rna-XM_014637349.2

Transcript Overview


Name	rna-XM_014637349.2
Unique Name	rna-XM_014637349.2_VrVC1973A-SNU_v1
Type	mRNA
Organism	Vigna radiata (Mung bean, green gram)
Sequence length	348
Product	uncharacterized protein At2g27730, mitochondrial

References

External references for this mRNA


Database	Accession
GeneID	106755236
Genbank	XM_014637349.2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr02	chromosome	chr02:9287179..9289739 -	Vigna radiata cv. VC1973A genome v6.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna radiata cv. VC1973A genome v6.0	2023-06-13
InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL	2023-06-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
asvrvL092	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anvrvL0278	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvrvL402	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anvrvL0920	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL0925	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL1009	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL1068	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caivrvL044	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caivrvL225	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cavrvL192	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavrvL515	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
crvrvL030	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crvrvL222	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ccvrvL0857	Cajanus cajan Asha genome v1.0	Cajanus cajan
pvvrvL020	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvrvL146	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
psvrvL636	Pisum sativum Cameor genome v1a	Pisum sativum
tifvrvL558	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvrvL654	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vrvvrvR102	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvssR224	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvssR242	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvssR274	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvuR194	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvvuaR176	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvzwsR188	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuR198	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvvuaR180	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvzwsR208	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuaR197	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvvuR216	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvzwsR226	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvrvL175	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvrvL486	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvrvL052	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvrvL343	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvrvL028		Cicer arietinum
carvrvL176		Cicer arietinum
carvrvL478		Cicer arietinum
ccavrvL089	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL212	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL302	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL399	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vrvvumR219	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvumR226	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvumR246	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvvaR222	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR248	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR264	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvstR207	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR213	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR235	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvrvL347	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvrvL467	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvrvL509	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvrvL016	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvrvL140	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vrvvunR188	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vrvvunR191	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vrvvunR209	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Vigst.06G147900.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-XM_004506131.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
jg7735.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vfaba.Tiffany.R1.6g014800.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Va08G058840.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-TanjilR_03167	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
evm.model.Chr11.1213	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Psat7g187720.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-TanjilR_17083	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vum_06G01077.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigan.06G164400.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
XM_058878949.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
LR48_mrnaVigan08g136600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
rna-KK1_022359	Cajanus cajan Asha genome v1.0	Cajanus cajan
Ca_16496	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Psat07G0440400-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC106755236	gene-LOC106755236_VrVC1973A-SNU_v1	Vigna radiata	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_014637349.2-4	exon-XM_014637349.2-4_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014637349.2-3	exon-XM_014637349.2-3_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014637349.2-2	exon-XM_014637349.2-2_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014637349.2-1	exon-XM_014637349.2-1_VrVC1973A-SNU_v1	Vigna radiata	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_014492835.1	cds-XP_014492835.1_VrVC1973A-SNU_v1_3	Vigna radiata	CDS
cds-XP_014492835.1	cds-XP_014492835.1_VrVC1973A-SNU_v1_2	Vigna radiata	CDS
cds-XP_014492835.1	cds-XP_014492835.1_VrVC1973A-SNU_v1	Vigna radiata	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_014637349.2_VrVC1973A-SNU_v1	rna-XM_014637349.2_VrVC1973A-SNU_v1	Vigna radiata	polypeptide
rna-XM_014637349.2_VrVC1973A-SNU_v1	rna-XM_014637349.2_VrVC1973A-SNU_v1-protein	Vigna radiata	polypeptide

Homology

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9ZUX4|UMP2_ARATH (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.156e-25
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAE---RVSTDKHRNYAVVAGTITILGALGWYLK-GTAKKPEVQD 115
            MA R A R  SRR FSSG  K+LSEEE+AAEN + KK EQ+KL+KLAR+GP  +A+  GS  +AK +G+  + ASAE   +VS DK+RNYAVVAG + I+G++GWYLK G  K+PEVQ+
Sbjct:    1 MATRNALRIVSRR-FSSG--KVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAA--GSASEAKVAGATAS-ASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113

[Close]

BLAST of rna-XM_014637349.2 vs. Araport11
Match: AT2G27730.4 (| copper ion binding protein | Chr2:11820056-11820867 REVERSE LENGTH=113 | 201606)

HSP 1 Score: 93.5893 bits (231), Expect = 7.321e-26
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAE---RVSTDKHRNYAVVAGTITILGALGWYLK-GTAKKPEVQD 115
            MA R A R  SRR FSSG  K+LSEEE+AAEN + KK EQ+KL+KLAR+GP  +A+  GS  +AK +G+  + ASAE   +VS DK+RNYAVVAG + I+G++GWYLK G  K+PEVQ+
Sbjct:    1 MATRNALRIVSRR-FSSG--KVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAA--GSASEAKVAGATAS-ASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113

[Close]

BLAST of rna-XM_014637349.2 vs. Araport11
Match: AT2G27730.3 (| copper ion binding protein | Chr2:11820056-11820867 REVERSE LENGTH=113 | 201606)

HSP 1 Score: 93.5893 bits (231), Expect = 7.321e-26
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAE---RVSTDKHRNYAVVAGTITILGALGWYLK-GTAKKPEVQD 115
            MA R A R  SRR FSSG  K+LSEEE+AAEN + KK EQ+KL+KLAR+GP  +A+  GS  +AK +G+  + ASAE   +VS DK+RNYAVVAG + I+G++GWYLK G  K+PEVQ+
Sbjct:    1 MATRNALRIVSRR-FSSG--KVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAA--GSASEAKVAGATAS-ASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113

[Close]

BLAST of rna-XM_014637349.2 vs. Araport11
Match: AT2G27730.2 (| copper ion binding protein | Chr2:11820056-11820867 REVERSE LENGTH=113 | 201606)

HSP 1 Score: 93.5893 bits (231), Expect = 7.321e-26
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAE---RVSTDKHRNYAVVAGTITILGALGWYLK-GTAKKPEVQD 115
            MA R A R  SRR FSSG  K+LSEEE+AAEN + KK EQ+KL+KLAR+GP  +A+  GS  +AK +G+  + ASAE   +VS DK+RNYAVVAG + I+G++GWYLK G  K+PEVQ+
Sbjct:    1 MATRNALRIVSRR-FSSG--KVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAA--GSASEAKVAGATAS-ASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113

[Close]

BLAST of rna-XM_014637349.2 vs. Araport11
Match: AT2G27730.1 (| copper ion binding protein | Chr2:11820056-11820867 REVERSE LENGTH=113 | 201606)

HSP 1 Score: 93.5893 bits (231), Expect = 7.321e-26
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAE---RVSTDKHRNYAVVAGTITILGALGWYLK-GTAKKPEVQD 115
            MA R A R  SRR FSSG  K+LSEEE+AAEN + KK EQ+KL+KLAR+GP  +A+  GS  +AK +G+  + ASAE   +VS DK+RNYAVVAG + I+G++GWYLK G  K+PEVQ+
Sbjct:    1 MATRNALRIVSRR-FSSG--KVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAA--GSASEAKVAGATAS-ASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SC59|A0A0S3SC59_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G164400 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.049e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V7A4|A0A0L9V7A4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g136600 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.049e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TGE7|A0A1S3TGE7_VIGRR (uncharacterized protein At2g27730, mitochondrial OS=Vigna radiata var. radiata OX=3916 GN=LOC106755236 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.049e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6LHL7|A0A4D6LHL7_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2570 PE=4 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.808e-73
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSG--KILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSG  KILSEEEKAAENAYFKKAEQ+KLEKLARKGPQPEASSGGSV DAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGSGKILSEEEKAAENAYFKKAEQEKLEKLARKGPQPEASSGGSVTDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 117

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|V7AFR3|V7AFR3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G095100g PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 8.239e-73
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGK+LSEEE+AAENAYFKKAEQ+KLEKLARKGPQPEA SGGSVIDAKPS SGHTGASAERVSTDKHRNYAVVAGTITILGALGWY+KGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKVLSEEERAAENAYFKKAEQEKLEKLARKGPQPEAGSGGSVIDAKPSVSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYIKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|I1LRH8|I1LRH8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G090500 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.234e-70
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQ+KLEKLARKGPQPEA SGGSV DAKPS SGH G +A+RVSTDK+RNYAVVAGT+TILGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQEKLEKLARKGPQPEAGSGGSVTDAKPSSSGHAGTTADRVSTDKYRNYAVVAGTVTILGALGWYLKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445HN81|A0A445HN81_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_033790 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.234e-70
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQ+KLEKLARKGPQPEA SGGSV DAKPS SGH G +A+RVSTDK+RNYAVVAGT+TILGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQEKLEKLARKGPQPEAGSGGSVTDAKPSSSGHAGTTADRVSTDKYRNYAVVAGTVTILGALGWYLKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445I3Y9|A0A445I3Y9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030127 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.450e-69
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQ+KLEKLARKGPQ EA SGGSV DAKPS SGHTG S +RVSTDK+RNYAVVAGT+T+LGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQEKLEKLARKGPQSEAVSGGSVTDAKPSSSGHTGTSVDRVSTDKYRNYAVVAGTVTMLGALGWYLKGTAKKPEVQD 115

[Close]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|I1LKQ4|I1LKQ4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100782407 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.450e-69
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQ+KLEKLARKGPQ EA SGGSV DAKPS SGHTG S +RVSTDK+RNYAVVAGT+T+LGALGWYLKGTAKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQEKLEKLARKGPQSEAVSGGSVTDAKPSSSGHTGTSVDRVSTDKYRNYAVVAGTVTMLGALGWYLKGTAKKPEVQD 115

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BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Match: tr|C6T1F3|C6T1F3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.649e-69
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0

Query:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKGPQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGALGWYLKGTAKKPEVQD 115
            MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQ+KLEKLARKGPQPEA SGGSV DAKPS SGH G +A+RVSTDK+RNYAVVAGT+TILGALGWYLKG AKKPEVQD
Sbjct:    1 MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQEKLEKLARKGPQPEAGSGGSVTDAKPSSSGHAGTTADRVSTDKYRNYAVVAGTVTILGALGWYLKGAAKKPEVQD 115

The following BLAST results are available for this feature:

BLAST of rna-XM_014637349.2 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_014637349.2 vs. Araport11
BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL

BLAST of rna-XM_014637349.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
sp\|Q9ZUX4\|UMP2_ARATH	7.156e-25	57.98	Uncharacterized protein At2g27730, mitochondrial O...	[more]

BLAST of rna-XM_014637349.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 4


Match Name	E-value	Identity	Description
AT2G27730.4	7.321e-26	57.98	\| copper ion binding protein \| Chr2:11820056-11820...	[more]
AT2G27730.3	7.321e-26	57.98	\| copper ion binding protein \| Chr2:11820056-11820...	[more]
AT2G27730.2	7.321e-26	57.98	\| copper ion binding protein \| Chr2:11820056-11820...	[more]
AT2G27730.1	7.321e-26	57.98	\| copper ion binding protein \| Chr2:11820056-11820...	[more]

BLAST of rna-XM_014637349.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A0S3SC59\|A0A0S3SC59_PHAAN	1.049e-76	100.00	Uncharacterized protein OS=Vigna angularis var. an...	[more]
tr\|A0A0L9V7A4\|A0A0L9V7A4_PHAAN	1.049e-76	100.00	Uncharacterized protein OS=Phaseolus angularis OX=...	[more]
tr\|A0A1S3TGE7\|A0A1S3TGE7_VIGRR	1.049e-76	100.00	uncharacterized protein At2g27730, mitochondrial O...	[more]
tr\|A0A4D6LHL7\|A0A4D6LHL7_VIGUN	2.808e-73	96.58	Uncharacterized protein OS=Vigna unguiculata OX=39...	[more]
tr\|V7AFR3\|V7AFR3_PHAVU	8.239e-73	94.78	Uncharacterized protein OS=Phaseolus vulgaris OX=3...	[more]
tr\|I1LRH8\|I1LRH8_SOYBN	5.234e-70	91.30	Uncharacterized protein OS=Glycine max OX=3847 GN=...	[more]
tr\|A0A445HN81\|A0A445HN81_GLYSO	5.234e-70	91.30	Uncharacterized protein OS=Glycine soja OX=3848 GN...	[more]
tr\|A0A445I3Y9\|A0A445I3Y9_GLYSO	4.450e-69	90.43	Uncharacterized protein OS=Glycine soja OX=3848 GN...	[more]
tr\|I1LKQ4\|I1LKQ4_SOYBN	4.450e-69	90.43	Uncharacterized protein OS=Glycine max OX=3847 GN=...	[more]
tr\|C6T1F3\|C6T1F3_SOYBN	4.649e-69	90.43	Uncharacterized protein OS=Glycine max OX=3847 PE=...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..82
IPR045284	At2g27730-like	PANTHER	PTHR33878	OS08G0559000 PROTEIN	coord: 1..113

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr02:9287179..9289739-
coding sequence from alignment at chr02:9287179..9289739-

mRNA sequence

>rna-XM_014637349.2_VrVC1973A-SNU_v1 ID=rna-XM_014637349.2_VrVC1973A-SNU_v1; Name=rna-XM_014637349.2; organism=Vigna radiata; type=mRNA; length=348bp
ATGGCTGCGCGTGTGGCTGCACGGTACGGATCTAGAAGGTTGTTTAGCAG
TGGTTCTGGAAAAATACTCAGCGAGGAGGAGAAGGCTGCAGAAAATGCTT
ACTTTAAGAAAGCTGAGCAAGATAAGTTGGAGAAGCTTGCCCGCAAGGGT
CCTCAACCAGAAGCAAGCTCAGGGGGTTCAGTAATTGATGCCAAACCAAG
TGGCTCAGGACACACTGGAGCATCAGCTGAAAGAGTTTCAACTGACAAGC
ACCGGAACTATGCAGTTGTAGCTGGCACCATAACAATTCTTGGGGCTCTG
GGGTGGTACCTTAAGGGCACTGCAAAGAAGCCAGAAGTGCAGGATTGA

protein sequence of rna-XM_014637349.2_VrVC1973A-SNU_v1

>rna-XM_014637349.2_VrVC1973A-SNU_v1 ID=rna-XM_014637349.2_VrVC1973A-SNU_v1; Name=rna-XM_014637349.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=115bp
MAARVAARYGSRRLFSSGSGKILSEEEKAAENAYFKKAEQDKLEKLARKG
PQPEASSGGSVIDAKPSGSGHTGASAERVSTDKHRNYAVVAGTITILGAL
GWYLKGTAKKPEVQD

mRNA from alignment at chr02:9287179..9289739-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_014637349.2_VrVC1973A-SNU_v1 ID=rna-XM_014637349.2_VrVC1973A-SNU_v1; Name=rna-XM_014637349.2; organism=Vigna radiata; type=mRNA; length=2561bp; location=Sequence derived from: chr02:9287179..9289739- (Vigna radiata
TCCAAATACTTGGTGCGAATGCAAAGGCAGAACAGAGTAATTCCAAACGG
TGCCGTATATGAACCCTCAACCACAAGGGAAGGGCTTCAACACTAGCATA
ACTCACATTGCTTCTGCTTCCTAATCTCTGCGCTCTACCCTGAATCCAGT
CTGGTAATTATTCCGATCTTTGTTATTACAATTTTAATGTTTTCTTTGCA
ATTTTTTTCAGTAAAGCTTGATCGGGTTTTGTATCTCTCGGGAATCGGTG
TGTAGGAACTTCCGAAAATATACAATGTTTTAAGCTGGCTAGAGTCAAGT
TTTCGCATCACTTGTTTATTTAACCAATCCACGAAAATACGAGAGATTTT
CAGTTTTAGTCTTAATATAGCGTCATTTGTTGGAAAACCCCATAAGATTT
GCTTACCACTTTTATGCTTTCTTCTTGCTATATGCACAATCTGAAATTGT
TGAGATTTTTGGGAATGTTAGGAATATGTGGAATTGAACTCTGATTTTAA
TGTGCCTTTGTTTTTAATTAATTCAACGTCGACCTCAAGATTTTTTGTTT
TATTTGCAGTGGAGAAGAAATATAACTAATTGCAATGGCTGCGCGTGTGG
CTGCACGGTACGGATCTAGAAGGTTGTTTAGCAGTGGTTCTGGAAAAATA
CTCAGCGAGGAGGAGAAGGCTGCAGAAAATGCTTACTTTAAGGTAGGGTG
GGTCTGTGCATTGTCTTAGTTAAGACTTAGAGGGATTTTTGTGTGAAGGG
GTATGTGATCTGAGACTATTTCTCTGCTTTCACTCAACAGCTTAAGTTTT
TGGTATTTGAAAAAGTTGCTGAGGAGCATGTGTGATGAGTTTTTATGAAA
CATTCTTAGAATTCATGTTGAAACCAAAATTTGTAGAAAATTTGCTTCTA
GCATGCATTGATGTTAAAAAAATATGATATTCACTTATGTTAGTACAGAC
AAATTTATGCATCATTTGAGTTATTATTTTCTAAAATGCATTGAAATTTT
TTGTTTGTTTTAAACGATACTGCTTTGGCCTTTACTAGTCTATTGAATTA
TTTGGATAGTCTTATCAGTATGTTGTTAGGATCATTCGTATTGTTTCATG
CTCTAACTTCTAACATAAGGAAACAATTACCTGTTCATTTTTGTGCTCGG
CTAATATTCAATTATAGTCTAGTAGTTGCCCACAAAATAGATTACTGTTC
AACATCTTCGTCATGTTATTAAAAATATAATGGTATAGATCCATCTCTTT
TGCCATATCAATCTATTACCGTGGAGAAAGTTTCTCCGTCTGGTTTCTAT
AGTTTCCTTACATCAGTGGAGGTTTGTGCTTGACACTAGCATACATGTGT
TCATTTGTTTTTCATTTTGCAGAAAGCTGAGCAAGATAAGTTGGAGAAGC
TTGCCCGCAAGGTATGTCTTAAATTATACCCTCTTAGTCTTTATGATTTA
TGTGCAATATTTGATGAACTTCTTGGGAGTATTTAATTATTGGATCAATC
ATTTTCCTGTGTATATTTTCTGAATGTGGATGCTTATTGATTTTATTTGG
TAGAAAATAGATGAATTAGACGGGAGTGACTTTTTTACACATTTCAAGGC
TATTACACCTACCCCCAAAAAAGAAATACTAGAGCCAATCAACATATATG
CCCGATCTGTATTTTGTTTTACTTTTAAATTCAAATGCTAAGCTGTTATG
TGTATAAAGCTGTGGAAACTTGTAATTGAGTGTACAACACATCTTATAAG
AAAGAAAAGTTGTAACCCCTTTATTTGGAAATTTCAGTGTCTGTTGTAGG
TTCAACATAATTTGTTGCATCTTCATGAAGATTATTCTGTATACACAGAT
TATGATAACCTTGGTTGCTCGTTAAACATCCATAAAGATATACTTTGAAC
ATTATTTATACCCCTTTTCATTTTCAGCTAACTTTTGGGTTAGATACCTT
TTTTTAAGTTATATTAAAAACCCATTGCATATTTTATCCTGCACATATGG
CTCTATCTTAAAGATCAAATAACTACAATGTTGATATTACTTTATATCCT
GTCAGTTTTCTGTGTTTGTGACTGTTTCTGTAACGTTTTCAAGAATTTTT
TCTCCAGTTGCTTATGCATTTGTTTGTCTATCCGAAGTCTTACTTTGAAG
TCAATGGTAACTCTATCCTCTAATTTAGGGTCCTCAACCAGAAGCAAGCT
CAGGGGGTTCAGTAATTGATGCCAAACCAAGTGGCTCAGGACACACTGGA
GCATCAGCTGAAAGAGTTTCAACTGACAAGCACCGGAACTATGCAGTTGT
AGCTGGCACCATAACAATTCTTGGGGCTCTGGGGTGGTACCTTAAGGGCA
CTGCAAAGAAGCCAGAAGTGCAGGATTGAACATTTCAGATGTTCATGTTC
TCATTTTGGTATTGTTTGCAGCAAGTAGCACAAAATAAATGACCACACTA
CTAACTATGATTATTTTATTATATCGCATTGTTATAACGAATTACTACTT
TAATTTTTTATGTTTTACATCATGCTACTGAGCATGACGAGCATCAAATT
TTCTCCAATAA

Coding sequence (CDS) from alignment at chr02:9287179..9289739-

>rna-XM_014637349.2_VrVC1973A-SNU_v1 ID=rna-XM_014637349.2_VrVC1973A-SNU_v1; Name=rna-XM_014637349.2; organism=Vigna radiata; type=CDS; length=348bp; location=Sequence derived from: chr02:9287179..9289739- (Vigna radiata
ATGGCTGCGCGTGTGGCTGCACGGTACGGATCTAGAAGGTTGTTTAGCAG
TGGTTCTGGAAAAATACTCAGCGAGGAGGAGAAGGCTGCAGAAAATGCTT
ACTTTAAGAAAGCTGAGCAAGATAAGTTGGAGAAGCTTGCCCGCAAGGGT
CCTCAACCAGAAGCAAGCTCAGGGGGTTCAGTAATTGATGCCAAACCAAG
TGGCTCAGGACACACTGGAGCATCAGCTGAAAGAGTTTCAACTGACAAGC
ACCGGAACTATGCAGTTGTAGCTGGCACCATAACAATTCTTGGGGCTCTG
GGGTGGTACCTTAAGGGCACTGCAAAGAAGCCAGAAGTGCAGGATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR045284	At2g27730-like

Search form

rna-XM_014637349.2