinum; type=mRNA; length=279bpback to top protein sequence of rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 >rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=92bpback to top mRNA from alignment at chr4:22160276..22161174- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3; organism=Cicer arietinum; type=mRNA; length=899bp; location=Sequence derived from: chr4:22160276..22161174- (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:22160276..22161174- >rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3; organism=Cicer arietinum; type=CDS; length=279bp; location=Sequence derived from: chr4:22160276..22161174- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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