rna-XM_004507953.3
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-XM_004507953.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:6609545-6610555 REVERSE LENGTH=192) HSP 1 Score: 269.626 bits (688), Expect = 6.741e-93 Identity = 131/188 (69.68%), Postives = 152/188 (80.85%), Query Frame = 0 Query: 3 LSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTK-DQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 + +SEI KLNL+ H EGGF+AETFRD SV LSTS LPP +KVDR VSTSIYFLLPSG++SRLHRIP +ETWH Y+G+P+TVVEL + D +KFTCLG DL + DQ PQYTVPPNVWFGSFPT D S DG +KA RD E+H+SLVGCTCAPAFQF+DFELAK S L+S FPQ E LIT L++PE Sbjct: 6 VKSSEIVGKLNLRAHQEGGFFAETFRDSSVFLSTSQLPPTFKVDRAVSTSIYFLLPSGSVSRLHRIPMAETWHFYLGEPLTVVELYD-DGKLKFTCLGPDLFEGDQKPQYTVPPNVWFGSFPTKDVHFSQDGALLKAEARDSENHFSLVGCTCAPAFQFEDFELAKRSDLLSRFPQHESLITMLSYPE 192
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YPQ5|A0A1S2YPQ5_CICAR (Uncharacterized protein LOC101514621 OS=Cicer arietinum OX=3827 GN=LOC101514621 PE=4 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 1.283e-137 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE Sbjct: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MKZ4|A0A2Z6MKZ4_TRISU (DUF985 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_206630 PE=4 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 6.663e-123 Identity = 167/189 (88.36%), Postives = 176/189 (93.12%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSLSASEIA+KLNLQPHPEGGFYAETFRDHSV LSTS LPP+YKVDRPVSTSIYFLLPSGNMSRLHRIP SE WHHYIG+PITVVELNEKD+SVKFT LGSDLTKDQTPQYTVPPN+WFGSFPTNDFTVS DG F KAP RDGE+HYSLVGCTCAPAFQFQDFELAK S+L+S FPQLE L+T LTFPE Sbjct: 1 MSLSASEIARKLNLQPHPEGGFYAETFRDHSVQLSTSQLPPEYKVDRPVSTSIYFLLPSGNMSRLHRIPSSEVWHHYIGEPITVVELNEKDSSVKFTTLGSDLTKDQTPQYTVPPNIWFGSFPTNDFTVSADGAFAKAPERDGETHYSLVGCTCAPAFQFQDFELAKRSYLVSRFPQLESLVTALTFPE 189
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4X603|A0A9D4X603_PEA (DUF985 domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_040664 PE=4 SV=1) HSP 1 Score: 342.813 bits (878), Expect = 2.026e-118 Identity = 163/189 (86.24%), Postives = 172/189 (91.01%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSL ASEIA+KLNL PHPEGGFYAETFRDHSV LSTSHLPP+YKVDRPVST IYFLLPSGNMSRLHRIPCSETWHHYIG+PITVVELNE D+SVKFTC+GSDL KDQTPQYTVPPNVWFGSFPT+DFTVS DG F+K P RD ESHYSLVGCTCAP FQFQDFELAK S+L+S FPQ E LI TLTFPE Sbjct: 1 MSLLASEIARKLNLLPHPEGGFYAETFRDHSVHLSTSHLPPEYKVDRPVSTCIYFLLPSGNMSRLHRIPCSETWHHYIGEPITVVELNETDSSVKFTCVGSDLAKDQTPQYTVPPNVWFGSFPTSDFTVSADGSFLKGPERDAESHYSLVGCTCAPGFQFQDFELAKRSYLVSRFPQFETLINTLTFPE 189
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|G7JT65|G7JT65_MEDTR (Cupin family protein OS=Medicago truncatula OX=3880 GN=11441722 PE=2 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 5.822e-118 Identity = 165/190 (86.84%), Postives = 174/190 (91.58%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGG-FVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSLSASEIA+KLNLQPHPEGGFY ETFRDHSV LSTSHLP +YKVDRPVST IYFLLPSG MSRLHRIP SETWHHYIG+PITVVELNEKD+SVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPT+DF VS +GG FVK RDGE+HYSLVGCTCAP FQFQDFELAK S+LIS FPQLE L+TTLTFPE Sbjct: 1 MSLSASEIAQKLNLQPHPEGGFYIETFRDHSVQLSTSHLPSEYKVDRPVSTCIYFLLPSGTMSRLHRIPSSETWHHYIGEPITVVELNEKDSSVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTSDFAVSANGGSFVKGSERDGETHYSLVGCTCAPGFQFQDFELAKRSYLISRFPQLESLVTTLTFPE 190
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8JPG9|A0A8B8JPG9_ABRPR (Uncharacterized protein LOC113848152 OS=Abrus precatorius OX=3816 GN=LOC113848152 PE=4 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 3.335e-115 Identity = 158/190 (83.16%), Postives = 170/190 (89.47%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFV-KAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 M L+ASEIAKKLNLQPHPEGGFYAETFRDHS+LLSTS LPPQYKVDRPVSTSIYFLLPSG++SRLHRIPC+ETWHHYIGDPIT+VELNE D SVK TCLGSDL ++Q PQYTVPPNVWFGSFPT DFT+S DG F+ A RD ESHYSLVGCTCAPAFQFQDFELAK SHLI FP +EPL+T LTFPE Sbjct: 1 MGLTASEIAKKLNLQPHPEGGFYAETFRDHSLLLSTSQLPPQYKVDRPVSTSIYFLLPSGSISRLHRIPCAETWHHYIGDPITIVELNENDGSVKLTCLGSDLGENQVPQYTVPPNVWFGSFPTKDFTISADGAFLGAAAARDSESHYSLVGCTCAPAFQFQDFELAKRSHLIHRFPHMEPLVTALTFPE 190
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KQ75|A0A4D6KQ75_VIGUN (DUF985 domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g537 PE=4 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 6.497e-115 Identity = 158/189 (83.60%), Postives = 170/189 (89.95%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSL+ASEIAKKLNLQPHPEGGFY ETFRDHSV LSTS LPP+YKVDRPVSTSIYFLLPSG +SRLHRIPC+ETWHHYIGDPITVVELNEKD SVKFTCLGSDL ++Q PQYTV PNVWFGSFPTND+T S DG F A PRDGE +YSLVGCTCAPAFQ+QDFELAKPS+L++ FP EPLIT LTFPE Sbjct: 1 MSLTASEIAKKLNLQPHPEGGFYVETFRDHSVHLSTSQLPPEYKVDRPVSTSIYFLLPSGTLSRLHRIPCAETWHHYIGDPITVVELNEKDGSVKFTCLGSDLGENQMPQYTVAPNVWFGSFPTNDYTFSTDGVFKPAAPRDGERNYSLVGCTCAPAFQYQDFELAKPSYLLARFPHFEPLITALTFPE 189
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|V7CBA9|V7CBA9_PHAVU (DUF985 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G129600g PE=4 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 5.073e-114 Identity = 160/191 (83.77%), Postives = 170/191 (89.01%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGF--VKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSL+ASEIAKKLNLQPHPEGGFY ETFRDHSV LSTS LPP+YKVDRPVSTSIYFLLPSGN+SRLHRIPC+ETWHHYIGDP+TVVELNEKD SVKFTCLGSDL +Q PQYTVPPNVWFGSFPTNDFT S DG F APPRD E +YSLVGCTCAPAFQ+QDF+LAKPS L+ FP LEPLIT LTFPE Sbjct: 1 MSLTASEIAKKLNLQPHPEGGFYVETFRDHSVHLSTSQLPPEYKVDRPVSTSIYFLLPSGNLSRLHRIPCAETWHHYIGDPLTVVELNEKDGSVKFTCLGSDLGGNQIPQYTVPPNVWFGSFPTNDFTFSTDGVFKTASAPPRDCERNYSLVGCTCAPAFQYQDFQLAKPSDLLGRFPHLEPLITALTFPE 191
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A151SSK7|A0A151SSK7_CAJCA (DUF985 domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_004103 PE=4 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 1.053e-113 Identity = 153/189 (80.95%), Postives = 172/189 (91.01%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSL ASE+AKKLNL+PHPEGGFY ETFRDHS+ LSTS LPP+YKVDRPVSTSIYFL+PSG++SRLHRIPCSETWHHYIGDP+TVVELNEKD SVKFTCLGSDL++++ PQYTVPPNVWFGSFPT DFT SVDG F K PRD E +YSLVGCTCAPAFQ+QDFELAKPS+L++ FP L+PL+T LTFPE Sbjct: 1 MSLRASEVAKKLNLEPHPEGGFYVETFRDHSINLSTSQLPPEYKVDRPVSTSIYFLVPSGSVSRLHRIPCSETWHHYIGDPLTVVELNEKDGSVKFTCLGSDLSENEVPQYTVPPNVWFGSFPTKDFTFSVDGVFQKGAPRDSERNYSLVGCTCAPAFQYQDFELAKPSYLLARFPHLDPLVTALTFPE 189
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A371GP68|A0A371GP68_MUCPR (DUF985 domain-containing protein OS=Mucuna pruriens OX=157652 GN=CR513_25541 PE=4 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 1.803e-113 Identity = 153/189 (80.95%), Postives = 172/189 (91.01%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGFVKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSL+ASEIAKKLNL+ HPEGGFY ETFRDHS+ LSTS LPP+YKVDRPVSTSIYFL+PSG++SRLHRIPC+ETWHHYIGDP+TVVELNE D SVKFTCLGSDL+++Q PQYTVPPN+WFGSFPT DFT SVDG F +A PRD E +YSLVGCTCAPAFQ+QDFELAKPS+LI FPQL+PL+T LTFPE Sbjct: 1 MSLTASEIAKKLNLEAHPEGGFYVETFRDHSIHLSTSQLPPEYKVDRPVSTSIYFLVPSGSVSRLHRIPCAETWHHYIGDPLTVVELNENDGSVKFTCLGSDLSQNQVPQYTVPPNIWFGSFPTKDFTFSVDGVFQRAAPRDSERNYSLVGCTCAPAFQYQDFELAKPSYLIPRFPQLKPLLTALTFPE 189
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R8M4|A0A0S3R8M4_PHAAN (DUF985 domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G496000 PE=4 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 4.911e-113 Identity = 156/191 (81.68%), Postives = 171/191 (89.53%), Query Frame = 0 Query: 1 MSLSASEIAKKLNLQPHPEGGFYAETFRDHSVLLSTSHLPPQYKVDRPVSTSIYFLLPSGNMSRLHRIPCSETWHHYIGDPITVVELNEKDASVKFTCLGSDLTKDQTPQYTVPPNVWFGSFPTNDFTVSVDGGF--VKAPPRDGESHYSLVGCTCAPAFQFQDFELAKPSHLISHFPQLEPLITTLTFPE 189 MSL+ASEI KKLNLQPHPEGGFY ETFRDHSV LSTS LPP+YKVDRPVSTSIYFLLPSG SRLHRIPC+ETWHHYIGDP+T+VEL+EKD SVKFTCLGSDL ++Q PQYTVPPNVWFGSFPTND++ S DG F APPRDGE +YSLVGCTCAPAFQ+QDFELAKPS+L++ FP EPLITTLTFPE Sbjct: 1 MSLTASEITKKLNLQPHPEGGFYIETFRDHSVHLSTSQLPPEYKVDRPVSTSIYFLLPSGTFSRLHRIPCAETWHHYIGDPLTIVELDEKDGSVKFTCLGSDLGENQMPQYTVPPNVWFGSFPTNDYSFSTDGVFKTAAAPPRDGERNYSLVGCTCAPAFQYQDFELAKPSYLLARFPHFEPLITTLTFPE 191 The following BLAST results are available for this feature:
BLAST of rna-XM_004507953.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_004507953.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_004507953.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004507953.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507953.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507953.3; organism=Cicer arietinum; type=mRNA; length=570bpback to top protein sequence of rna-XM_004507953.3_CaCDCfrontier-NCBI_v1 >rna-XM_004507953.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507953.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507953.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=189bpback to top mRNA from alignment at chr7:3306408..3307580- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004507953.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507953.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507953.3; organism=Cicer arietinum; type=mRNA; length=1173bp; location=Sequence derived from: chr7:3306408..3307580- (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr7:3306408..3307580- >rna-XM_004507953.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004507953.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004507953.3; organism=Cicer arietinum; type=CDS; length=570bp; location=Sequence derived from: chr7:3306408..3307580- (Cicer arietinumback to top |