rna-XM_004497608.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1931016-1931711 REVERSE LENGTH=231) HSP 1 Score: 142.124 bits (357), Expect = 5.665e-42 Identity = 82/193 (42.49%), Postives = 112/193 (58.03%), Query Frame = 0 Query: 17 LFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 + ++I+ +LI I +L+ + LIIWLI +P A KF V +AKLT+F L+ N LRYNL LNFT RNPN+++ +YYD++E Y RF ++ I+ F Q K+T + G+++V+ D D D I+RID KL IRF+ G K IKC L VP SN T F VF+PT CDV F Sbjct: 44 ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFT-LDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNIS---KFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGF-VFQPTKCDVDF 231
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:14905788-14906504 FORWARD LENGTH=238) HSP 1 Score: 141.354 bits (355), Expect = 1.322e-41 Identity = 72/196 (36.73%), Postives = 114/196 (58.16%), Query Frame = 0 Query: 14 CC--CLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDV 207 CC CL NII +LI +++ + ++ LI+W I++P KF V EA LT+F + ++ L YN+ LNF+ RNPN++L I+YD++E Y RF++ + + SF Q K+T + +G+++V+ DF D++ G++RIDVKL F +RF+ G + IKC L VP ++ + F PT C V Sbjct: 45 CCGGCLVNIICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYDQLEVRGYYGDQRFSAAN----MTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQFHPTKCHV 236
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: NHL10, ATNHL10, YLS9 | NDR1/HIN1-LIKE, ARABIDOPSIS NDR1/HIN1-LIKE 10, YELLOW-LEAF-SPECIFIC GENE 9 | chr2:15110635-15111318 FORWARD LENGTH=227) HSP 1 Score: 140.584 bits (353), Expect = 1.957e-41 Identity = 64/176 (36.36%), Postives = 104/176 (59.09%), Query Frame = 0 Query: 8 NRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKC 183 R C CCL ++ K++I++I+++ + LI WLIV+PRA KF V +A LT+F++ + +N LRYNL L RNPNK++ +YYD++E H Y+G RF++ L F Q K+T + F G+ +V+F+ ++ G++ I++K +RF+LGD K + C Sbjct: 28 GHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTIT----LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676264-3676986 REVERSE LENGTH=240) HSP 1 Score: 130.183 bits (326), Expect = 3.434e-37 Identity = 75/197 (38.07%), Postives = 114/197 (57.87%), Query Frame = 0 Query: 12 RCC-CCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKC-GLDVPFGSNGTKVFNVFEPTTCD 206 RCC CC+ ++I +LIA+ +++ + LI+WLI +P A KF V +A L +F++ NNN L Y+L LNFT RNPN+++ +YYD+ Y RF S +V +SF Q K+T + G+ +VV +D + D+K GI+RI+ KL ++RF+ K IKC L +P GS+ + F+P CD Sbjct: 45 RCCGCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNN-LHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANV----SSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQCD 236
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: NHL26 | NDR1/HIN1-like 26 | chr5:21808072-21808713 REVERSE LENGTH=213) HSP 1 Score: 83.5741 bits (205), Expect = 1.236e-19 Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = 0 Query: 32 VVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNN-NTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSN-GTKVFNVFEPTTCDVT 208 ++LII ++WLI+ P +FS+ EA + N ++ + L ++ L ++NPNKK+ IYYDK+ + +Y G + S L F Q + N + G + V Q+ G R++ G I +K+ +R+++G ++ G + N+ C V FG N T + T C T Sbjct: 38 LLLIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEAS---LPPFYQSHEEINLLTAFLQGTELPV-AQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFGMNMTTPPLASLQGTRCSTT 212
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: ATSYP24, SYP24 | SYNTAXIN 24 | chr1:11642593-11644793 FORWARD LENGTH=342) HSP 1 Score: 80.4925 bits (197), Expect = 8.399e-18 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 0 Query: 42 IVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSM--NGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFG---SNGT 194 +V+ KF V +A+LT F+ L +NN L+Y+L LN + RN + I+YD+ E V Y R + + + Y S N+M +F G+ +V+ N FE D+K G++RIDVKL R + + K ++C L +P SN T Sbjct: 1 MVRSNDVKFQVYDAELTHFD-LESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLF------YLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSNST 151
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: ATSYP24, SYP24 | SYNTAXIN 24 | chr1:11642593-11644962 FORWARD LENGTH=416) HSP 1 Score: 79.7221 bits (195), Expect = 2.433e-17 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 0 Query: 42 IVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSM--NGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFG---SNGT 194 +V+ KF V +A+LT F+ L +NN L+Y+L LN + RN + I+YD+ E V Y R + + + Y S N+M +F G+ +V+ N FE D+K G++RIDVKL R + + K ++C L +P SN T Sbjct: 1 MVRSNDVKFQVYDAELTHFD-LESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLF------YLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSNST 151
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3679031-3679660 REVERSE LENGTH=209) HSP 1 Score: 74.3294 bits (181), Expect = 3.217e-16 Identity = 50/178 (28.09%), Postives = 89/178 (50.00%), Query Frame = 0 Query: 20 IIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNN-NTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKV 196 I W + I ++ ++ L IL+IW I+QP +F +++A + FN N N L N + ++RNPN K+ IYYD+++ + +Y R T + Q K + + G V + N G + DK +G+ + ++ +R+++G FI G ++KC + FG+ V Sbjct: 18 IFWSI-IFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATY---RSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFN-GVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGV 190
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: NHL21 | | chr4:2685104-2685784 REVERSE LENGTH=226) HSP 1 Score: 70.0922 bits (170), Expect = 1.659e-14 Identity = 59/219 (26.94%), Postives = 100/219 (45.66%), Query Frame = 0 Query: 4 AQPNNR-------SRRCCCCLFNIIWKLLIAIIILVV----LIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGI--FRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 AQP R + R L I K + A+ +LV+ +I I+WL ++P +F +++ + + R + N T NPN+ + +Y+D +EG + Y R +I LN F Q +T + G +G + V + N ++F D+ G FR+D+ TIRF+L +I + + + C + V G +G + F C V F Sbjct: 18 AQPMKRHHSASYYAHRVRESLSTRISKFICAMFLLVLFFVGVIAFILWLSLRPHRPRFHIQDFVVQGLDQPTGVENAR--IAFNVTILNPNQHMGVYFDSMEGSIYYKDQRVG---LIPLLNPFFQQPTNTTIVTGTLTGASLTV-NSNRWTEFSNDRAQGTVGFRLDI--VSTIRFKLHRWISKHHRMHANCNIVV--GRDGL-ILPKFNHKRCPVYF 225
BLAST of rna-XM_004497608.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:22807440-22808114 REVERSE LENGTH=224) HSP 1 Score: 68.5514 bits (166), Expect = 5.406e-14 Identity = 42/168 (25.00%), Postives = 85/168 (50.60%), Query Frame = 0 Query: 20 IIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDV 187 +I + +++++ + +I I+W+ +QP + ++ ++ + + T ++ TA NPN+ + IYYD +EG V Y R ST + N F Q K+T+S++G S + V +++ + ERD+ G +K+ IRF++ + K C +++ Sbjct: 43 LICAIFLSLLLCLGIITFILWISLQPHRPRVHIRGFSISGLSRPDGFET--SHISFKITAHNPNQNVGIYYDSMEGSVYYKEKRIGSTKLT---NPFYQDPKNTSSIDGALSRPAMAV-NKDRWMEMERDRNQGKIMFRLKVRSMIRFKVYTWHSKSHKMYASCYIEI 204
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FNH6|NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 5.437e-41 Identity = 82/193 (42.49%), Postives = 112/193 (58.03%), Query Frame = 0 Query: 17 LFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 + ++I+ +LI I +L+ + LIIWLI +P A KF V +AKLT+F L+ N LRYNL LNFT RNPN+++ +YYD++E Y RF ++ I+ F Q K+T + G+++V+ D D D I+RID KL IRF+ G K IKC L VP SN T F VF+PT CDV F Sbjct: 44 ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFT-LDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNIS---KFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGF-VFQPTKCDVDF 231
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SJ52|NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.878e-40 Identity = 64/176 (36.36%), Postives = 104/176 (59.09%), Query Frame = 0 Query: 8 NRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKC 183 R C CCL ++ K++I++I+++ + LI WLIV+PRA KF V +A LT+F++ + +N LRYNL L RNPNK++ +YYD++E H Y+G RF++ L F Q K+T + F G+ +V+F+ ++ G++ I++K +RF+LGD K + C Sbjct: 28 GHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTIT----LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SRN1|NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.301e-36 Identity = 75/197 (38.07%), Postives = 114/197 (57.87%), Query Frame = 0 Query: 12 RCC-CCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKC-GLDVPFGSNGTKVFNVFEPTTCD 206 RCC CC+ ++I +LIA+ +++ + LI+WLI +P A KF V +A L +F++ NNN L Y+L LNFT RNPN+++ +YYD+ Y RF S +V +SF Q K+T + G+ +VV +D + D+K GI+RI+ KL ++RF+ K IKC L +P GS+ + F+P CD Sbjct: 45 RCCGCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNN-LHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANV----SSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQCD 236
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FI03|NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.196e-18 Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = 0 Query: 32 VVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNN-NTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSN-GTKVFNVFEPTTCDVT 208 ++LII ++WLI+ P +FS+ EA + N ++ + L ++ L ++NPNKK+ IYYDK+ + +Y G + S L F Q + N + G + V Q+ G R++ G I +K+ +R+++G ++ G + N+ C V FG N T + T C T Sbjct: 38 LLLIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEAS---LPPFYQSHEEINLLTAFLQGTELPV-AQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFGMNMTTPPLASLQGTRCSTT 212
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C615|SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.391e-16 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 0 Query: 42 IVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSM--NGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFG---SNGT 194 +V+ KF V +A+LT F+ L +NN L+Y+L LN + RN + I+YD+ E V Y R + + + Y S N+M +F G+ +V+ N FE D+K G++RIDVKL R + + K ++C L +P SN T Sbjct: 1 MVRSNDVKFQVYDAELTHFD-LESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLF------YLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSNST 151
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SRN0|NHL1_ARATH (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.117e-15 Identity = 50/178 (28.09%), Postives = 89/178 (50.00%), Query Frame = 0 Query: 20 IIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNN-NTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKV 196 I W + I ++ ++ L IL+IW I+QP +F +++A + FN N N L N + ++RNPN K+ IYYD+++ + +Y R T + Q K + + G V + N G + DK +G+ + ++ +R+++G FI G ++KC + FG+ V Sbjct: 18 IFWSI-IFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATY---RSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFN-GVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGV 190
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SJ54|NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 8.234e-7 Identity = 39/151 (25.83%), Postives = 71/151 (47.02%), Query Frame = 0 Query: 36 ILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQN---MGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKC 183 I ++W+I+QP +F +++A + FN L+ N L N + +RN N ++ IYYD++ + +Y R + T + Q K N + G V + N +G + R I R D + +R+++G I G +++C Sbjct: 36 IFLVWIILQPTKPRFILQDATVYAFN-LSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVYATY---RNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGR----VRWKVGTLITGKYHLHVRC 178
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y176|A0A1S2Y176_CICAR (NDR1/HIN1-like protein 3 OS=Cicer arietinum OX=3827 GN=LOC101507504 PE=4 SV=1) HSP 1 Score: 426.402 bits (1095), Expect = 8.909e-151 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 Query: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF Sbjct: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VIT5|A0A072VIT5_MEDTR (Harpin-induced-like protein OS=Medicago truncatula OX=3880 GN=25483720 PE=4 SV=1) HSP 1 Score: 342.428 bits (877), Expect = 1.636e-117 Identity = 162/209 (77.51%), Postives = 183/209 (87.56%), Query Frame = 0 Query: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 MA AQP+NR RRCCCCLF IIWKLL+AII+L LIILI WL+VQPR FKFSVKEAKLT+FNY ++ NTL YNLVLNFTARNPNKKLNIYYD +EGH SY+GTRFAST VITWLNSFRQYTKSTN M+GVFSG+RVVVFD++ S+FERD+KDG+F I+VKL F +RFRLGD+IG +TKGNIKC LDVPF +NGTKV FEPTTCDV F Sbjct: 1 MAEAQPHNRGRRCCCCLFGIIWKLLLAIIVLAGLIILIFWLVVQPRTFKFSVKEAKLTKFNYSDDTNTLHYNLVLNFTARNPNKKLNIYYDVIEGHASYEGTRFASTKVITWLNSFRQYTKSTNPMSGVFSGQRVVVFDRDQVSNFERDEKDGVFHINVKLNFDMRFRLGDYIGPHTKGNIKCRLDVPFVANGTKVMKAFEPTTCDVNF 209
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D5A867|A0A9D5A867_PEA (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_062322 PE=4 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 4.363e-110 Identity = 167/209 (79.90%), Postives = 181/209 (86.60%), Query Frame = 0 Query: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 MA QP+NR RRCCCCLF+IIWKLL+AIIILV LI LI LIVQPRAFKFSVKEAKLTQFNY NTLRYNLVLNFTARNPNKKLN YYD+VEGHVSY GTRFASTD+ITWLNSFRQYTKSTN M+GVFSG+RVVVFDQ+ SDFE DKK+G+F IDVKLY +RFRLGD+I G K NIKCG+DVPF SNGTK+ N FEPTTCDV F Sbjct: 1 MAPVQPHNRCRRCCCCLFSIIWKLLLAIIILVGLIYLIFSLIVQPRAFKFSVKEAKLTQFNYTTTTNTLRYNLVLNFTARNPNKKLNFYYDEVEGHVSYHGTRFASTDIITWLNSFRQYTKSTNLMSGVFSGQRVVVFDQDQVSDFEHDKKEGVFHIDVKLYTKMRFRLGDYIFGDNKSNIKCGIDVPFCSNGTKLMNAFEPTTCDVHF 209
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4W7A8|A0A9D4W7A8_PEA (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_062321 PE=4 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 7.063e-97 Identity = 157/214 (73.36%), Postives = 179/214 (83.64%), Query Frame = 0 Query: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLN-----SFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 MA +Q +NRSRRCCCCLF+IIWKL+IAII +V LI L+++LI+QPR+FKFSVKEAKLTQFNY N NTL YNLVLNFTA NPNKKLNIYYD VEGHVSY GTRFAST++ +WLN SFRQYTKSTN MNGVFSG+RVV FD + SD+ERD K+ +F IDVKLYF +RFRLGDFI KGN+KCGLDVPF SNGTK+ N FEPTTC+V F Sbjct: 24 MAQSQHHNRSRRCCCCLFSIIWKLIIAIIFIVGLIFLVLFLILQPRSFKFSVKEAKLTQFNYTPNTNTLHYNLVLNFTAHNPNKKLNIYYDAVEGHVSYHGTRFASTNITSWLNSFSIYSFRQYTKSTNPMNGVFSGQRVVFFDHDQVSDYERDVKEKVFHIDVKLYFRMRFRLGDFIFPDIKGNMKCGLDVPFASNGTKLVNAFEPTTCEVNF 237
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LTJ4|A0A2K3LTJ4_TRIPR (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g037890 PE=4 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 8.155e-95 Identity = 153/209 (73.21%), Postives = 174/209 (83.25%), Query Frame = 0 Query: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIG-GYTKGNIKCGLDVPFGS-NGTKVFNVFEPTTCDV 207 MA AQP+N RRCCCCLF +IWKL++AII+L+ L +LI + IVQPR+FKFSVKEAKLT+FNY NN TL YNLVLNFTA NPNKKL I YDKVEG+VSY+G +F STDVIT+LNSFRQ TK TNSM+GVFSG+RVVVFD + S+ ERDKK G+F IDVKLYF IRF+LGD G TKGNIKCGLDVPFGS NGTKV + FEPTTC V Sbjct: 1 MAEAQPHNCCRRCCCCLFGVIWKLIVAIIVLIGLALLIFFFIVQPRSFKFSVKEAKLTEFNY--NNYTLSYNLVLNFTAHNPNKKLGIIYDKVEGYVSYEGIKFPSTDVITYLNSFRQDTKKTNSMSGVFSGQRVVVFDHDQVSNIERDKKVGVFHIDVKLYFRIRFKLGDITGDDDTKGNIKCGLDVPFGSNNGTKVMDAFEPTTCVV 207
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MFS7|A0A8B8MFS7_ABRPR (NDR1/HIN1-like protein 10 OS=Abrus precatorius OX=3816 GN=LOC113873484 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 7.878e-92 Identity = 138/205 (67.32%), Postives = 157/205 (76.59%), Query Frame = 0 Query: 5 QPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 Q +N +RRCCCCL +I K+L+AII+ + L ILI WL+VQPR FKF V EAKLTQFNY +NTL YNLVLNFTARNPNKKLNIYYDKVEG V YDG FASTDV+TW NSFRQ+TKST+SM+GVF G+ VV D SDF++DKK G+F IDV+LYFTIRFRLGD IGG TK KC L VP SNG F+PT CDV F Sbjct: 26 QRSNSARRCCCCLLSIFCKVLVAIIVFIGLFILIFWLVVQPRLFKFHVSEAKLTQFNY--TDNTLHYNLVLNFTARNPNKKLNIYYDKVEGQVLYDGVGFASTDVVTWKNSFRQHTKSTDSMSGVFLGQYVVARDHERDSDFDKDKKRGVFHIDVRLYFTIRFRLGDGIGGDTKAKAKCELGVPLSSNGI-TGTAFQPTECDVDF 227
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PG45|A0A2Z6PG45_TRISU (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_399830 PE=4 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 1.596e-89 Identity = 159/209 (76.08%), Postives = 177/209 (84.69%), Query Frame = 0 Query: 1 MAVAQPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIG-GYTKGNIKCGLDVPFGS-NGTKVFNVFEPTTCDV 207 MA AQP+N RRCCCCLF +IWKL++AII+L+VL+ILI + IVQPR+FKFSVKEAKLT+FNY NNNT+RYNLVLNFTA NPNKKL I YDKVEGHVSY+GTRFASTDVIT LNS RQ TK TNSM+GVFSG+ VVFD + SDFERDKK G+F ID+KLYF IR +LGD G TKGNIKCGLDVPFGS NGTKV N FEPTTCDV Sbjct: 1 MAEAQPHNCCRRCCCCLFGVIWKLIVAIIVLIVLVILIFYFIVQPRSFKFSVKEAKLTEFNY--NNNTVRYNLVLNFTAHNPNKKLGIIYDKVEGHVSYEGTRFASTDVITHLNSVRQDTKKTNSMSGVFSGQSFVVFDSDQISDFERDKKYGVFHIDLKLYFRIRVKLGDVTGDDDTKGNIKCGLDVPFGSNNGTKVMNTFEPTTCDV 207
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A394DF45|A0A394DF45_LUPAN (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_10908 PE=4 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 1.077e-84 Identity = 127/205 (61.95%), Postives = 151/205 (73.66%), Query Frame = 0 Query: 5 QPNNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 Q ++R R CCCCLFNI+W L+ IIILV L ILI +LIVQPR FKF+V EAKLT+FNY NNTL YNLVLNFTARNPNKKL I YDK EG Y+GTRF +TD +TWLNSFRQYTK+TN +GVFSGK+V+V DQ+ S + +K+ GIF IDVK+YFTIRF L +FI G K KC L VP S+ F+ T CDV++ Sbjct: 26 QHSHRRRGCCCCLFNILWITLVTIIILVALAILIFYLIVQPRPFKFTVTEAKLTEFNY--TNNTLHYNLVLNFTARNPNKKLQILYDKAEGQAFYEGTRFNTTDEMTWLNSFRQYTKTTNRTSGVFSGKQVMVLDQDQLSHLQENKRSGIFDIDVKIYFTIRFSLNNFIPGDMKAKAKCELKVPLSSSNGTTVAAFKLTKCDVSY 228
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|V7D192|V7D192_PHAVU (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G194900g PE=4 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.561e-83 Identity = 122/203 (60.10%), Postives = 149/203 (73.40%), Query Frame = 0 Query: 7 NNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 + R R CCCCLF I+WK+L+A+I+L L ILI WL+VQPR+FKF V EA LTQF Y NNNTL YN+VLNFTARNPNKKL+IYYDKVE Y+ RF++ DVIT +NSFRQYTKS++ M+ VFSG RV+ D S+ +DK DG++ I VKL F IRFRLGD+I G K +KC L VPF +NGT F F+ T CDV + Sbjct: 3 DKRQRNCCCCLFGILWKILVALIVLAGLAILIFWLVVQPRSFKFHVTEADLTQFEYHTNNNTLHYNMVLNFTARNPNKKLSIYYDKVEALAFYEDARFSNYDVITHMNSFRQYTKSSSPMSAVFSGHRVLTLDNEQISELNQDKSDGVYDIYVKLNFRIRFRLGDYISGNLKPKVKCDLKVPFANNGTLTF--FQTTKCDVDY 203
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2RIT4|A0A0B2RIT4_GLYSO (Putative syntaxin-24 OS=Glycine soja OX=3848 GN=glysoja_039476 PE=4 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 1.829e-83 Identity = 120/203 (59.11%), Postives = 154/203 (75.86%), Query Frame = 0 Query: 7 NNRSRRCCCCLFNIIWKLLIAIIILVVLIILIIWLIVQPRAFKFSVKEAKLTQFNYLNNNNTLRYNLVLNFTARNPNKKLNIYYDKVEGHVSYDGTRFASTDVITWLNSFRQYTKSTNSMNGVFSGKRVVVFDQNMGSDFERDKKDGIFRIDVKLYFTIRFRLGDFIGGYTKGNIKCGLDVPFGSNGTKVFNVFEPTTCDVTF 209 ++R R CCCCLF I+WK+L+A+I+LV L +LI WL+VQPR+FKF V EA LTQF+Y NNNTL YN+VLNFTARNPNKKLNIYYDKVE Y+ RFAS DVIT +NSFRQY KS++ M+ VF+G+++++ + + S+F +D+ G++ I VKLYF +RFRLGDFI K +KC L VPF NGT F +F+ T CDV F Sbjct: 29 SHRGRSCCCCLFGILWKILVALIVLVGLAVLIFWLVVQPRSFKFHVTEADLTQFDYYTNNNTLHYNMVLNFTARNPNKKLNIYYDKVEALAFYEDVRFASYDVITHMNSFRQYKKSSSPMSAVFTGQQLLMLNNDQVSEFNQDRNTGVYDIYVKLYFRMRFRLGDFISNDYKPKVKCHLKVPFSKNGT--FTLFQTTKCDVDF 229 The following BLAST results are available for this feature:
BLAST of rna-XM_004497608.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 10
BLAST of rna-XM_004497608.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 7
BLAST of rna-XM_004497608.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004497608.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497608.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497608.3; organism=Cicer arietinum; type=mRNA; length=630bpback to top protein sequence of rna-XM_004497608.3_CaCDCfrontier-NCBI_v1 >rna-XM_004497608.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497608.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497608.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=209bpback to top mRNA from alignment at chr4:23820247..23821155+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004497608.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497608.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497608.3; organism=Cicer arietinum; type=mRNA; length=909bp; location=Sequence derived from: chr4:23820247..23821155+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:23820247..23821155+ >rna-XM_004497608.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497608.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497608.3; organism=Cicer arietinum; type=CDS; length=630bp; location=Sequence derived from: chr4:23820247..23821155+ (Cicer arietinumback to top |