rna-XM_004500832.3

Transcript Overview


Name	rna-XM_004500832.3
Unique Name	rna-XM_004500832.3_CaCDCfrontier-NCBI_v1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	1269
Product	uncharacterized LOC101490069

References

External references for this mRNA


Database	Accession
GeneID	101490069
GenBank	XM_004500832.3

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:31423374..31427538 +	Cicer arietinum CDC Frontier NCBI RefSeq v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-04
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11	2024-01-25
InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL	2024-01-25

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cacanL058	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascanL188	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ancanL0259	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0301	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cacanL189	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancanL0351	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascanL678	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ancanL0599	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0701	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cancanR175	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cancanR180	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanL0971	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caicanL0548	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caicanL0555	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
canccR0717	Cajanus cajan Asha genome v1.0	Cajanus cajan
cancrR501	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cantifR316	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canpvR394	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvrvR396	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
cantifR337	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canvrvR410	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
cantifR343	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canvfhR349	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canvfhR354	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canvssR401	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canzwsR314	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvuaR363	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuaR377	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR376	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canvuR412	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
avjcanL498	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanL685	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanL691	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
cancarR320		Cicer arietinum
cancarR356		Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
jg56022.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun09g259100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
LR48_mrnaVigan09g037200	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Va04G070580.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vfaba.Hedin2.R1.2g210000.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Psat05G0033100-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
evm.model.Chr09.1193	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_05416	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-XM_014644173.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Cr_12680.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
rna-KK1_019423	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vfaba.Tiffany.R1.2g169760.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-TanjilR_12332	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Ca_14572.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Ca_04845	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC101490069	gene-LOC101490069_CaCDCfrontier-NCBI_v1	Cicer arietinum	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_004500832.3-1	exon-XM_004500832.3-1_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon
exon-XM_004500832.3-2	exon-XM_004500832.3-2_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_004500889.1	cds-XP_004500889.1_CaCDCfrontier-NCBI_v1	Cicer arietinum	CDS
cds-XP_004500889.1	cds-XP_004500889.1_CaCDCfrontier-NCBI_v1_2	Cicer arietinum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_004500832.3_CaCDCfrontier-NCBI_v1	rna-XM_004500832.3_CaCDCfrontier-NCBI_v1	Cicer arietinum	polypeptide
rna-XM_004500832.3_CaCDCfrontier-NCBI_v1	rna-XM_004500832.3_CaCDCfrontier-NCBI_v1-protein	Cicer arietinum	polypeptide

Homology

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BLAST of rna-XM_004500832.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:28606561-28608942 REVERSE LENGTH=434)

HSP 1 Score: 486.108 bits (1250), Expect = 7.745e-171
Identity = 226/344 (65.70%), Postives = 269/344 (78.20%), Query Frame = 0

Query:   74 LLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGF 417
            L++SKIAVCLVGGARRFELTGPSI+  IL  YPN+DLFL+SPLD ++FK  LLK AP++A V IF  +P+ E E  VRVLT  NSPNGI+GL+QYF+LVEGC+TMI +YQ +N F YDWI+RTRVDGYW  PL PE FIPGQYLVP GSSYGGLNDRFG+GDL TST+ALSR SLIP LDSAG T+LNSES+FKAQLTTQ V Y+TK LPFCI++DR YDFPP ++GVPVAALSS GPL+GAKCRPC   C G CV  VM  + K WSWT+W + ++ELCDAH  WE GWE IFD  AG+K A ARKR+  +    CV +F +++ +  +W  P  E+IC LG 
Sbjct:   88 LVKSKIAVCLVGGARRFELTGPSIMEKILRVYPNADLFLNSPLDKNSFKLRLLKDAPRLAWVRIFEPKPINETEPMVRVLTPMNSPNGIKGLLQYFNLVEGCITMIKAYQNENNFTYDWIVRTRVDGYWADPLDPEYFIPGQYLVPPGSSYGGLNDRFGVGDLNTSTVALSRLSLIPDLDSAGLTHLNSESAFKAQLTTQRVPYVTKPLPFCIMTDRTYDFPPYRYGVPVAALSSRGPLNGAKCRPCTVACNGSCVAEVMGKLNKEWSWTEWENETVELCDAHGEWEKGWEKIFDETAGEKLALARKRVGGLDSRRCVEEFENMRGMAVKWEAPASEQICTLGL 431

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BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y9A4|A0A1S2Y9A4_CICAR (Uncharacterized protein LOC101490069 OS=Cicer arietinum OX=3827 GN=LOC101490069 PE=4 SV=1)

HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLSSFYPVQNLLYNLPFKNAFINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFTHSSP 422
            MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLSSFYPVQNLLYNLPFKNAFINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFTHSSP
Sbjct:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLSSFYPVQNLLYNLPFKNAFINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFTHSSP 422

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072V382|A0A072V382_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25490294 PE=4 SV=1)

HSP 1 Score: 696.427 bits (1796), Expect = 0.000e+0
Identity = 348/416 (83.65%), Postives = 376/416 (90.38%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTL---SSFYPVQNLLYNLPFKNAFINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEIC 413
            M+KSPTK + P TK  SD+NWR++VL+IPL SFIIFF FHAPTL   SSF  VQNLL NLPF N    NS PSKDELLRSKIAVCLVGGARRFELTGPSIL MIL EYPNSDLFLHSPLDSDAFKFSLLK APKVAAVNIF  QPL ENES VRVLTAQNSPNGIQGLIQYFDLVEGCLTMINS+Q KNK KYDWIIRTRVDGYWNGPLGP  F+PGQYLVP+GSSYGGLNDRFG+GD RTSTIALSR SLIPKLDSAGFT+LNSE++FKAQLTTQ+V YLTKRLPFCIVSDRKYDFPP++FGVPVAALSSPGPLSG KCRPCKP+C GVCVE VM++VEKGWSWTDWADGSLELCDAHESWE+GWE IFD+VAGKKFA+ARK+I S+KFDDCV+DF+ LKN+TAQWN PPI+EIC
Sbjct:    1 MIKSPTKSMYPFTKRFSDINWRILVLIIPLFSFIIFFFFHAPTLNALSSFSSVQNLLSNLPFINT--ANSSPSKDELLRSKIAVCLVGGARRFELTGPSILEMILKEYPNSDLFLHSPLDSDAFKFSLLKLAPKVAAVNIFHPQPLQENESSVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSHQEKNKIKYDWIIRTRVDGYWNGPLGPNFFVPGQYLVPAGSSYGGLNDRFGVGDFRTSTIALSRLSLIPKLDSAGFTDLNSEAAFKAQLTTQNVNYLTKRLPFCIVSDRKYDFPPARFGVPVAALSSPGPLSGTKCRPCKPICVGVCVEPVMMFVEKGWSWTDWADGSLELCDAHESWEDGWEKIFDKVAGKKFANARKQIHSLKFDDCVNDFVQLKNITAQWNAPPIQEIC 414

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WH58|A0A9D4WH58_PEA (Transmembrane protein OS=Pisum sativum OX=3888 GN=KIW84_050331 PE=4 SV=1)

HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 333/426 (78.17%), Postives = 370/426 (86.85%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLSSFYPVQNLLYNLPF---KNAFINNSPPS---KDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFTHS 420
            MVK+P KF+ P +K +SD N R IVL+IPL++FII FSF              L++LPF   KN F ++   S   KDELLRSKIAVCLVGGARRFELTGPSI++MIL EYPNSDLFLHSPLDSDAFKFSLLK AP++AAVNIF+ QPLPENE++VRVL+AQNSPNGIQGLIQYFDLVEGC+TMI S+Q+KN  KYDWIIRTRVDGYWNGPLGPENF+PGQYLVPSGSSYGGLNDRFGIGDL TSTIALSR SLIPKLDSAGF+NLNSES+FKAQLTTQ V Y TKRLPFCI+SDRKYDFPP++FGVPVAALSS GPLSG KCRPCKPVC GVCVE VM++VEKGWSWTDWADGSLELC+A ESWE+GWE +FD+VAGKKF DARK+I SM FDDC+HDFI LKN+TAQWN PPIEEICALG THS
Sbjct:    1 MVKTPRKFMNPFSKSISDTNRRFIVLMIPLLAFIILFSF--------------LFDLPFQKVKNGFFSSDSSSSPSKDELLRSKIAVCLVGGARRFELTGPSIMDMILKEYPNSDLFLHSPLDSDAFKFSLLKSAPRIAAVNIFQPQPLPENETFVRVLSAQNSPNGIQGLIQYFDLVEGCVTMIKSHQIKNNIKYDWIIRTRVDGYWNGPLGPENFVPGQYLVPSGSSYGGLNDRFGIGDLTTSTIALSRLSLIPKLDSAGFSNLNSESAFKAQLTTQKVSYQTKRLPFCIISDRKYDFPPTRFGVPVAALSSRGPLSGTKCRPCKPVCVGVCVEYVMMWVEKGWSWTDWADGSLELCNAEESWEDGWEKVFDKVAGKKFGDARKKIHSMNFDDCIHDFIQLKNLTAQWNAPPIEEICALGLTHS 412

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8LK08|A0A8B8LK08_ABRPR (Uncharacterized protein LOC113865393 OS=Abrus precatorius OX=3816 GN=LOC113865393 PE=4 SV=1)

HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0
Identity = 312/428 (72.90%), Postives = 355/428 (82.94%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTL---SSFYPVQNLLYNLPFKNA----FINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFTHSS 421
            M+KSP KF+ P  K VSDL+WR I L+IPL+ F +FFS H+ TL   +SFYPV+  L++LPF+         N P  KDEL+RS++AVCLVGGARRFELTGPSI  MIL +YPNSDLFLHSPLDSD+FKFSLLKFAPKVAAV IF  QPLPENES VRVLT  NSPNGIQGL+QYF+LVEGCLTMI +++ KN F YDWIIRTRVDGYWN PLGP+NF+PG+YLVP GSSYGGLNDR GIGD+  ST+ALSR SLIP+LDSAGFTNLNSE++FKAQLTTQ+V YLTKRLPFCIVSDRKYDF P +FGVPVAALSS GPLSGAKCRPCKPVC+G CVENVM  VE+ WSWTDW++GSLELCDAHESWENGWE IFDRVAGKK A ARK I S+K + C+ DFI LK  T+ W+ PP+ +IC LG   SS
Sbjct:    1 MLKSPRKFLMPFAKRVSDLDWRFIGLIIPLVLFFVFFSLHSTTLNAFTSFYPVKQFLFSLPFQKGKTGDISENDPAWKDELVRSRMAVCLVGGARRFELTGPSIFEMILKQYPNSDLFLHSPLDSDSFKFSLLKFAPKVAAVRIFHPQPLPENESSVRVLTPHNSPNGIQGLLQYFNLVEGCLTMIKAHEEKNNFTYDWIIRTRVDGYWNAPLGPQNFVPGKYLVPPGSSYGGLNDRLGIGDITASTVALSRLSLIPQLDSAGFTNLNSEAAFKAQLTTQNVTYLTKRLPFCIVSDRKYDFLPGRFGVPVAALSSRGPLSGAKCRPCKPVCRGACVENVMESVEREWSWTDWSNGSLELCDAHESWENGWEKIFDRVAGKKLAAARKIIASLKMEQCIEDFIQLKKRTSHWSAPPVIQICRLGLNRSS 428

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A371E082|A0A371E082_MUCPR (Transmembrane protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_62565 PE=4 SV=1)

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 313/424 (73.82%), Postives = 354/424 (83.49%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLSSF---YPVQNLLYNLPFKNA--FINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFTH 419
            M+KSP KF+ P TK V DLNWRL   +IPLI F++FFS H+ T + F   YPVQ  L+NLPF+    +  N P  K+ELLRS+IAVCLVGGARRFELTGPSI+ MIL EYPNSDLFLHSPLDSD+FKFSLLK APKVAAV IF  Q LPENESYVRVLTA NSPNGIQGL+QYF+LVEGCLTMINS+Q KNKFKYDWI+RTRVDGYWN PLGPENF+PG+YLVP GSSYGGLNDR GIGDLR ST+ALSR SL+P LDSAGFTNLNSE++FKAQLTTQ+V +L KRLPFC+VSDRKY FPP++FGVPVAALSSPGPLSGAKCRPCKPVC G CVENVM  VEK WSWT+W +G+L+LCDAHE WE GWE  FDRV GK  A ARKRI+SMK ++C+ DFI L+  TA W+ P + +IC LGFT 
Sbjct:    1 MLKSPRKFMAPFTKWVPDLNWRLTGFIIPLILFLMFFSLHSYTSNGFKALYPVQQFLFNLPFQKTKQWNENDPGWKEELLRSRIAVCLVGGARRFELTGPSIMEMILKEYPNSDLFLHSPLDSDSFKFSLLKSAPKVAAVRIFFPQRLPENESYVRVLTAHNSPNGIQGLLQYFNLVEGCLTMINSHQQKNKFKYDWIVRTRVDGYWNAPLGPENFVPGKYLVPPGSSYGGLNDRLGIGDLRISTVALSRLSLVPHLDSAGFTNLNSEAAFKAQLTTQNVTHLAKRLPFCVVSDRKYVFPPNRFGVPVAALSSPGPLSGAKCRPCKPVCTGQCVENVMELVEKEWSWTNWENGTLKLCDAHEGWELGWEKNFDRVGGKIRAAARKRIQSMKMEECLRDFIQLRKRTAHWSAPSVHKICTLGFTR 424

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445K3T8|A0A445K3T8_GLYSO (Transmembrane protein OS=Glycine soja OX=3848 GN=D0Y65_013477 PE=4 SV=1)

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 307/425 (72.24%), Postives = 354/425 (83.29%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPT------LSSFYPVQNLLYNLPFKNAFINNSPP--SKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGF 417
            M++SP KF+ P TK VSDLNWRL  L+IPL+ FI FFS H  +       S+FYPVQ  L+NLPFK  FI+   P  SKDELLRSKIAVCLVGGARRFELTGPSI+ M+L EYPNSD+FLHSPLD D FKFSLLKFAP VAAV IF  QPLPENESYVRVLTA NSPNGIQGL+QYF+LVEGCLTMI S+Q K  F YDWIIRTRVDGYWN PLG ENF+PG+YLVP+GSSYGGLNDR GIGDLRTST+ALSR SL+P LDSAGF NLNSE++FKAQLTT +V ++ KRLPFC+VSDR+YDFPP +FGVPVAALSSPGPLSGAKCRPC+ VC+G+C E VM  VEK WSWT W +G+L+LCDAH++WE+GWE  FDR+AGKKFA ARKRI+SMK ++CV DF+ L+  +A W+ P ++EICALG 
Sbjct:    1 MLQSPRKFVTPFTKCVSDLNWRLTGLIIPLVLFITFFSLHYSSSTSSNGFSAFYPVQQFLFNLPFK--FISEEDPVVSKDELLRSKIAVCLVGGARRFELTGPSIIEMVLKEYPNSDVFLHSPLDKDTFKFSLLKFAPNVAAVRIFHPQPLPENESYVRVLTAHNSPNGIQGLLQYFNLVEGCLTMIKSHQQKKNFTYDWIIRTRVDGYWNAPLGSENFVPGKYLVPAGSSYGGLNDRLGIGDLRTSTVALSRLSLVPNLDSAGFNNLNSEAAFKAQLTTLNVSHVAKRLPFCVVSDRRYDFPPGRFGVPVAALSSPGPLSGAKCRPCREVCEGLCAETVMDSVEKVWSWTHWENGALQLCDAHDAWESGWEKNFDRLAGKKFAAARKRIQSMKMEECVKDFVQLRKRSAHWSAPLVDEICALGL 423

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|I1K7E5|I1K7E5_SOYBN (Transmembrane protein OS=Glycine max OX=3847 GN=100786713 PE=4 SV=1)

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 307/425 (72.24%), Postives = 354/425 (83.29%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPT------LSSFYPVQNLLYNLPFKNAFINNSPP--SKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGF 417
            M++SP KF+ P TK VSDLNWRL  L+IPL+ FI FFS H  +       S+FYPVQ  L+NLPFK  FI+   P  SKDELLRSKIAVCLVGGARRFELTGPSI+ M+L EYPNSD+FLHSPLD D FKFSLLKFAP VAAV IF  QPLPENESYVRVLTA NSPNGIQGL+QYF+LVEGCLTMI S+Q K  F YDWIIRTRVDGYWN PLG ENF+PG+YLVP+GSSYGGLNDR GIGDLRTST+ALSR SL+P LDSAGF NLNSE++FKAQLTT +V ++ KRLPFC+VSDR+YDFPP +FGVPVAALSSPGPLSGAKCRPC+ VC+G+C E VM  VEK WSWT W +G+L+LCDAH++WE+GWE  FDR+AGKKFA ARKRI+SMK ++CV DF+ L+  +A W+ P ++EICALG 
Sbjct:    1 MLQSPRKFVTPFTKCVSDLNWRLTGLIIPLVLFITFFSLHYSSSTSSNGFSAFYPVQQFLFNLPFK--FISEEDPVVSKDELLRSKIAVCLVGGARRFELTGPSIIEMVLKEYPNSDVFLHSPLDKDTFKFSLLKFAPNVAAVRIFHPQPLPENESYVRVLTAHNSPNGIQGLLQYFNLVEGCLTMIKSHQQKKNFTYDWIIRTRVDGYWNAPLGSENFVPGKYLVPAGSSYGGLNDRLGIGDLRTSTVALSRLSLVPNLDSAGFNNLNSEAAFKAQLTTLNVSHVAKRLPFCVVSDRRYDFPPGRFGVPVAALSSPGPLSGAKCRPCREVCEGLCAETVMDSVEKVWSWTHWENGALQLCDAHDAWESGWEKNFDRLAGKKFAAARKRIQSMKMEECVKDFVQLRKRSAHWSAPLVDEICALGL 423

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445KUW7|A0A445KUW7_GLYSO (Transmembrane protein OS=Glycine soja OX=3848 GN=D0Y65_008505 PE=4 SV=1)

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 305/426 (71.60%), Postives = 352/426 (82.63%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIV--LLIPLISFIIFFSFHAPT----LSSFYPVQNLLYNLPFKNAFINNSPP--SKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFT 418
            M +SP KF+ P TK VSDLNWRL +  L+IPL+ FI FFS H  +     S+FYPVQ  L+N+PFK  FI    P  SKDELLRSKIAVCLVGGARRFELTGPSI+ M+L EYPNSDLFLHSPLD D FKFS+LKFAP VAAV IF  QPLPENE YVRVLTA NSPNGIQGL+QYF+LVEGCLTMI S+Q K+ F YDWIIRTRVDGYWN PLGPENF+PG+YLVP GSSYGGLNDR GIGDLRTST+ALSR SL+P LDSAGF NLNSE++FKAQLTT +V ++ KRLPFC+VSDR+YDFPP +FGVPVAALSSPGPLSGAKCRPC+P C+G+CVE VM  VEK WSWT W +G+L+LCDAH++WE+GWE IFDR +G KFA ARKRI SM+  +CV DF+ L+  +A W+ PP++EIC LG +
Sbjct:    1 MFQSPRKFVTPFTKWVSDLNWRLGLTGLIIPLVLFITFFSLHYSSTSNGFSAFYPVQQFLFNIPFK--FICEDDPVISKDELLRSKIAVCLVGGARRFELTGPSIIEMVLKEYPNSDLFLHSPLDKDTFKFSILKFAPNVAAVRIFHPQPLPENEPYVRVLTAHNSPNGIQGLLQYFNLVEGCLTMIKSHQQKHNFTYDWIIRTRVDGYWNAPLGPENFVPGKYLVPPGSSYGGLNDRLGIGDLRTSTVALSRLSLVPNLDSAGFNNLNSEAAFKAQLTTLNVSHVAKRLPFCVVSDRRYDFPPGRFGVPVAALSSPGPLSGAKCRPCRPACEGLCVETVMDNVEKEWSWTHWENGALQLCDAHDAWESGWEKIFDRFSGNKFAAARKRIHSMRMGECVKDFVQLRKRSAHWSAPPVDEICTLGLS 424

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|I1JSW9|I1JSW9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100814333 PE=4 SV=1)

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 305/426 (71.60%), Postives = 352/426 (82.63%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIV--LLIPLISFIIFFSFHAPT----LSSFYPVQNLLYNLPFKNAFINNSPP--SKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFT 418
            M +SP KF+ P TK VSDLNWRL +  L+IPL+ FI FFS H  +     S+FYPVQ  L+N+PFK  FI    P  SKDELLRSKIAVCLVGGARRFELTGPSI+ M+L EYPNSDLFLHSPLD D FKFS+LKFAP VAAV IF  QPLPENE YVRVLTA NSPNGIQGL+QYF+LVEGCLTMI S+Q K+ F YDWIIRTRVDGYWN PLGPENF+PG+YLVP GSSYGGLNDR GIGDLRTST+ALSR SL+P LDSAGF NLNSE++FKAQLTT +V ++ KRLPFC+VSDR+YDFPP +FGVPVAALSSPGPLSGAKCRPC+P C+G+CVE VM  VEK WSWT W +G+L+LCDAH++WE+GWE IFDR +G KFA ARKRI SM+  +CV DF+ L+  +A W+ PP++EIC LG +
Sbjct:    1 MFQSPRKFVTPFTKWVSDLNWRLGLTGLIIPLVLFITFFSLHYSSTSNGFSAFYPVQQFLFNIPFK--FICEDDPVISKDELLRSKIAVCLVGGARRFELTGPSIIEMVLKEYPNSDLFLHSPLDKDTFKFSILKFAPNVAAVRIFHPQPLPENEPYVRVLTAHNSPNGIQGLLQYFNLVEGCLTMIKSHQQKHNFTYDWIIRTRVDGYWNAPLGPENFVPGKYLVPPGSSYGGLNDRLGIGDLRTSTVALSRLSLVPNLDSAGFNNLNSEAAFKAQLTTLNVSHVAKRLPFCVVSDRRYDFPPGRFGVPVAALSSPGPLSGAKCRPCRPACEGLCVETVMDNVEKEWSWTHWENGALQLCDAHDAWESGWEKIFDRFSGNKFAAARKRIHSMRMGECVKDFVQLRKRSAHWSAPPVDEICTLGLS 424

[Close]

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U0Y0|A0A1S3U0Y0_VIGRR (Uncharacterized protein LOC106760755 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760755 PE=4 SV=1)

HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 302/422 (71.56%), Postives = 342/422 (81.04%), Query Frame = 0

Query:    1 MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLS----SFYPVQNLLYNLPFKNAFINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNMILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDGYWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIPKLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFGVPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSLELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNVTAQWNVPPIEEICALGFT 418
            M+KSP  F+ P TK VS++NWRL  L+IP + FIIFFS H  + S    +FYPV+  L  LPF     ++   +K+ELLRSKIAVCLVGGARRFELTGPSI+  IL EYPNSDLFLHSPLDSD FKFSLLK AP VAA+ IFR QPLPENESYVRVLTA NSPNGIQGL+QYF+LVEGCLTMI S+Q KN F YDW++RTRVDGYWN PLGP+NF+PG+YLVP GSSYGGLNDR GIGDL TST+ALSR SLIP LDSAGF NLNSE++FKAQLTTQ+V Y+ KRLPFC+VSDR+YDFPP QFGVPVAALSSPGPLSGAKCRPC  VCQG+CVE VM  VEK WSWT+W +G LELCDA E WE+GWE IFDRVAGKK A ARKRI+ MK  +CV DF  L+  +  W+ PP +EIC  G T
Sbjct:    1 MLKSPRNFVAPFTKWVSEINWRLTGLIIPFVLFIIFFSLHYSSTSNGFKAFYPVEFFL-RLPFSGE--SDHVLNKEELLRSKIAVCLVGGARRFELTGPSIIENILKEYPNSDLFLHSPLDSDTFKFSLLKSAPNVAAIRIFRPQPLPENESYVRVLTAHNSPNGIQGLLQYFNLVEGCLTMIRSHQQKNNFTYDWVVRTRVDGYWNAPLGPQNFVPGKYLVPPGSSYGGLNDRLGIGDLTTSTVALSRLSLIPHLDSAGFNNLNSEAAFKAQLTTQNVTYVAKRLPFCVVSDRRYDFPPGQFGVPVAALSSPGPLSGAKCRPCTAVCQGLCVETVMESVEKVWSWTEWENGVLELCDAREGWESGWEKIFDRVAGKKLARARKRIQFMKTGECVKDFQELRKRSTHWSAPPEDEICTFGLT 419

The following BLAST results are available for this feature:

BLAST of rna-XM_004500832.3 vs. Araport11
BLAST of rna-XM_004500832.3 vs. Araport11
BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL

BLAST of rna-XM_004500832.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 1


Match Name	E-value	Identity	Description
\|	7.745e-171	65.70	Symbols: no symbol available \| no full name availa...	[more]

BLAST of rna-XM_004500832.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of rna-XM_004500832.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S2Y9A4\|A0A1S2Y9A4_CICAR	0.000e+0	100.00	Uncharacterized protein LOC101490069 OS=Cicer arie...	[more]
tr\|A0A072V382\|A0A072V382_MEDTR	0.000e+0	83.65	Transmembrane protein, putative OS=Medicago trunca...	[more]
tr\|A0A9D4WH58\|A0A9D4WH58_PEA	0.000e+0	78.17	Transmembrane protein OS=Pisum sativum OX=3888 GN=...	[more]
tr\|A0A8B8LK08\|A0A8B8LK08_ABRPR	0.000e+0	72.90	Uncharacterized protein LOC113865393 OS=Abrus prec...	[more]
tr\|A0A371E082\|A0A371E082_MUCPR	0.000e+0	73.82	Transmembrane protein (Fragment) OS=Mucuna prurien...	[more]
tr\|A0A445K3T8\|A0A445K3T8_GLYSO	0.000e+0	72.24	Transmembrane protein OS=Glycine soja OX=3848 GN=D...	[more]
tr\|I1K7E5\|I1K7E5_SOYBN	0.000e+0	72.24	Transmembrane protein OS=Glycine max OX=3847 GN=10...	[more]
tr\|A0A445KUW7\|A0A445KUW7_GLYSO	0.000e+0	71.60	Transmembrane protein OS=Glycine soja OX=3848 GN=D...	[more]
tr\|I1JSW9\|I1JSW9_SOYBN	0.000e+0	71.60	Uncharacterized protein OS=Glycine max OX=3847 GN=...	[more]
tr\|A0A1S3U0Y0\|A0A1S3U0Y0_VIGRR	0.000e+0	71.56	Uncharacterized protein LOC106760755 OS=Vigna radi...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35112	OS08G0360500 PROTEIN	coord: 20..419

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:31423374..31427538+
coding sequence from alignment at chr5:31423374..31427538+

mRNA sequence

>rna-XM_004500832.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004500832.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004500832.3; organism=Cicer arietinum; type=mRNA; length=1269bp
ATGGTGAAGAGTCCAACAAAATTCATCAAACCTATTACTAAACTCGTTTC
TGATCTTAATTGGCGTTTAATTGTGTTGTTAATTCCTCTAATTTCATTTA
TCATATTCTTCTCTTTCCATGCACCAACTCTTTCATCTTTTTACCCTGTT
CAGAACCTTCTTTATAATCTTCCTTTTAAGAATGCGTTTATCAACAATTC
ACCACCTTCCAAAGATGAATTGTTACGATCGAAAATTGCTGTGTGTTTGG
TTGGTGGTGCTAGAAGATTTGAACTCACAGGACCTTCAATATTGAATATG
ATACTAAACGAGTATCCGAATTCGGATCTTTTTTTGCATAGTCCTTTAGA
CTCAGATGCATTCAAATTCTCTTTGTTGAAGTTTGCGCCGAAAGTCGCCG
CTGTTAATATCTTTCGCCAACAACCGTTGCCGGAGAATGAGTCTTATGTT
CGAGTCCTAACGGCGCAGAACTCGCCTAACGGAATCCAGGGGCTTATTCA
ATATTTTGACCTGGTGGAAGGTTGCTTAACAATGATAAATTCATATCAAG
TGAAAAACAAGTTCAAATACGATTGGATAATCCGAACAAGAGTAGACGGT
TATTGGAACGGTCCACTCGGTCCAGAAAATTTCATTCCCGGTCAGTACTT
GGTCCCATCCGGTTCATCATACGGTGGACTCAACGACCGGTTCGGTATCG
GCGACCTCAGAACCTCAACAATAGCATTATCTCGCTTCTCTCTGATTCCC
AAACTAGATTCTGCTGGATTCACAAACCTCAACTCAGAATCATCTTTCAA
AGCCCAACTCACAACCCAAAGTGTGAAATACCTCACAAAACGCCTACCTT
TTTGCATAGTTTCGGACCGGAAATACGATTTTCCTCCGAGCCAGTTCGGT
GTACCTGTTGCAGCATTGTCGAGTCCCGGTCCACTTAGTGGAGCTAAGTG
TAGACCGTGTAAACCGGTTTGCCAGGGGGTGTGCGTAGAAAATGTGATGG
TGTATGTTGAAAAGGGGTGGAGTTGGACTGATTGGGCCGATGGGTCGCTT
GAACTGTGTGATGCTCATGAAAGTTGGGAAAATGGTTGGGAAAATATTTT
TGATAGAGTTGCTGGAAAGAAATTTGCAGATGCTAGAAAGCGAATTCGAT
CTATGAAATTTGATGATTGTGTTCATGATTTCATTCACTTGAAAAATGTC
ACTGCTCAATGGAATGTTCCTCCCATTGAAGAAATTTGTGCTTTGGGGTT
CACCCATTCTTCACCATAG

protein sequence of rna-XM_004500832.3_CaCDCfrontier-NCBI_v1

>rna-XM_004500832.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004500832.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004500832.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=422bp
MVKSPTKFIKPITKLVSDLNWRLIVLLIPLISFIIFFSFHAPTLSSFYPV
QNLLYNLPFKNAFINNSPPSKDELLRSKIAVCLVGGARRFELTGPSILNM
ILNEYPNSDLFLHSPLDSDAFKFSLLKFAPKVAAVNIFRQQPLPENESYV
RVLTAQNSPNGIQGLIQYFDLVEGCLTMINSYQVKNKFKYDWIIRTRVDG
YWNGPLGPENFIPGQYLVPSGSSYGGLNDRFGIGDLRTSTIALSRFSLIP
KLDSAGFTNLNSESSFKAQLTTQSVKYLTKRLPFCIVSDRKYDFPPSQFG
VPVAALSSPGPLSGAKCRPCKPVCQGVCVENVMVYVEKGWSWTDWADGSL
ELCDAHESWENGWENIFDRVAGKKFADARKRIRSMKFDDCVHDFIHLKNV
TAQWNVPPIEEICALGFTHSSP

mRNA from alignment at chr5:31423374..31427538+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_004500832.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004500832.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004500832.3; organism=Cicer arietinum; type=mRNA; length=4165bp; location=Sequence derived from: chr5:31423374..31427538+ (Cicer arietinum
CTATACTCCACTTCCTTACTACCTTTTAACTACTTTCTATAATACAGCCT
ACTACACAATACATAAAACAACTCCAACCACCTCCAATTTCAAACGGATT
AAACACATTCATATTCGTTTTTCTTTCTCACAACACATTCATATATGCGT
TGAATTCATAGGAATAAATCATTAATACGGTGATTTAATTTAGTTAAATA
GAATTAAAGGCTAAGCAGCCTCTGCTTTTACTTTTCCATTTCAATCGTTC
TCTTCCGTCTCGAATGGGGTACCTTTCCAACCTTTCTCATCACGCTAAAT
AACCGCGTCTGGTACCATACCAACTCTCACACCAAAATATCATGCTCCTT
CCATTTTACCCTTCTTAATTTCATAcatttcatatatatttcattttctg
TACTCTTAGTTTTCATTTCATCACATACCACGTGATGCGAATATTTACCC
tttcaaaacaataaaaaaaactaacactAACACCCTCAAGGTtttgtaga
agaaaaaaaatggtgaaGAGTCCAACAAAATTCATCAAACCTATTACTAA
ACTCGTTTCTGATCTTAATTGGCGTTTAATTGTGTTGTTAATTCCTCTAA
TTTCATTTATCATATTCTTCTCTTTCCATGCACCAACTCTTTCATCTTTT
TACCCTGTTCAGAACCTTCtttataatcttccttttaAGAATGCGTTTAT
CAACAATTCACCACCTTCCAAAGATGAATTGTTACGATCGAAAATTGCTG
TGTGTTTGGTTGGTGGTGCTAGAAGATTTGAACTCACAGGACCTTCAATA
TTGAATATGATACTAAACGAGTATCCGAATTCGGATCTTTTTTTGCATAG
TCCTTTAGACTCAGATGCATTCAAATTCTCTTTGTTGAAGTTTGCGCCGA
AAGTCGCCGCTGTTAATATCTTTCGCCAACAACCGTTGCCGGAGAATGAG
TCTTATGTTCGAGTCCTAACGGCGCAGAACTCGCCTAACGGAATCCAGGT
TTTGTGactgtttccttttttttcttttaatttttcattaattattattt
attttactctcTCTGGATTCATAAAAAGTTCCTACTGCTATTTCAGTtgg
atattttattattctgtTTTCTATTGAGAATTGGTACATTATTCTTTTTC
CCATATAAATCACGCGATCTGTAACCGTGGAATAATCGCAGAAATATTTG
ATACCTTGGAATTCGAAATATTTGATACCTTGGAATTCGAAATATTTCTA
TTTAGTATGAGTTTCGTGgttaaaatcttttttaaaaaatcatacacTTG
GTCATGTCTCCCTTATGTTGCATCTATGAAGATTTTAATGCTAGGATTTT
TATGGAACTTTATTTTTTCATCTGACTGCAAAAGTCTATTTGCGATATAA
cgtaaaaggaaaaaaaaaatccattagTTGTGCAGTTCAGCTTCCAAATC
CATTTACGTTGGGTAAGCAATTGTTGTTAGGTAATTAGTCATTGACGAGT
GCGACAGAATTTGATAACAACTGATAGAGATATTATCGAATAGGAAATTG
TTATAGTAAACACGTTTGCCTTAAGTGTAAAAAGatttataaaagattaa
aatcatACTTATCTctaaaagtatatatttaaaagaaaatgttaaatttg
ttccaaaaaagttttaattgttaattgaaggttttttttaataaggtaat
aagtaattaaatcgttttaaaagaaaaattaatttttttataaataaaaa
ttctagATTAGGAAAAAAGTTCATATTTATTTAGGAATTTGTACATGGTA
TCatgtatatgttattataatgtTGAAAAGTATGCCAAAATATGACATAA
CTTTGATCTCGGATGAAAATGTttataaagttaatattttataaaattat
tattaaatctgCTTGGATTtgtattacaattttaattggtatcttatgtt
ttttaattaaataaaatttcaacaacacTTGATTAGTTAAAACTTAAAAG
CAAAACCTTGCTTTTTATCATTCGCTGTCTAGCCTATCATCACTTTATGA
TTTGCTTCAAATGTAGCCCACATATATCTTTAGAGcaaatttatttttcc
tctGGTTTTTCAAGTAAATGTGTGGGTATATATTCTTTTActctttattt
cttttataaaagtGATTTTCTTGGTTCAAAAGAGTCCAAAAAGGAATttc
ctttttataaaaagaataatgatacttatattctttaatatatatttttc
gaTGCATTTActaatattgattaaaatttatatatattatgttaaaaatt
aataaaatctataacttttttagttaattttaactaacataatacatatt
aatattaatagtcCTTATGttataaaaagtatatttttataatattattg
caATAACATAAAATTTCAATGTCATTAAGATATAGTTCAACTTATCATTA
TTGTGTTGGATATTATTTCataactttaaatttaaaattttataattgtg
tacagatttttttatcatttcatttaCACACAAAAATACTACAAAATCTC
AATAACATAGctaaaatttttttaatagcatCATAATTTCACACATatat
aatacaatataataatttaattttgagtatcgatatttatttttaattag
tataAACTTACTCTAGTTATTGTTACTCTTATTAAGTAGTAGTATTGAAA
TCTATTTATTGGTTGAGACTTGAGAGTAcataattctctttttaaaagtC
CTTAGGCTTCTAGATtcgaacaatttaattttttttctttctttcttgtt
GAAGAGTTCTACTTAAACTCCTGAAGTTATATGGGGTAGTTAGGTTTGGT
TGGCGGGTCTAACAGTCTAACCACAAGTCCGCACCTCCCCTTTACTTTTC
TTCTCATTCCAAATAGTGGTCTAATGTTATGGCTTTGAAAAGCAACAGTA
ATTTTTTTGCATTATGATCCGTTTTaccataattattaaatttgatcatt
tcatttatatatttttttataaatataaataaaagaaagtgaataacaat
tttactaaaatattaatgttaacCATTAGAGAGTCACACATAATTAATTA
GAATGtatatttaaaagaagaaaaaacaattaaaattgtaattagaattt
aaaagtaacattttgtttttttgtgaaaattgttacaaagcaaaagaaat
aagtttatttttagaaatttggtAGTAATTACCATGACATTGAACTAATT
CTATTTGCATGCATTTTGCAGGGGCTTATTCAATATTTTGACCTGGTGGA
AGGTTGCTTAACAATGATAAATTCATATCAAGTGAAAAACAAGTTCAAAT
ACGATTGGATAATCCGAACAAGAGTAGACGGTTATTGGAACGGTCCACTC
GGTCCAGAAAATTTCATTCCCGGTCAGTACTTGGTCCCATCCGGTTCATC
ATACGGTGGACTCAACGACCGGTTCGGTATCGGCGACCTCAGAACCTCAA
CAATAGCATTATCTCGCTTCTCTCTGATTCCCAAACTAGATTCTGCTGGA
TTCACAAACCTCAACTCAGAATCATCTTTCAAAGCCCAACTCACAACCCA
AAGTGTGAAATACCTCACAAAACGCCTACCTTTTTGCATAGTTTCGGACC
GGAAATACGATTTTCCTCCGAGCCAGTTCGGTGTACCTGTTGCAGCATTG
TCGAGTCCCGGTCCACTTAGTGGAGCTAAGTGTAGACCGTGTAAACCGGT
TTGCCAGGGGGTGTGCGTAGAAAATGTGATGGTGTATGTTGAAAAGGGGT
GGAGTTGGACTGATTGGGCCGATGGGTCGCTTGAACTGTGTGATGCTCAT
GAAAGTTGGGAAAATGGTTgggaaaatatttttgatagagTTGCTGGAAA
GAAATTTGCAGATGCTAGAAAGCGAATTCGATCTATGAAATTTGATGATT
GTGTTCATGATTTCATTCACTTGAAAAATGTCACTGCTCAATGGAATGTT
CCTCCCATTGAAGAAATTTGTGCTTTGGGGTTCACCCATTCTTCACCATA
GGAACTATACTTTTTTTTGGTTATTTGGattttctttatgaaattttGAT
AATACACATAGGCGATGCTGACAAAATGTTGATATTGaagtagttttttt
attttgatggtcTTA

Coding sequence (CDS) from alignment at chr5:31423374..31427538+

>rna-XM_004500832.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004500832.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004500832.3; organism=Cicer arietinum; type=CDS; length=1269bp; location=Sequence derived from: chr5:31423374..31427538+ (Cicer arietinum
atggtgaaGAGTCCAACAAAATTCATCAAACCTATTACTAAACTCGTTTC
TGATCTTAATTGGCGTTTAATTGTGTTGTTAATTCCTCTAATTTCATTTA
TCATATTCTTCTCTTTCCATGCACCAACTCTTTCATCTTTTTACCCTGTT
CAGAACCTTCtttataatcttccttttaAGAATGCGTTTATCAACAATTC
ACCACCTTCCAAAGATGAATTGTTACGATCGAAAATTGCTGTGTGTTTGG
TTGGTGGTGCTAGAAGATTTGAACTCACAGGACCTTCAATATTGAATATG
ATACTAAACGAGTATCCGAATTCGGATCTTTTTTTGCATAGTCCTTTAGA
CTCAGATGCATTCAAATTCTCTTTGTTGAAGTTTGCGCCGAAAGTCGCCG
CTGTTAATATCTTTCGCCAACAACCGTTGCCGGAGAATGAGTCTTATGTT
CGAGTCCTAACGGCGCAGAACTCGCCTAACGGAATCCAGGGGCTTATTCA
ATATTTTGACCTGGTGGAAGGTTGCTTAACAATGATAAATTCATATCAAG
TGAAAAACAAGTTCAAATACGATTGGATAATCCGAACAAGAGTAGACGGT
TATTGGAACGGTCCACTCGGTCCAGAAAATTTCATTCCCGGTCAGTACTT
GGTCCCATCCGGTTCATCATACGGTGGACTCAACGACCGGTTCGGTATCG
GCGACCTCAGAACCTCAACAATAGCATTATCTCGCTTCTCTCTGATTCCC
AAACTAGATTCTGCTGGATTCACAAACCTCAACTCAGAATCATCTTTCAA
AGCCCAACTCACAACCCAAAGTGTGAAATACCTCACAAAACGCCTACCTT
TTTGCATAGTTTCGGACCGGAAATACGATTTTCCTCCGAGCCAGTTCGGT
GTACCTGTTGCAGCATTGTCGAGTCCCGGTCCACTTAGTGGAGCTAAGTG
TAGACCGTGTAAACCGGTTTGCCAGGGGGTGTGCGTAGAAAATGTGATGG
TGTATGTTGAAAAGGGGTGGAGTTGGACTGATTGGGCCGATGGGTCGCTT
GAACTGTGTGATGCTCATGAAAGTTGGGAAAATGGTTgggaaaatatttt
tgatagagTTGCTGGAAAGAAATTTGCAGATGCTAGAAAGCGAATTCGAT
CTATGAAATTTGATGATTGTGTTCATGATTTCATTCACTTGAAAAATGTC
ACTGCTCAATGGAATGTTCCTCCCATTGAAGAAATTTGTGCTTTGGGGTT
CACCCATTCTTCACCATAG

Search form

rna-XM_004500832.3