rna-XM_004501787.3

Transcript Overview
Namerna-XM_004501787.3
Unique Namerna-XM_004501787.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length417
Productuncharacterized LOC101501075
References
External references for this mRNA
DatabaseAccession
GeneID101501075
GenBankXM_004501787.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:38758199..38758795 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascanL036Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0031Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0297Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0354Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascanL518Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caicanL0571Cicer arietinum ICC 4958 genome v2Cicer arietinum
caicanL0839Cicer arietinum ICC 4958 genome v2Cicer arietinum
canvrvR388Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR427Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvrvR446Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR475Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvuaR330Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR344Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR378Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR413Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR385Pisum sativum Cameor genome v1aPisum sativum
avjcanL224Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL499Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR308Cicer arietinum
cancarR346Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g096600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan04g070400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr09.104Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_28922Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014645266.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va04G019210.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.009G171000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_13307.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101501075gene-LOC101501075_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004501787.3-1exon-XM_004501787.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004501844.1cds-XP_004501844.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004501787.3_CaCDCfrontier-NCBI_v1rna-XM_004501787.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004501787.3_CaCDCfrontier-NCBI_v1rna-XM_004501787.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_004501787.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:1158825-1159241 FORWARD LENGTH=138)

HSP 1 Score: 70.4774 bits (171), Expect = 2.986e-16
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 0 
Query:    9 VVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAF--NLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCA 120
            VV FV  +  S AP      E C+R  +N   PP +   ++   +   +L   +C+D+ RA+ + +R TGK P NY  A+CN+FG++E KV+ Y+  ++      KL+   SCA
Sbjct:   27 VVFFVTFLAISAAPLNPQ--EACIRRNINRSQPPRSSSLETAKTSMFESLRDNLCKDMARAVMFYVRITGKFPSNYVKAMCNVFGNDEKKVKEYVLEKWLGG--SKLLSNVSCA 136
[Close]
BLAST of rna-XM_004501787.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:1158876-1159241 FORWARD LENGTH=121)

HSP 1 Score: 70.0922 bits (170), Expect = 3.649e-16
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 0 
Query:    9 VVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAF--NLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCA 120
            VV FV  +  S AP      E C+R  +N   PP +   ++   +   +L   +C+D+ RA+ + +R TGK P NY  A+CN+FG++E KV+ Y+  ++      KL+   SCA
Sbjct:   10 VVFFVTFLAISAAPLNPQ--EACIRRNINRSQPPRSSSLETAKTSMFESLRDNLCKDMARAVMFYVRITGKFPSNYVKAMCNVFGNDEKKVKEYVLEKWLGG--SKLLSNVSCA 119
[Close]
BLAST of rna-XM_004501787.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:6366397-6366753 FORWARD LENGTH=118)

HSP 1 Score: 56.225 bits (134), Expect = 6.207e-11
Identity = 27/87 (31.03%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:    7 MIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDN 93
            M +++F+ V + + + ++ +  E C++  +N   PPS+           L   +CRD+ RA+ +S+R TGK P +Y  A+CN+FG++
Sbjct:    5 MSIIVFLFVTIFTISASSLNPEETCIQRNINRSQPPSSSLEPKTSKFDFLVDKLCRDMARAVMFSVRITGKFPSHYVKAMCNVFGND 91
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YA99|A0A1S2YA99_CICAR (Uncharacterized protein LOC101501075 OS=Cicer arietinum OX=3827 GN=LOC101501075 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 1.918e-98
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 
Query:    1 MSPSHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSRLF 138
            MSPSHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSRLF
Sbjct:    1 MSPSHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSRLF 138
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A396J0D4|A0A396J0D4_MEDTR (Transmembrane protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0116581 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.118e-48
Identity = 90/144 (62.50%), Postives = 105/144 (72.92%), Query Frame = 0 
Query:    1 MSPSH----KMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPS----AHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSR 136
            MSPS     K+IVVMFVL M+T C P  ASTIEHCLRLKLNPPPP       HG +     F+L+R+VC+D FRA+G+S+R TGKLP +Y GALCN+FGDN+ K+EHYIKG F    F KLIDGRSCA +RKK HP  PSSL R
Sbjct:    1 MSPSMFFSPKIIVVMFVLAMIT-CVPAKASTIEHCLRLKLNPPPPAPRAALGHGTK-----FDLNRVVCKDAFRAVGHSVRVTGKLPWSYLGALCNVFGDNDQKIEHYIKGAFRVNDFIKLIDGRSCAIVRKKLHPKSPSSLPR 138
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NUD2|A0A2Z6NUD2_TRISU (Prolamin-like domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_136570 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.266e-48
Identity = 85/136 (62.50%), Postives = 99/136 (72.79%), Query Frame = 0 
Query:    1 MSPSHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSR 136
            MS S K+I+VMFVL M+T CAP  ASTIEHCLRLK  PPPP        +   F+LSRIVCRD+ RA+G+S+RS+GKLP  Y GALCNIF DNE K+E YIK  +  R  D+LIDGRSCA IRKK HP+ P SL R
Sbjct:    1 MSFSRKIIIVMFVLAMIT-CAPAKASTIEHCLRLKFYPPPP-PPQAVLGHRSRFDLSRIVCRDVLRAVGHSIRSSGKLPWRYLGALCNIFEDNEQKIEGYIKDTYKARDLDRLIDGRSCAIIRKKLHPISPLSLPR 134
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LNU0|A0A2K3LNU0_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g036199 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.032e-48
Identity = 84/136 (61.76%), Postives = 100/136 (73.53%), Query Frame = 0 
Query:    1 MSPSHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSR 136
            MS S K++VVMFVL M+T C+P  ASTIEHCLRLK  PPPP     A  +   F+LSRIVCRD+ R++G+S+RS+GKLP  Y GALCNIF DNE K+E YIK  +  R  D+LIDGRSCA IRKK HP+ P SL R
Sbjct:    5 MSFSRKIVVVMFVLAMIT-CSPAKASTIEHCLRLKFYPPPP-PPQAALGHRSGFDLSRIVCRDVLRSVGHSIRSSGKLPWRYLGALCNIFEDNEQKIEGYIKDTYKARDIDRLIDGRSCAIIRKKLHPISPLSLPR 138
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VA02|A0A072VA02_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25489525 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 8.775e-46
Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = 0 
Query:   11 MFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPS----AHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSR 136
            MFVL M+T C P  ASTIEHCLRLKLNPPPP       HG +     F+L+R+VC+D FRA+G+S+R TGKLP +Y GALCN+FGDN+ K+EHYIKG F    F KLIDGRSCA +RKK HP  PSSL R
Sbjct:    1 MFVLAMIT-CVPAKASTIEHCLRLKLNPPPPAPRAALGHGTK-----FDLNRVVCKDAFRAVGHSVRVTGKLPWSYLGALCNVFGDNDQKIEHYIKGAFRVNDFIKLIDGRSCAIVRKKLHPKSPSSLPR 124
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A392QN88|A0A392QN88_9FABA (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.300e-39
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = 0 
Query:   22 PTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSR 136
            P  ASTIEHCLRLK  PPPP     A  +   F+LSRIVCRD+ RA+G+S+RS+GKLP  Y GALCNIF DNE K+E YIK  +  R  ++LIDGRSCA IRKK HP+ P SL R
Sbjct:    1 PAKASTIEHCLRLKFYPPPP-PPQAALGHRSGFDLSRIVCRDVLRAVGHSIRSSGKLPWRYLGALCNIFEDNEQKIEGYIKDTYKARDLNRLIDGRSCAIIRKKLHPISPLSLPR 114
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U409|A0A1S3U409_VIGRR (Uncharacterized protein LOC106761696 OS=Vigna radiata var. radiata OX=3916 GN=LOC106761696 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.376e-34
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 0 
Query:    2 SPSHKMIVVMFVLVM--MTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLS 135
            SP+   + VM +LV   M++ A +TA+T+E CLRL+LNPPPPP A       +  +L+RI+CRD FRA+   +R+TGKLP +Y  ALC+IF DNE KVE  +   F P  F +L+ GR+CA+IRK+QH + PSSLS
Sbjct:    5 SPTTLFLSVMLLLVTGSMSAVAISTAATVERCLRLQLNPPPPPPARSESRSRL--DLNRIICRDTFRAVAVYLRTTGKLPSDYVVALCHIFHDNEKKVECQVARTFRPYDFHRLLAGRTCASIRKRQHAITPSSLS 138
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RFU6|A0A0S3RFU6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G232100 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.370e-31
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 0 
Query:    2 SPSHKMIVVMFVLVM--MTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLS 135
            SP+   + VM +LV   +++ A +T +T+E CLRL+LNPPPPP A+      +  +L+RI+CRD FR++   +R+TGKLP +Y  ALC+IF DNE KVE ++   F P  F  L+ GR+CATIRK+QH   PS LS
Sbjct:    5 SPTTLFLSVMLLLVTGSVSAVATSTTATVERCLRLQLNPPPPPPANSESRSRL--DLNRIICRDTFRSVAIFIRATGKLPPDYVAALCHIFHDNERKVERHVARTFRPYDFHTLLAGRTCATIRKRQHAGSPSPLS 138
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|V7AWF2|V7AWF2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G171100g PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.194e-31
Identity = 60/130 (46.15%), Postives = 85/130 (65.38%), Query Frame = 0 
Query:    4 SHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSS 133
            S  + VVM +L +M + +    S IE CLR +LNP PPP    ++ Y + F+ +RIVC+D+FR + +S+R TG+LPL+Y  ALC+IFGD+E  V+ Y+   FN   F  L  GRSCATIR++Q   P +S
Sbjct:    3 SRAIAVVMLLLPLMMTSSVAIPSPIEQCLRQRLNPAPPPPLD-SELYGL-FDFNRIVCKDMFRGVSHSLRITGELPLDYVLALCDIFGDDEYMVQSYVTLLFNTDDFHTLAGGRSCATIRRRQRANPHNS 130
[Close]
BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UCN1|A0A0L9UCN1_PHAAN (Secreted protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g070600 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.599e-30
Identity = 61/127 (48.03%), Postives = 87/127 (68.50%), Query Frame = 0 
Query:    9 VVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSYHMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHYIKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLS 135
            +++ V   +++ A +T +T+E CLRL+LNPPPPP A+      +  +L+RI+CRD FR++   +R+TGKLP +Y  ALC+IF DNE KVE ++   F P  F  L+ GR+CATIRK+QH   PS LS
Sbjct:    1 MLLLVTGSVSAVATSTTATVERCLRLQLNPPPPPPANSESRSRL--DLNRIICRDTFRSVAIFIRATGKLPPDYVAALCHIFHDNERKVERHVARTFRPYDFHTLLAGRTCATIRKRQHAGSPSPLS 125
The following BLAST results are available for this feature:
BLAST of rna-XM_004501787.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
|2.986e-1634.21Symbols: no symbol available | no full name availa... [more]
|3.649e-1634.21Symbols: no symbol available | no full name availa... [more]
|6.207e-1131.03Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004501787.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_004501787.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2YA99|A0A1S2YA99_CICAR1.918e-98100.00Uncharacterized protein LOC101501075 OS=Cicer arie... [more]
tr|A0A396J0D4|A0A396J0D4_MEDTR1.118e-4862.50Transmembrane protein OS=Medicago truncatula OX=38... [more]
tr|A0A2Z6NUD2|A0A2Z6NUD2_TRISU2.266e-4862.50Prolamin-like domain-containing protein OS=Trifoli... [more]
tr|A0A2K3LNU0|A0A2K3LNU0_TRIPR6.032e-4861.76Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A072VA02|A0A072VA02_MEDTR8.775e-4663.08Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A392QN88|A0A392QN88_9FABA4.300e-3961.74Uncharacterized protein (Fragment) OS=Trifolium me... [more]
tr|A0A1S3U409|A0A1S3U409_VIGRR2.376e-3450.74Uncharacterized protein LOC106761696 OS=Vigna radi... [more]
tr|A0A0S3RFU6|A0A0S3RFU6_PHAAN1.370e-3148.53Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|V7AWF2|V7AWF2_PHAVU4.194e-3146.15Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A0L9UCN1|A0A0L9UCN1_PHAAN4.599e-3048.03Secreted protein OS=Phaseolus angularis OX=3914 GN... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004501787.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004501787.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004501787.3; organism=Cicer arietinum; type=mRNA; length=417bp
ATGTCACCTTCACATAAAATGATTGTGGTGATGTTTGTTTTGGTCATGAT
GACGTCATGTGCCCCTACCACAGCCAGCACCATTGAACATTGCCTAAGGC
TAAAACTAAATCCACCACCACCTCCATCAGCACATGGGGCACAAAGTTAT
CATATGGCATTTAATTTGAGTCGCATTGTTTGTAGGGACATTTTTCGTGC
CATAGGATATTCTATGCGGTCAACGGGGAAATTACCTTTGAATTACTTTG
GTGCACTTTGTAACATCTTTGGTGATAATGAGGACAAGGTTGAGCATTAC
ATTAAGGGTAGATTTAATCCTCGTTATTTTGATAAACTAATTGATGGTCG
ATCTTGTGCTACCATTAGAAAGAAGCAACACCCTATGCCCCCTTCATCTT
TGTCTAGACTGTTTTAG
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protein sequence of rna-XM_004501787.3_CaCDCfrontier-NCBI_v1

>rna-XM_004501787.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004501787.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004501787.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=138bp
MSPSHKMIVVMFVLVMMTSCAPTTASTIEHCLRLKLNPPPPPSAHGAQSY
HMAFNLSRIVCRDIFRAIGYSMRSTGKLPLNYFGALCNIFGDNEDKVEHY
IKGRFNPRYFDKLIDGRSCATIRKKQHPMPPSSLSRLF
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mRNA from alignment at chr5:38758199..38758795-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004501787.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004501787.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004501787.3; organism=Cicer arietinum; type=mRNA; length=597bp; location=Sequence derived from: chr5:38758199..38758795- (Cicer arietinum
TTCACTCACAAAACAATCCAACAAACATTAACATTAGCAATGTCACCTTC
ACATAAAATGATTGTGGTGATGTTTGTTTTGGTCATGATGACGTCATGTG
CCCCTACCACAGCCAGCACCATTGAACATTGCCTAAGGCTAAAACTAAAT
CCACCACCACCTCCATCAGCACATGGGGCACAAAGTTATCATATGGCATT
TAATTTGAGTCGCATTGTTTGTAGGGACATTTTTCGTGCCATAGGATATT
CTATGCGGTCAACGGGGAAATTACCTTTGAATTACTTTGGTGCACTTTGT
AACATCTTTGGTGATAATGAGGACAAGGTTGAGCATTACATTAAGGGTAG
ATTTAATCCTCGTTATTTTGATAAACTAATTGATGGTCGATCTTGTGCTA
CCATTAGAAAGAAGCAACACCCTATGCCCCCTTCATCTTTGTCTAGACTG
TTTTAGATTGACTTATAATTTTATTTATACCATTAGTGATTCGATGTGTA
TGAATAAATGGATCTATATATGTTATTAGTCACTGTTTATTTTATTTATC
ATTCATTTAGATTAATTCTTTTAAATTCGAATTGTTATTGAACTGAA
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Coding sequence (CDS) from alignment at chr5:38758199..38758795-

>rna-XM_004501787.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004501787.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004501787.3; organism=Cicer arietinum; type=CDS; length=417bp; location=Sequence derived from: chr5:38758199..38758795- (Cicer arietinum
ATGTCACCTTCACATAAAATGATTGTGGTGATGTTTGTTTTGGTCATGAT
GACGTCATGTGCCCCTACCACAGCCAGCACCATTGAACATTGCCTAAGGC
TAAAACTAAATCCACCACCACCTCCATCAGCACATGGGGCACAAAGTTAT
CATATGGCATTTAATTTGAGTCGCATTGTTTGTAGGGACATTTTTCGTGC
CATAGGATATTCTATGCGGTCAACGGGGAAATTACCTTTGAATTACTTTG
GTGCACTTTGTAACATCTTTGGTGATAATGAGGACAAGGTTGAGCATTAC
ATTAAGGGTAGATTTAATCCTCGTTATTTTGATAAACTAATTGATGGTCG
ATCTTGTGCTACCATTAGAAAGAAGCAACACCCTATGCCCCCTTCATCTT
TGTCTAGACTGTTTTAG
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