rna-XM_004507635.3

Transcript Overview
Namerna-XM_004507635.3
Unique Namerna-XM_004507635.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length549
Productuncharacterized LOC101501221
References
External references for this mRNA
DatabaseAccession
GeneID101501221
GenBankXM_004507635.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr7chromosomechr7:1062388..1063581 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascanL071Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL037Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascanL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0235Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0412Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0556Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL317Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0801Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL045Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0854Cicer arietinum ICC 4958 genome v2Cicer arietinum
caicanL0861Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0929Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0988Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR732Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR825Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR566Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR517Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR611Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR533Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR567Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR577Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR698Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canpvR713Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR604Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR660Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR461Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR490Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR533Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuaR552Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR561Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuR590Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR600Pisum sativum Cameor genome v1aPisum sativum
canpsR617Pisum sativum Cameor genome v1aPisum sativum
avjcanL141Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL259Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR457Cicer arietinum
cancarR493Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014662301.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan01g336700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_017331Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan09g207800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_00598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_18676.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr03.1045Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va01G101140.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat04G0018400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun03g447100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va09G055560.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr06.1685Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.003G078300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.1g370680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_004527Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.4g177160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
jg38991.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat01G0490200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.006G149660.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat1g181120.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.1g453280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_26399Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg20804.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.4g230920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun06g161900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_09341Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014653513.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cr_02497.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_03370Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_22028.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_00628Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_22063.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004486101.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101501221gene-LOC101501221_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004507635.3-1exon-XM_004507635.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004507692.1cds-XP_004507692.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004507635.3_CaCDCfrontier-NCBI_v1rna-XM_004507635.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004507635.3_CaCDCfrontier-NCBI_v1rna-XM_004507635.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3945852-3946457 FORWARD LENGTH=201)

HSP 1 Score: 157.147 bits (396), Expect = 1.155e-48
Identity = 94/206 (45.63%), Postives = 126/206 (61.17%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTD---FREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDN---STRIVHR------------ASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKM------AANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MA+GRK + ++SER LG++Y+ G +  +  TD     EED+WS   D   ++  S G W++R    R  R       GGLSLAF++   S RIVH+               R E  +A+SAPVNVPDWSKI RV+SV S+H+ D+  + +   M+PPHEYLA+ ++          SVFEGVGRTLKGR+LRRVRDA+W+QTGF G
Sbjct:    1 MARGRKLTMSQSERYLGSSYSYGDSNGNSATDESELTEEDIWSHAVDHSPEMLESHGAWNTRDAVVRNGRVG-----GGLSLAFEDASSSPRIVHQIRGGGEGGGGGGGGGRVERQLASSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG 201
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: S40-6 | | chr1:22893218-22893829 FORWARD LENGTH=203)

HSP 1 Score: 140.584 bits (353), Expect = 4.440e-42
Identity = 102/210 (48.57%), Postives = 129/210 (61.43%), Query Frame = 0 
Query:    1 MAKGRKFST-NRSERLLGTNYTQGSTVNHEVTD---FREEDVWS--MVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFD--------NSTRIVHRASQRAE------HNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVND-SEMVPPHEYLA-----RGRKMAAN--SVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRK +T NRS+R LG+ YT G +  + VTD     EED+WS  ++ D   +   S G W+ RA   +  R      +GGLSLAF+        +S  IV +              +A+SAPVNVPDWSKI RVDSV S+H+LDD  D ++ S M+PPHEYLA     R RK+     SVF+GVGRTLKGR+LRRVRDA+W+QTGF G
Sbjct:    1 MAKGRKPTTMNRSDRYLGS-YTYGDSHGNSVTDELELGEEDIWSPAVIHDDTTENEESYGTWNLRATLGKNGR------VGGLSLAFEGSLVAPPSSSPMIVQKIHGGGGEGEEDRRKLASSAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFYG 203
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11639893-11640444 FORWARD LENGTH=183)

HSP 1 Score: 122.479 bits (306), Expect = 3.102e-35
Identity = 92/201 (45.77%), Postives = 117/201 (58.21%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNY-TQGSTVNHEVT---DFREEDVWSMVE-DRERDVNLSSGEWDSRA-----PSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVN-------DSEMVPPHEYLA-RGRKM-AANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            M KGR    +RSER LG++  +    V+ E T   +  EEDVWS+VE D  +++    G W++R+       WRR         GG       S   V    QR  H +ATSAPV VPDWSKIL+V+SV S+H+ ++  D         +S MVPPHEY+A R R     +SVF GVGRTLKGRD+RRVRDAVW+QTGF G
Sbjct:    1 MGKGRSLPISRSERFLGSHQQSDDHHVDGETTFELELMEEDVWSVVEPDEPKEL----GAWNARSLEASGSEWRRK--------GGRV-----SDLTVPSDGQRKRH-VATSAPVKVPDWSKILKVESVKSMHNNNNDNDNADVADCDWESAMVPPHEYVAARSRNGDGGSSVFLGVGRTLKGRDMRRVRDAVWSQTGFYG 183
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:16557482-16557928 REVERSE LENGTH=148)

HSP 1 Score: 78.9518 bits (193), Expect = 8.210e-19
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0 
Query:  104 PVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            P+NV +WSKIL  ++  S+ + DDG +      +PPHEYLA+ R MA+ SV EG+GRTLKGRD+ RVR+A+  +TGF
Sbjct:   75 PMNVQNWSKILGKENRKSIENDDDGGEGK----LPPHEYLAKTR-MASFSVHEGIGRTLKGRDMSRVRNAILEKTGF 146
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:24386247-24386738 FORWARD LENGTH=163)

HSP 1 Score: 77.7962 bits (190), Expect = 3.582e-18
Identity = 65/190 (34.21%), Postives = 94/190 (49.47%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHD----------LDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            MA G+ +    S R LGT+     T +    +F E D+++ +               S +P + R           +S +  +  +  +R S  +    A+S PVNVPDWSKILR    G   D           DD  + +  + +PPHE+LA+ R MA+ SV EGVGRTLKGRDL RVR+A++ + GF
Sbjct:    1 MATGKSYYARPSYRFLGTDQPSYFTASDSGLEFDESDLFNPIH--------------SDSPDFCRK----------ISSSVRSGKKSSNRPSAASSAAAASSLPVNVPDWSKILR----GEYRDNRRRSIEDNDDDDDDNEDGGDWLPPHEFLAKTR-MASFSVHEGVGRTLKGRDLSRVRNAIFEKFGF 161
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:769636-770136 FORWARD LENGTH=166)

HSP 1 Score: 74.3294 bits (181), Expect = 7.702e-17
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:  102 SAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSE-----------MVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            S PVN+PDWSKIL+ +  G  H + D    +D E           M+PPHEYLAR R+ ++ +V EG+G T KGRDLRR+R+A+W + GF
Sbjct:   78 SLPVNIPDWSKILKSEYRG--HAIPDDDSDDDDEDDDDSNDGGRRMIPPHEYLAR-RRGSSFTVHEGIGGTAKGRDLRRLRNAIWEKIGF 164
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2332163-2332669 REVERSE LENGTH=168)

HSP 1 Score: 71.633 bits (174), Expect = 7.104e-16
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 0 
Query:  101 TSAPVNVPDWSKIL------RVDSVGSLHDLDDGFDVNDSEMVPPHEYLARG---RKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            +SAP+NVPDWSK+       R  S    H  DD  + +D  MVPPHE++AR     ++++ S+ EGVGRTLKGRDL +VR+AV ++TGF
Sbjct:   78 SSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGF 166
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:12148513-12149001 REVERSE LENGTH=162)

HSP 1 Score: 71.2478 bits (173), Expect = 8.964e-16
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 0 
Query:   84 STRIVHRASQRAEHNMATSAPVNVPDWSKIL-------RVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFD 181
            + R +H  S   +   A+S PVNVPDWSKIL       R  S     D D+      +  VPPHE LA  R+MA+ SV EG GRTLKGRDL RVR+ ++   G +
Sbjct:   60 TNRQIHGGSDSGK--AASSLPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCGEGTRRVPPHELLA-NRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIE 161
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11653633-11654106 FORWARD LENGTH=157)

HSP 1 Score: 70.8626 bits (172), Expect = 1.241e-15
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 0 
Query:   86 RIVHRASQRAEHNMATSAPVNVPDWSKIL---RVDSVGSLHD--LDDGFDVNDSEMVPPHEYLARG---RKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            R + + ++ +     +SAP+N+PDWSK+    + ++   LH   +DD    ++  MVPPHE +A+     ++++ S+ EG+GRTLKGRDL + R+AV  +TGF
Sbjct:   44 RYIPKGNEVSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDD---DEGSMVPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGF 143
[Close]
BLAST of rna-XM_004507635.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:13533643-13534077 REVERSE LENGTH=144)

HSP 1 Score: 66.2402 bits (160), Expect = 4.752e-14
Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = 0 
Query:   22 QGSTVNHEV---TDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMAT----SAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEY-LARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            + S + HE+    DF+E+DVW +++  +    +SS    +  PS+              +L       I  R  QR E  MA     S PVNVPDWS + R  +            V D E V P EY L R R  +++SV EGVGR LKGRDL +VR+A+  QTGF
Sbjct:    2 EKSYMKHELWGDGDFQEDDVWDVLDGYQSPFMISSNH--TTKPSFSTQ-----------TLLPSEPRMIPER--QRTE-GMAPMRQQSVPVNVPDWSMVQRKKTK----------KVVDDENVSPEEYFLRRSRSSSSSSVMEGVGRKLKGRDLSKVRNAILKQTGF 142
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SAA7|S405_ARATH (Protein S40-5 OS=Arabidopsis thaliana OX=3702 GN=S40-5 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.106e-47
Identity = 94/206 (45.63%), Postives = 126/206 (61.17%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTD---FREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDN---STRIVHR------------ASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKM------AANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MA+GRK + ++SER LG++Y+ G +  +  TD     EED+WS   D   ++  S G W++R    R  R       GGLSLAF++   S RIVH+               R E  +A+SAPVNVPDWSKI RV+SV S+H+ D+  + +   M+PPHEYLA+ ++          SVFEGVGRTLKGR+LRRVRDA+W+QTGF G
Sbjct:    1 MARGRKLTMSQSERYLGSSYSYGDSNGNSATDESELTEEDIWSHAVDHSPEMLESHGAWNTRDAVVRNGRVG-----GGLSLAFEDASSSPRIVHQIRGGGEGGGGGGGGGRVERQLASSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG 201
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/Swiss-Prot
Match: sp|O80698|S406_ARATH (Protein S40-6 OS=Arabidopsis thaliana OX=3702 GN=S40-6 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.256e-41
Identity = 102/210 (48.57%), Postives = 129/210 (61.43%), Query Frame = 0 
Query:    1 MAKGRKFST-NRSERLLGTNYTQGSTVNHEVTD---FREEDVWS--MVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFD--------NSTRIVHRASQRAE------HNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVND-SEMVPPHEYLA-----RGRKMAAN--SVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRK +T NRS+R LG+ YT G +  + VTD     EED+WS  ++ D   +   S G W+ RA   +  R      +GGLSLAF+        +S  IV +              +A+SAPVNVPDWSKI RVDSV S+H+LDD  D ++ S M+PPHEYLA     R RK+     SVF+GVGRTLKGR+LRRVRDA+W+QTGF G
Sbjct:    1 MAKGRKPTTMNRSDRYLGS-YTYGDSHGNSVTDELELGEEDIWSPAVIHDDTTENEESYGTWNLRATLGKNGR------VGGLSLAFEGSLVAPPSSSPMIVQKIHGGGGEGEEDRRKLASSAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFYG 203
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SKN0|S404_ARATH (Protein S40-4 OS=Arabidopsis thaliana OX=3702 GN=S40-4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.655e-15
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 0 
Query:   84 STRIVHRASQRAEHNMATSAPVNVPDWSKIL-------RVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFD 181
            + R +H  S   +   A+S PVNVPDWSKIL       R  S     D D+      +  VPPHE LA  R+MA+ SV EG GRTLKGRDL RVR+ ++   G +
Sbjct:   60 TNRQIHGGSDSGK--AASSLPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCGEGTRRVPPHELLA-NRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIE 161
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LKA1|S407_ARATH (Protein S40-7 OS=Arabidopsis thaliana OX=3702 GN=S40-7 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 6.105e-11
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:  135 EMVPPHEYLARG---RKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            EM+PPHE +AR      + + SV EG GRTLKGRDLR+VR+AV+ +TGF
Sbjct:  193 EMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGF 241
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C7N7|S401_ARATH (Protein S40-1 OS=Arabidopsis thaliana OX=3702 GN=S40-1 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 6.883e-10
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0 
Query:   82 DNSTRIVHRASQRAEHN--------MATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKM----AANSVFEGVGRTLKGRDLRRVRDAVWNQTGF 180
            +NS R+ +++S+R++           ++S PVN+P     +R  S    +  DDG      +M+PPH  L  GR+M     A SV  G GRTLKGRDL RVR++V   TGF
Sbjct:   38 ENSERVWNKSSRRSKTTPLPSAVTAFSSSLPVNIP-----MRRYSTEEEYSDDDG----GRKMIPPH--LIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGF 137
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YNY2|A0A1S2YNY2_CICAR (Uncharacterized protein LOC101501221 OS=Cicer arietinum OX=3827 GN=LOC101501221 PE=3 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 5.254e-130
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG
Sbjct:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6M879|A0A2Z6M879_TRISU (Senescence regulator S40 OS=Trifolium subterraneum OX=3900 GN=TSUD_202720 PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.026e-93
Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERD----VNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDN--------STRIVH---RASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF+ NR+ERLLGT Y+Q ST  HEVTDFREEDVW+MVEDR+RD    V+ + GEWDSRA S RRNR+QDHRNLGGLS AF+N        S+RIVH   RAS RA   +ATSAPVNVPDWSKILRVDSV SLHD+D+GFD NDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG
Sbjct:    1 MAKGRKFTANRNERLLGTIYSQNSTATHEVTDFREEDVWNMVEDRDRDRDCDVSFNPGEWDSRAISRRRNRDQDHRNLGGLSQAFENPESNVATTSSRIVHNQYRASHRA---VATSAPVNVPDWSKILRVDSVESLHDMDEGFDDNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 194
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LSU9|A0A2K3LSU9_TRIPR (Senescence regulator OS=Trifolium pratense OX=57577 GN=L195_g037634 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 1.918e-92
Identity = 151/199 (75.88%), Postives = 164/199 (82.41%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRER------DVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDN--------STRIVH---RASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF+ NR+ERLLGT Y+Q ST  HEVTDFREE+VWSMVEDR+R      +VN +  EWDSR  S RRNR+QDHRNLGGLS AF+N        S+RIVH   RAS RA   +ATSAPVNVPDWSKILRVDSV SLHD+D+GFD NDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG
Sbjct:    1 MAKGRKFTANRNERLLGTIYSQNSTATHEVTDFREEEVWSMVEDRDRDRDRDREVNFTPDEWDSRPISRRRNRDQDHRNLGGLSQAFENPGSNVATTSSRIVHNQYRASHRA---VATSAPVNVPDWSKILRVDSVESLHDVDEGFDDNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 196
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4X6V5|A0A9D4X6V5_PEA (Senescence regulator OS=Pisum sativum OX=3888 GN=KIW84_040184 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.123e-87
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVN--LSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNS---------TRIVHRASQRA-EHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKFS NR+ERLLGTNY Q S+V+HEVTDFREEDVWS+V+DR+RD +   S GEWDSRA SW R RE++HR  GGLS AF++S         +RIVH   + +   N+ATSAPVNVPDWSKILRV+SV SLHD+DDGFD +  EMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG
Sbjct:    1 MAKGRKFSANRNERLLGTNYIQSSSVSHEVTDFREEDVWSVVDDRDRDRDVDFSPGEWDSRASSWSREREKEHRKFGGLSQAFEDSGSNVATTTTSRIVHHQYRASLGRNVATSAPVNVPDWSKILRVESVESLHDMDDGFDEDKLEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 194
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|G7JJ63|G7JJ63_MEDTR (Putative senescence regulator S40 OS=Medicago truncatula OX=3880 GN=11437577 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.329e-86
Identity = 136/186 (73.12%), Postives = 148/186 (79.57%), Query Frame = 0 
Query:    1 MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEH----NMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF+TNR+ERLLGTNY Q S   HEVTDFREEDVWS+VEDR+ +VN + G+WDSRAPS R N        GGLSL F+N    V   S R  H    N+ATSAPVNVPDWSKILRV+SV SLHD+DD    N+SEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG
Sbjct:    1 MAKGRKFTTNRNERLLGTNYIQSSNTTHEVTDFREEDVWSIVEDRDHNVNFTPGDWDSRAPSRRFNH-------GGLSLPFENPVSNVATTSSRNVHHQYRNVATSAPVNVPDWSKILRVESVESLHDMDDD---NESEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 176
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8JN66|A0A8B8JN66_ABRPR (Uncharacterized protein LOC113847836 OS=Abrus precatorius OX=3816 GN=LOC113847836 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 5.447e-84
Identity = 137/197 (69.54%), Postives = 155/197 (78.68%), Query Frame = 0 
Query:    1 MAKGRKFST-NRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERD--VNLSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDN-----STRIVHR-------ASQRAEHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKFST  RSER LGT Y QGST   + ++ REED+WS  EDR+RD  VN+S GEW+ RA   RRNREQ HR++GGLSLAF++     S+RIVH         S    H+MATSAPVNVPDWSKILRV SV SLH++DDGFD N+SEMVPPHEYLAR RKMAANSVFEGVGRTLKGRD+RRVRDAVW+QTGFDG
Sbjct:    1 MAKGRKFSTATRSERFLGTTYNQGSTAT-DPSELREEDLWSTAEDRDRDADVNVSPGEWEPRAQPRRRNREQGHRHVGGLSLAFEDPGSNASSRIVHHQYRAHDAVSSPRGHHMATSAPVNVPDWSKILRVGSVESLHEMDDGFDDNESEMVPPHEYLARSRKMAANSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG 196
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|V7CAI8|V7CAI8_PHAVU (Senescence regulator OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G078300g PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.286e-76
Identity = 130/204 (63.73%), Postives = 148/204 (72.55%), Query Frame = 0 
Query:    1 MAKGRKF-STNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRA-PSWRRNREQD-HRNLGGLSLAFDN--------STRIVHR----------ASQRA-EHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF +T RSER LGT Y+   +   E ++FREEDVWS  EDRE D   S G+W+ R  P  R +REQ  HR++GGLSLAF+N        +TRIVH           +S R   H MATSAPVNVPDWSKILR DSV SLH++D  FD NDSEMVPPHEYLAR R+MAANSVFEGVGRTLKGRD+RRVRDAVW+QTGFDG
Sbjct:   22 MAKGRKFPTTARSERFLGTTYSSQGSAAVEPSEFREEDVWSTPEDREGDFKASPGQWEPREWPRRRNSREQQVHRHVGGLSLAFENPNGSGGGGATRIVHHQYRAQHDTVSSSPRGRHHQMATSAPVNVPDWSKILRADSVESLHEMDVAFDDNDSEMVPPHEYLARSRQMAANSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG 225
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R9R6|A0A0S3R9R6_PHAAN (Senescence regulator S40 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G549400 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.091e-74
Identity = 126/206 (61.17%), Postives = 148/206 (71.84%), Query Frame = 0 
Query:    1 MAKGRKF-STNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRN--REQDHRNLGGLSLAFDN----------STRIVHR----------ASQRA-EHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF +T RSER  GT Y+   +   E ++FREEDVWS  EDRE DVN S G+W+ R    RRN   +Q HR++GGLSLAF++          +TRIVH           +S R   H MATSAPVNVPDWSKILRVDSV  +H++DD FD ND EMVPPHEYLAR R+MA+NSVFEGVGRTLKGRD+RRVR+AVW+QTGFDG
Sbjct:    1 MAKGRKFPATARSERFFGTIYSPQGSAAVEPSEFREEDVWSTPEDREGDVNASPGQWEPREWPRRRNSREQQGHRHVGGLSLAFEDPNGSSGGGGGATRIVHHQYRAQHDTVSSSPRGRHHQMATSAPVNVPDWSKILRVDSVELMHEMDDAFDDNDPEMVPPHEYLARSRQMASNSVFEGVGRTLKGRDMRRVREAVWSQTGFDG 206
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TTH9|A0A0L9TTH9_PHAAN (Senescence regulator S40 OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0018180 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.091e-74
Identity = 126/206 (61.17%), Postives = 148/206 (71.84%), Query Frame = 0 
Query:    1 MAKGRKF-STNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRN--REQDHRNLGGLSLAFDN----------STRIVHR----------ASQRA-EHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF +T RSER  GT Y+   +   E ++FREEDVWS  EDRE DVN S G+W+ R    RRN   +Q HR++GGLSLAF++          +TRIVH           +S R   H MATSAPVNVPDWSKILRVDSV  +H++DD FD ND EMVPPHEYLAR R+MA+NSVFEGVGRTLKGRD+RRVR+AVW+QTGFDG
Sbjct:    1 MAKGRKFPATARSERFFGTIYSPQGSAAVEPSEFREEDVWSTPEDREGDVNASPGQWEPREWPRRRNSREQQGHRHVGGLSLAFEDPNGSSGGGGGATRIVHHQYRAQHDTVSSSPRGRHHQMATSAPVNVPDWSKILRVDSVELMHEMDDAFDDNDPEMVPPHEYLARSRQMASNSVFEGVGRTLKGRDMRRVREAVWSQTGFDG 206
[Close]
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445G0T7|A0A445G0T7_GLYSO (Senescence regulator OS=Glycine soja OX=3848 GN=D0Y65_044565 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.861e-74
Identity = 130/199 (65.33%), Postives = 153/199 (76.88%), Query Frame = 0 
Query:    1 MAKGRKF-STNRSERLLGT-NYTQGSTVNHEVTDFREEDVWSMVEDRERDVNLSSGEWDSRAPSWRRN-RE-QDHRNLGGLSLAFDNS-----TRIVH---RASQRA---EHNMATSAPVNVPDWSKILRVDSVGSLHDLDDGFD--VNDSEMVPPHEYLARGRKMAANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG 182
            MAKGRKF +T R++R LG   Y+  ++   E+++FREEDVWS  EDR+RDVN   GEW++ AP  RR+ RE Q HR++GGLSLAF++      TRIVH   RA   A   +H MATSAPVNVPDWSKILRVDS   LH++DD FD   N+SEMVPPHEYLAR RKMAANSVFEGVGRTLKGRD+RRVRDAVW+QTGFDG
Sbjct:   37 MAKGRKFPTTTRTDRFLGMGTYSSQASAATELSEFREEDVWSTSEDRDRDVNAYPGEWEALAPPRRRSSRELQGHRHVGGLSLAFEDGSGGAGTRIVHHQYRAQHDAVSHQHQMATSAPVNVPDWSKILRVDS---LHEMDDVFDDNNNESEMVPPHEYLARSRKMAANSVFEGVGRTLKGRDMRRVRDAVWSQTGFDG 232
The following BLAST results are available for this feature:
BLAST of rna-XM_004507635.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
|1.155e-4845.63Symbols: no symbol available | no full name availa... [more]
|4.440e-4248.57Symbols: S40-6 | | chr1:22893218-22893829 FORWARD... [more]
|3.102e-3545.77Symbols: no symbol available | no full name availa... [more]
|8.210e-1953.25Symbols: no symbol available | no full name availa... [more]
|3.582e-1834.21Symbols: no symbol available | no full name availa... [more]
|7.702e-1747.78Symbols: no symbol available | no full name availa... [more]
|7.104e-1649.44Symbols: no symbol available | no full name availa... [more]
|8.964e-1644.76Symbols: no symbol available | no full name availa... [more]
|1.241e-1537.86Symbols: no symbol available | no full name availa... [more]
|4.752e-1436.53Symbols: no symbol available | no full name availa... [more]
back to top
BLAST of rna-XM_004507635.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9SAA7|S405_ARATH1.106e-4745.63Protein S40-5 OS=Arabidopsis thaliana OX=3702 GN=S... [more]
sp|O80698|S406_ARATH4.256e-4148.57Protein S40-6 OS=Arabidopsis thaliana OX=3702 GN=S... [more]
sp|Q9SKN0|S404_ARATH8.655e-1544.76Protein S40-4 OS=Arabidopsis thaliana OX=3702 GN=S... [more]
sp|Q9LKA1|S407_ARATH6.105e-1159.18Protein S40-7 OS=Arabidopsis thaliana OX=3702 GN=S... [more]
sp|Q9C7N7|S401_ARATH6.883e-1038.74Protein S40-1 OS=Arabidopsis thaliana OX=3702 GN=S... [more]
back to top
BLAST of rna-XM_004507635.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2YNY2|A0A1S2YNY2_CICAR5.254e-130100.00Uncharacterized protein LOC101501221 OS=Cicer arie... [more]
tr|A0A2Z6M879|A0A2Z6M879_TRISU1.026e-9377.66Senescence regulator S40 OS=Trifolium subterraneum... [more]
tr|A0A2K3LSU9|A0A2K3LSU9_TRIPR1.918e-9275.88Senescence regulator OS=Trifolium pratense OX=5757... [more]
tr|A0A9D4X6V5|A0A9D4X6V5_PEA4.123e-8773.20Senescence regulator OS=Pisum sativum OX=3888 GN=K... [more]
tr|G7JJ63|G7JJ63_MEDTR6.329e-8673.12Putative senescence regulator S40 OS=Medicago trun... [more]
tr|A0A8B8JN66|A0A8B8JN66_ABRPR5.447e-8469.54Uncharacterized protein LOC113847836 OS=Abrus prec... [more]
tr|V7CAI8|V7CAI8_PHAVU2.286e-7663.73Senescence regulator OS=Phaseolus vulgaris OX=3885... [more]
tr|A0A0S3R9R6|A0A0S3R9R6_PHAAN2.091e-7461.17Senescence regulator S40 OS=Vigna angularis var. a... [more]
tr|A0A0L9TTH9|A0A0L9TTH9_PHAAN2.091e-7461.17Senescence regulator S40 OS=Phaseolus angularis OX... [more]
tr|A0A445G0T7|A0A445G0T7_GLYSO2.861e-7465.33Senescence regulator OS=Glycine soja OX=3848 GN=D0... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007608Senescence regulator S40PFAMPF04520Senescence_regcoord: 32..180
e-value: 4.0E-37
score: 140.1
NoneNo IPR availablePANTHERPTHR46525EMB|CAB72159.1coord: 1..180

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004507635.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507635.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507635.3; organism=Cicer arietinum; type=mRNA; length=549bp
ATGGCGAAGGGTCGCAAATTCAGCACGAACCGAAGCGAACGTTTATTGGG
AACAAACTATACACAAGGCTCCACTGTGAATCATGAAGTAACTGATTTCA
GGGAAGAGGATGTGTGGTCCATGGTGGAAGATCGTGAACGCGACGTGAAT
TTGTCTTCCGGCGAGTGGGATTCACGCGCACCTTCCTGGCGTCGGAACAG
GGAGCAGGACCACCGTAACCTTGGCGGTTTGTCTTTGGCGTTCGATAATT
CAACGAGGATCGTCCATCGTGCGTCACAGAGGGCGGAGCATAATATGGCT
ACGTCAGCGCCGGTGAACGTGCCTGATTGGAGTAAGATACTCCGAGTTGA
CTCGGTGGGATCGTTGCATGATTTGGATGACGGTTTTGATGTTAATGACT
CGGAGATGGTTCCGCCGCACGAGTATTTGGCGCGTGGCCGGAAAATGGCG
GCAAATTCGGTTTTCGAAGGGGTGGGTCGGACTTTAAAGGGCCGTGACTT
GAGGCGGGTACGCGATGCTGTTTGGAACCAAACCGGGTTCGACGGCTGA
back to top

protein sequence of rna-XM_004507635.3_CaCDCfrontier-NCBI_v1

>rna-XM_004507635.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507635.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507635.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=182bp
MAKGRKFSTNRSERLLGTNYTQGSTVNHEVTDFREEDVWSMVEDRERDVN
LSSGEWDSRAPSWRRNREQDHRNLGGLSLAFDNSTRIVHRASQRAEHNMA
TSAPVNVPDWSKILRVDSVGSLHDLDDGFDVNDSEMVPPHEYLARGRKMA
ANSVFEGVGRTLKGRDLRRVRDAVWNQTGFDG
back to top

mRNA from alignment at chr7:1062388..1063581-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004507635.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507635.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507635.3; organism=Cicer arietinum; type=mRNA; length=1194bp; location=Sequence derived from: chr7:1062388..1063581- (Cicer arietinum
ATGACTCCAAAAGAAAAGGCCTATATATACACATCCAACAACATACACAC
AGCTTATGCCAAACCCAAACCAGGTTCTACCTTCTAAGGGGTAAAAGAGG
AAAACGCAATGGACTTTTACTTACTCATATTACAATAGTTTTTAGATTTG
ATTTTGCTTCGGTTTGCTATTAACGTCGCTAAATATTATGGCGAAGGGTC
GCAAATTCAGCACGAACCGAAGCGAACGTTTATTGGGAACAAACTATACA
CAAGGCTCCACTGTGAATCATGAAGTAACTGATTTCAGGGAAGAGGATGT
GTGGTCCATGGTGGAAGATCGTGAACGCGACGTGAATTTGTCTTCCGGCG
AGTGGGATTCACGCGCACCTTCCTGGCGTCGGAACAGGGAGCAGGACCAC
CGTAACCTTGGCGGTTTGTCTTTGGCGTTCGATAATTCAACGAGGATCGT
CCATCGTGCGTCACAGAGGGCGGAGCATAATATGGCTACGTCAGCGCCGG
TGAACGTGCCTGATTGGAGTAAGATACTCCGAGTTGACTCGGTGGGATCG
TTGCATGATTTGGATGACGGTTTTGATGTTAATGACTCGGAGATGGTTCC
GCCGCACGAGTATTTGGCGCGTGGCCGGAAAATGGCGGCAAATTCGGTTT
TCGAAGGGGTGGGTCGGACTTTAAAGGGCCGTGACTTGAGGCGGGTACGC
GATGCTGTTTGGAACCAAACCGGGTTCGACGGCTGAGTTGGACCGGACCG
GTGTTTTATATAATTCAAATTCATCCGTATTAATTGTTGTTGCTATTAAT
CATTTAAGTGTCAATCAGATTTAAGAGTGGTGGTCAGTAAAAAATTTTGA
GAAAAAAAATAAAAAAAACAAGTTTGATTTATTTGGGTTGTTAAAATTGG
ATGGGTGGGTTTTTTGGGGCTATGATTGGGTTGGGAGGACTCGTGTTATG
AGAGTCCAACTCCGTGGCCAGTGAGCCTAATTAATTAATCATATATATTT
GAATATGAATAATGTAATCCCGTTTTTGGACAAATATGTATCCCTGTAAC
TGCATAAGGAAGGGATTATATAATAATTATTTAAACTAAAATTTGATAAG
TTTGTACGGGAAAGACAAAGTATTTTAGTAATATTTTGATAATCTGTTCT
AATAGTAGCATTAATTTTTACAAGATTTAACGTTATATTATATA
back to top

Coding sequence (CDS) from alignment at chr7:1062388..1063581-

>rna-XM_004507635.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507635.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507635.3; organism=Cicer arietinum; type=CDS; length=549bp; location=Sequence derived from: chr7:1062388..1063581- (Cicer arietinum
ATGGCGAAGGGTCGCAAATTCAGCACGAACCGAAGCGAACGTTTATTGGG
AACAAACTATACACAAGGCTCCACTGTGAATCATGAAGTAACTGATTTCA
GGGAAGAGGATGTGTGGTCCATGGTGGAAGATCGTGAACGCGACGTGAAT
TTGTCTTCCGGCGAGTGGGATTCACGCGCACCTTCCTGGCGTCGGAACAG
GGAGCAGGACCACCGTAACCTTGGCGGTTTGTCTTTGGCGTTCGATAATT
CAACGAGGATCGTCCATCGTGCGTCACAGAGGGCGGAGCATAATATGGCT
ACGTCAGCGCCGGTGAACGTGCCTGATTGGAGTAAGATACTCCGAGTTGA
CTCGGTGGGATCGTTGCATGATTTGGATGACGGTTTTGATGTTAATGACT
CGGAGATGGTTCCGCCGCACGAGTATTTGGCGCGTGGCCGGAAAATGGCG
GCAAATTCGGTTTTCGAAGGGGTGGGTCGGACTTTAAAGGGCCGTGACTT
GAGGCGGGTACGCGATGCTGTTTGGAACCAAACCGGGTTCGACGGCTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007608Senescence_reg_S40