rna-XM_012714098.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_012714098.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:9875068-9876442 REVERSE LENGTH=177) HSP 1 Score: 120.939 bits (302), Expect = 7.818e-35 Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 0 Query: 82 RSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 +S+RHKK ++PKK K+KERS+SHRHKR K+ ++K E SS PV+LSKFL RDKDDG RRSAVSGKKILLK+DK+KEDK AESKRNELL FLNASFD Sbjct: 80 KSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKKGEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177
BLAST of rna-XM_012714098.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:9875068-9876442 REVERSE LENGTH=177) HSP 1 Score: 120.939 bits (302), Expect = 7.818e-35 Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 0 Query: 82 RSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 +S+RHKK ++PKK K+KERS+SHRHKR K+ ++K E SS PV+LSKFL RDKDDG RRSAVSGKKILLK+DK+KEDK AESKRNELL FLNASFD Sbjct: 80 KSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKKGEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E1A3|A0A1S3E1A3_CICAR (Protein FAM133B OS=Cicer arietinum OX=3827 GN=LOC105851833 PE=4 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 8.953e-114 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 Query: 1 KRRRRHHRHSYDSDSYSSSSLSDHSRSESSSDSEQETSHRSKRHKKRSESSSDSEQETSHRSKRHKKRSESSSDSEQETSHRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 KRRRRHHRHSYDSDSYSSSSLSDHSRSESSSDSEQETSHRSKRHKKRSESSSDSEQETSHRSKRHKKRSESSSDSEQETSHRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD Sbjct: 1 KRRRRHHRHSYDSDSYSSSSLSDHSRSESSSDSEQETSHRSKRHKKRSESSSDSEQETSHRSKRHKKRSESSSDSEQETSHRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151TVU2|A0A151TVU2_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010429 PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.248e-60 Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0 Query: 70 ESSSDSEQETSHRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 E+SSDSE ETSHRS RHK+SDRPKKNKEKERS+SHRHKR+KH +KEKQ+DERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 84 ETSSDSEHETSHRSNRHKRSDRPKKNKEKERSKSHRHKRQKHKVKEKQHDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 193
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445LG39|A0A445LG39_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008027 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.355e-55 Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 0 Query: 81 HRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 HRSKRHKKSDRPKKNKEK+RS+SHRHKR+KH +KEKQ+DERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 87 HRSKRHKKSDRPKKNKEKDRSKSHRHKRQKHKVKEKQHDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 185
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|C6T1E5|C6T1E5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500332 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 5.132e-54 Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = 0 Query: 81 HRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 HRSKRHKKSDRPKKNKEK+RS+SHRHKR+KH +KEKQ+DERSSSPVQLSKFLG DKDDGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 87 HRSKRHKKSDRPKKNKEKDRSKSHRHKRQKHKVKEKQHDERSSSPVQLSKFLGHDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 185
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445FKJ0|A0A445FKJ0_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_052349 PE=4 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 9.586e-54 Identity = 90/99 (90.91%), Postives = 97/99 (97.98%), Query Frame = 0 Query: 81 HRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 HRSKRHKKSDRPKKNKEK++S+SHRHK +KH +KEKQ+DERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 85 HRSKRHKKSDRPKKNKEKDQSKSHRHKWQKHKVKEKQHDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 183
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|I1NBV0|I1NBV0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100811105 PE=4 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 9.586e-54 Identity = 90/99 (90.91%), Postives = 97/99 (97.98%), Query Frame = 0 Query: 81 HRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 HRSKRHKKSDRPKKNKEK++S+SHRHK +KH +KEKQ+DERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 85 HRSKRHKKSDRPKKNKEKDQSKSHRHKWQKHKVKEKQHDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 183
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KQ44|A0A4D6KQ44_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g1415 PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 2.184e-53 Identity = 90/99 (90.91%), Postives = 97/99 (97.98%), Query Frame = 0 Query: 81 HRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 HRSKRHK+SDRPKKNKEK+RS+SH HKR+KH +KEKQ+DERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 89 HRSKRHKRSDRPKKNKEKDRSKSHHHKRQKHKVKEKQHDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 187
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7IF00|A0A1J7IF00_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_01049 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.067e-52 Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 0 Query: 78 ETSHRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 ET+HRSKRHKKSDR KKNKEK+RS+SHRHKR+KH LKEKQ+ ER SSPVQLSKFLGRDKDD VRRSAVSGKKILLKLDKTKEDK AESKRNELLNFLNASFD Sbjct: 83 ETTHRSKRHKKSDRSKKNKEKDRSKSHRHKRQKHKLKEKQHGERISSPVQLSKFLGRDKDDSVRRSAVSGKKILLKLDKTKEDKAAESKRNELLNFLNASFD 184
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|V7BLX9|V7BLX9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G088300g PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 8.405e-52 Identity = 88/99 (88.89%), Postives = 96/99 (96.97%), Query Frame = 0 Query: 81 HRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 HRSKRHK+SDRPKKNKEK+RS+SH HKR KH +KEKQ+DER+SSPVQLSKFLGRDK+DGVRRSAVSGKKILLKL+KTKEDKVAESKRNELLNFLNASFD Sbjct: 85 HRSKRHKRSDRPKKNKEKDRSKSHHHKRPKHKVKEKQHDERNSSPVQLSKFLGRDKNDGVRRSAVSGKKILLKLEKTKEDKVAESKRNELLNFLNASFD 183
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4PD56|A0A6A4PD56_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00003983 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.168e-51 Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0 Query: 79 TSHRSKRHKKSDRPKKNKEKERSRSHRHKRKKHNLKEKQNDERSSSPVQLSKFLGRDKDDGVRRSAVSGKKILLKLDKTKEDKVAESKRNELLNFLNASFD 179 T+HRSKRHKKSDR KKNKEK RS+SHRHKR+KH LKEKQ+ ER SSPVQLSKFLGRDKDD VRRSAVSGKKILLKLDKTKEDK AESKRNELLNFLNASFD Sbjct: 82 TTHRSKRHKKSDRSKKNKEKGRSKSHRHKRQKHKLKEKQHGERISSPVQLSKFLGRDKDDSVRRSAVSGKKILLKLDKTKEDKAAESKRNELLNFLNASFD 182 The following BLAST results are available for this feature:
BLAST of rna-XM_012714098.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_012714098.2 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_012714098.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_012714098.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_012714098.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_012714098.2; organism=Cicer arietinum; type=mRNA; length=540bpback to top protein sequence of rna-XM_012714098.2_CaCDCfrontier-NCBI_v1 >rna-XM_012714098.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_012714098.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_012714098.2_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=179bpback to top mRNA from alignment at chr3:37918333..37920755+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_012714098.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_012714098.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_012714098.2; organism=Cicer arietinum; type=mRNA; length=2423bp; location=Sequence derived from: chr3:37918333..37920755+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr3:37918333..37920755+ >rna-XM_012714098.2_CaCDCfrontier-NCBI_v1 ID=rna-XM_012714098.2_CaCDCfrontier-NCBI_v1; Name=rna-XM_012714098.2; organism=Cicer arietinum; type=CDS; length=540bp; location=Sequence derived from: chr3:37918333..37920755+ (Cicer arietinumback to top |