rna-XM_014638171.2

Transcript Overview
Namerna-XM_014638171.2
Unique Namerna-XM_014638171.2_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length270
Productuncharacterized LOC106755937
References
External references for this mRNA
DatabaseAccession
GeneID106755937
GenbankXM_014638171.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr02chromosomechr02:22359348..22360356 +Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asvrvL034Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0221Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0311Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0351Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvrvL400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0689Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivrvL483Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavrvL398Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL512Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL0014Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0222Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0429Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL456Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvrvL801Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvrvL019Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL378Pisum sativum Cameor genome v1aPisum sativum
psvrvL385Pisum sativum Cameor genome v1aPisum sativum
pvvrvL215Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL646Pisum sativum Cameor genome v1aPisum sativum
tifvrvL219Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvrvR119Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvssR260Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR279Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuR193Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR175Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR204Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuR212Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR231Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvrvL373Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvrvL484Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL195Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL341Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvrvL369Cicer arietinum
carvrvL482Cicer arietinum
ccavrvL026Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL711Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vrvvumR195Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR218Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR236Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR237Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR253Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR185Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR193Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR206Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL039Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL346Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvrvL015Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL202Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vrvvunR187Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR205Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1001736Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-KK1_002805Cajanus cajan Asha genome v1.0Cajanus cajan
Psat07G0200100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.04G287400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg30379.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_13043.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_20490Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004502272.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_32995Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_16787Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058925609.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun01g244600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_11317Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_13735.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
XM_058927440.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg53589.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_11010Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058875848.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_04G03200.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan03g313300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat05G0283200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_004504424.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_21890.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun01g244600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.04G425900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va03G084980.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr01.2302Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_00114.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.001G258900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106755937gene-LOC106755937_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014638171.2-1exon-XM_014638171.2-1_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014638171.2-2exon-XM_014638171.2-2_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014638171.2-3exon-XM_014638171.2-3_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014493657.1cds-XP_014493657.1_VrVC1973A-SNU_v1Vigna radiataCDS
cds-XP_014493657.1cds-XP_014493657.1_VrVC1973A-SNU_v1_2Vigna radiataCDS
cds-XP_014493657.1cds-XP_014493657.1_VrVC1973A-SNU_v1_3Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014638171.2_VrVC1973A-SNU_v1rna-XM_014638171.2_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014638171.2_VrVC1973A-SNU_v1rna-XM_014638171.2_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G48140.1 (| B12D protein | Chr3:17778471-17779299 FORWARD LENGTH=88 | 201606)

HSP 1 Score: 130.183 bits (326), Expect = 4.706e-41
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 0
Query:    3 ANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPS 88
            A+RWL+PEVYPLFAA GVAVGIC   L+RNIT NPEVR TK NRAAG+L+N  EGEKY ++ LRK+VR + P+IMP +N FF++P+
Sbjct:    2 ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFTDPT 87          
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.1 (| B12D protein | Chr3:11745299-11746481 FORWARD LENGTH=87 | 201606)

HSP 1 Score: 107.071 bits (266), Expect = 7.120e-32
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0
Query:    5 RWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            RW++PEVYPL  A+G    +   QL RN   NP+ R+ K +R  G+LEN +EGEKY+QH  RKY+R R PQ+MPS+N FFS+  N
Sbjct:    3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 87          
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.3 (| B12D protein | Chr3:11746016-11746481 FORWARD LENGTH=72 | 201606)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-23
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0
Query:   18 VGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            +G    +   QL RN   NP+ R+ K +R  G+LEN +EGEKY+QH  RKY+R R PQ+MPS+N FFS+  N
Sbjct:    1 MGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 72          
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.2 (| B12D protein | Chr3:11746016-11746481 FORWARD LENGTH=72 | 201606)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-23
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0
Query:   18 VGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            +G    +   QL RN   NP+ R+ K +R  G+LEN +EGEKY+QH  RKY+R R PQ+MPS+N FFS+  N
Sbjct:    1 MGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 72          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TIS1|A0A1S3TIS1_VIGRR (uncharacterized protein LOC106755937 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755937 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.854e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NJK5|A0A4D6NJK5_VIGUN (NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g114 PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.054e-58
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVL+NFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLDNFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSDPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S166|A0A0S3S166_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G425900 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.493e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWL+PEVYPLFAAVG AVGICGMQLVRNITTNPEVRVTKSNRAAG+LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLRPEVYPLFAAVGAAVGICGMQLVRNITTNPEVRVTKSNRAAGILENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UAL3|A0A0L9UAL3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g313300 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.493e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWL+PEVYPLFAAVG AVGICGMQLVRNITTNPEVRVTKSNRAAG+LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLRPEVYPLFAAVGAAVGICGMQLVRNITTNPEVRVTKSNRAAGILENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|V7D215|V7D215_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G258900g PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.008e-56
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENFEEGEKYS+H LRKYVRG+ PQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFEEGEKYSEHSLRKYVRGKNPQIMPSVNNFFSEPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|I1MYJ0|I1MYJ0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500344 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.622e-55
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QRU1|A0A0B2QRU1_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_047161 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.622e-55
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|C6T1F7|C6T1F7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.392e-55
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQ+MPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQVMPSVNNFFSDPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|I1LNB8|I1LNB8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100527541 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.436e-54
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTK NR AG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKQNRTAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89          
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445HI47|A0A445HI47_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_037137 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.550e-54
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0
Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTK NR AG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKRNRTAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89          
The following BLAST results are available for this feature:
BLAST of rna-XM_014638171.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_014638171.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G48140.14.706e-4166.28| B12D protein | Chr3:17778471-17779299 FORWARD LE... [more]
AT3G29970.17.120e-3252.94| B12D protein | Chr3:11745299-11746481 FORWARD LE... [more]
AT3G29970.31.625e-2350.00| B12D protein | Chr3:11746016-11746481 FORWARD LE... [more]
AT3G29970.21.625e-2350.00| B12D protein | Chr3:11746016-11746481 FORWARD LE... [more]
back to top
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3TIS1|A0A1S3TIS1_VIGRR2.854e-59100.00uncharacterized protein LOC106755937 OS=Vigna radi... [more]
tr|A0A4D6NJK5|A0A4D6NJK5_VIGUN1.054e-5897.75NADH-ubiquinone reductase complex 1 MLRQ subunit O... [more]
tr|A0A0S3S166|A0A0S3S166_PHAAN4.493e-5896.63Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9UAL3|A0A0L9UAL3_PHAAN4.493e-5896.63Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|V7D215|V7D215_PHAVU8.008e-5693.26Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|I1MYJ0|I1MYJ0_SOYBN2.622e-5592.13Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A0B2QRU1|A0A0B2QRU1_GLYSO2.622e-5592.13Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|C6T1F7|C6T1F7_SOYBN4.392e-5591.01Uncharacterized protein OS=Glycine max OX=3847 PE=... [more]
tr|I1LNB8|I1LNB8_SOYBN2.436e-5489.89Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A445HI47|A0A445HI47_GLYSO5.550e-5489.89Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitPFAMPF06522B12Dcoord: 8..75
e-value: 6.4E-26
score: 89.9
NoneNo IPR availablePANTHERPTHR33417G-BOX BINDING PROTEINcoord: 2..88

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=mRNA; length=270bp
ATGGCCGCCAACAGATGGTTGAAACCTGAGGTATACCCACTCTTCGCTGC
AGTTGGTGTAGCTGTCGGGATCTGCGGTATGCAACTTGTGAGGAACATAA
CCACCAATCCTGAAGTCAGGGTGACCAAGAGCAACAGAGCTGCAGGAGTT
CTCGAGAACTTTGAGGAGGGAGAGAAATATTCACAACATGGTCTGAGGAA
GTATGTTCGTGGGAGGACCCCTCAGATCATGCCATCCGTCAACAACTTCT
TCTCTGAACCATCAAACTAA
back to top

protein sequence of rna-XM_014638171.2_VrVC1973A-SNU_v1

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=89bp
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGV
LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
back to top

mRNA from alignment at chr02:22359348..22360356+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=mRNA; length=1009bp; location=Sequence derived from: chr02:22359348..22360356+ (Vigna radiata
AACCAAGAAAGTAGAAACCCAACCATTCATTCACTtacaattcaagaaaa acaaGCAATCGTTGACCAAATTCTTTGAATTTGGTAGCCAAATTTGTAGG GTTTTTGCATGAACCATAAAATGGGCATGATTTTCGCATCACATTCACAC ATATAAACCAGTTACCACATTCATCATTCCTCATTCAGTTTTGCTCCGCA TCCTTCTTGTTAAGTTTCCTTGGAAGCGGAGCCTGTTTCTTGTTTTCTGT TTCTCCTTCgttcaattttctcttttctgcaGCTTCTCTTCTCAACATGG CCGCCAACAGATGGTTGAAACCTGAGGTACTTTTATGTTTCTTGTATATT CATGAATTGCATCTCATAAAGTTGGTTAAACTGGTGCACTTTTTGAACAT TGAATTGGTTCTTGTTACGTGCGAATAGGTATACCCACTCTTCGCTGCAG TTGGTGTAGCTGTCGGGATCTGCGGTATGCAACTTGTGAGGAACATAACC ACCAATCCTGAAGTCAGGTATGGTTTcatgtttttgtttgattatggttt catttttcattgttCAGATTCAATGTTTGTTCTGTCATAAGTATTTGTTC TGGTGTGTGTTGTTGAATTTGGTTATGGTTTGATGATTTCAGGGTGACCA AGAGCAACAGAGCTGCAGGAGTTCTCGAGAACTTTGAGGAGGGAGAGAAA TATTCACAACATGGTCTGAGGAAGTATGTTCGTGGGAGGACCCCTCAGAT CATGCCATCCGTCAACAACTTCTTCTCTGAACCATCAAACTAAATCAGAT GCCAAATTTTCTGTTTCATTTTCGATATTCCTTTCAGTTATATCAAATTT TGGCTTTTTGGATATTGGGAATCGAGAAGTAGGAGACAACATTAATCaga tctttcatttttcttccaacATGTACTATGATCGTGTAATTTGTTGATGG ATGACATTCAATTTAacctaattataataaaattatatactttacACATT ATCAAGTTA
back to top

Coding sequence (CDS) from alignment at chr02:22359348..22360356+

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=CDS; length=270bp; location=Sequence derived from: chr02:22359348..22360356+ (Vigna radiata
ATGGCCGCCAACAGATGGTTGAAACCTGAGGTATACCCACTCTTCGCTGC
AGTTGGTGTAGCTGTCGGGATCTGCGGTATGCAACTTGTGAGGAACATAA
CCACCAATCCTGAAGTCAGGGTGACCAAGAGCAACAGAGCTGCAGGAGTT
CTCGAGAACTTTGAGGAGGGAGAGAAATATTCACAACATGGTCTGAGGAA
GTATGTTCGTGGGAGGACCCCTCAGATCATGCCATCCGTCAACAACTTCT
TCTCTGAACCATCAAACTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D