rna-XM_014638176.2
|
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014638176.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LFT5|EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.278e-25 Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 0 Query: 34 VSCFVQPHHAIPPEDP--SSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHN---RVHP---AGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
VS F+QP PP P + E+K RLGS PP+CHN+CN CHPCMA+QVP+LP+ + RV+P + P S++ L Q YSNYKPM WKC C HF+NP
Sbjct: 24 VSSFLQPIQ--PPISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ---YSNYKPMGWKCHCNGHFYNP 122
BLAST of rna-XM_014638176.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9T068|EPFL2_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.224e-10 Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 0 Query: 58 LGSMPPTCHN-KCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLL---QGNSYSNYKPMSWKCRCGDHFFNP 129
+GS PP C +C C C A+QVP+ P P S SS+ + L +G+ +NYKPMSWKC+CG+ +NP
Sbjct: 53 IGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128
BLAST of rna-XM_014638176.2 vs. Araport11
Match: AT5G10310.1 (| EPIDERMAL PATTERNING FACTOR-like protein | Chr5:3241666-3242127 REVERSE LENGTH=122 | 201606) HSP 1 Score: 96.2857 bits (238), Expect = 1.307e-26 Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 0 Query: 34 VSCFVQPHHAIPPEDP--SSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHN---RVHP---AGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
VS F+QP PP P + E+K RLGS PP+CHN+CN CHPCMA+QVP+LP+ + RV+P + P S++ L Q YSNYKPM WKC C HF+NP
Sbjct: 24 VSSFLQPIQ--PPISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ---YSNYKPMGWKCHCNGHFYNP 122
BLAST of rna-XM_014638176.2 vs. Araport11
Match: AT5G10310.2 (| EPIDERMAL PATTERNING FACTOR-like protein | Chr5:3241666-3242127 REVERSE LENGTH=128 | 201606) HSP 1 Score: 95.9005 bits (237), Expect = 2.572e-26 Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = 0 Query: 34 VSCFVQPHHAIPPEDPSSY--------EEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHN---RVHP---AGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
VS F+QP PP P + E+K RLGS PP+CHN+CN CHPCMA+QVP+LP+ + RV+P + P S++ L Q YSNYKPM WKC C HF+NP
Sbjct: 24 VSSFLQPIQ--PPISPQFFALFQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ---YSNYKPMGWKCHCNGHFYNP 128
BLAST of rna-XM_014638176.2 vs. Araport11
Match: AT4G37810.1 (| EPIDERMAL PATTERNING FACTOR-like protein | Chr4:17780970-17781544 FORWARD LENGTH=128 | 201606) HSP 1 Score: 58.151 bits (139), Expect = 1.252e-11 Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 0 Query: 58 LGSMPPTCHN-KCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLL---QGNSYSNYKPMSWKCRCGDHFFNP 129
+GS PP C +C C C A+QVP+ P P S SS+ + L +G+ +NYKPMSWKC+CG+ +NP
Sbjct: 53 IGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TIS5|A0A1S3TIS5_VIGRR (Epidermal patterning factor-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106755944 PE=3 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 5.477e-90 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP
Sbjct: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UAV6|A0A0L9UAV6_PHAAN (Epidermal patterning factor-like protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g307400 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.578e-79 Identity = 117/129 (90.70%), Postives = 121/129 (93.80%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
MIMAS NPIQNSTT IL VAI ITFLLHHLLCPVSCF+ PHHAIPP+DPS YEEKNRLGSMPP+CHNKCNQCHPCMAVQVPSLP+HNRVHPAGISPSS MQGFLLQGNSYSNYKPMSWKC CGDHFFNP
Sbjct: 1 MIMASFNPIQNSTTTILPVAIIITFLLHHLLCPVSCFMLPHHAIPPKDPS-YEEKNRLGSMPPSCHNKCNQCHPCMAVQVPSLPTHNRVHPAGISPSSQMQGFLLQGNSYSNYKPMSWKCSCGDHFFNP 128
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445FMP9|A0A445FMP9_GLYSO (Epidermal patterning factor-like protein OS=Glycine soja OX=3848 GN=D0Y65_047220 PE=3 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 9.064e-67 Identity = 102/129 (79.07%), Postives = 111/129 (86.05%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
MIMAS N IQNSTT ILL+ I ITFLLHHLLCPVSCF QP HAIPP DP EEKNRLGSMPPTCHNKCN+CHPCMAVQVP+ PSH RVHP G++P++AM+ F LQGN YSNYKP+SWKC CGDHFFNP
Sbjct: 1 MIMASFNSIQNSTTPILLITILITFLLHHLLCPVSCFNQPQHAIPPPDPLC-EEKNRLGSMPPTCHNKCNRCHPCMAVQVPASPSHERVHP-GLAPTAAMEVFFLQGNRYSNYKPLSWKCHCGDHFFNP 127
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|I1MYQ7|I1MYQ7_SOYBN (Epidermal patterning factor-like protein OS=Glycine max OX=3847 GN=102664041 PE=3 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 9.064e-67 Identity = 102/129 (79.07%), Postives = 111/129 (86.05%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
MIMAS N IQNSTT ILL+ I ITFLLHHLLCPVSCF QP HAIPP DP EEKNRLGSMPPTCHNKCN+CHPCMAVQVP+ PSH RVHP G++P++AM+ F LQGN YSNYKP+SWKC CGDHFFNP
Sbjct: 1 MIMASFNSIQNSTTPILLITILITFLLHHLLCPVSCFNQPQHAIPPPDPLC-EEKNRLGSMPPTCHNKCNRCHPCMAVQVPASPSHERVHP-GLAPTAAMEVFFLQGNRYSNYKPLSWKCHCGDHFFNP 127
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MCV2|A0A4D6MCV2_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3365 PE=4 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.113e-66 Identity = 110/130 (84.62%), Postives = 113/130 (86.92%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVA-IFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
MIMASLNPIQN TT ILLVA I ITFLL LCPVSCF+QP DPS YEEKNRLGSMPPTCHNKCNQCHPCMAVQVPS+PSHNRVHP ISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHF+NP
Sbjct: 418 MIMASLNPIQNPTTTILLVATIIITFLLQ--LCPVSCFMQPQM-----DPS-YEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSIPSHNRVHPVAISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFYNP 539
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|V7D2D2|V7D2D2_PHAVU (Epidermal patterning factor-like protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G253100g PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 8.228e-61 Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
MIM+SLN IQNSTT ILL+ I ITFLLHHLLCPVSCF+ P HAIPP DPS YEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSL +NRVHP ISPS+AMQ F LQGN YSNYKP+SWKC CGD FFNP
Sbjct: 1 MIMSSLNLIQNSTTTILLITIIITFLLHHLLCPVSCFIPPQHAIPPRDPS-YEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLSRNNRVHPVSISPSAAMQSFFLQGNRYSNYKPLSWKCHCGDQFFNP 128
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371FR97|A0A371FR97_MUCPR (Epidermal patterning factor-like protein (Fragment) OS=Mucuna pruriens OX=157652 GN=EPFL1 PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 3.728e-55 Identity = 99/129 (76.74%), Postives = 110/129 (85.27%), Query Frame = 0 Query: 3 MASLNPIQNSTTIILLVAIFIT-FLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQ-GNSYSNYKPMSWKCRCGDHFFNP 129
MASLN IQNSTT ILL+ + I FL HHLLCPVSCF QP HA PP DP EEKNRLGS+PPTCHNKCNQCHPCMAVQVP+LPSH+R+HP G++P+SAM+GF LQ NSYSNYKP+SWKC CGDHFFNP
Sbjct: 1 MASLNSIQNSTTTILLIIVIIITFLQHHLLCPVSCFNQPQHATPPPDPLC-EEKNRLGSIPPTCHNKCNQCHPCMAVQVPTLPSHDRLHP-GLAPTSAMEGFFLQSNNSYSNYKPLSWKCHCGDHFFNP 127
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445HI16|A0A445HI16_GLYSO (Epidermal patterning factor-like protein OS=Glycine soja OX=3848 GN=D0Y65_037078 PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.782e-54 Identity = 100/131 (76.34%), Postives = 111/131 (84.73%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNS--YSNYKPMSWKCRCGDHFFNP 129
MIMASLN IQNSTT ILL+ I ITFLLHHLLCPVSCF QP HAIPP DP EE+NRLGSMPPTCHNKCNQCHPCMAVQVP+ P+H RVHP + P+++M+ F LQGN+ YSNYKP+SWKC CGDHFFNP
Sbjct: 1 MIMASLNSIQNSTTTILLLIILITFLLHHLLCPVSCFNQPQHAIPPPDPLC-EEQNRLGSMPPTCHNKCNQCHPCMAVQVPTSPNHERVHPGLLPPTASMEVFFLQGNTNRYSNYKPLSWKCHCGDHFFNP 130
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|I3SW38|I3SW38_LOTJA (Epidermal patterning factor-like protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 7.187e-54 Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0 Query: 3 MASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNS-YSNYKPMSWKCRCGDHFFNP 129
MASLN QNST I+ + + + FLLHHLLCPVSC QP AIPP D +EKNRLGSMPPTCHNKCNQCHPCMAVQVP+LPSH+RV G+ ++M+G LQ N+ YSNYKP+SWKC CG HFFNP
Sbjct: 1 MASLNSYQNSTNTIITILLVMVFLLHHLLCPVSCINQPQPAIPPRD-QFLDEKNRLGSMPPTCHNKCNQCHPCMAVQVPNLPSHDRVVGPGVPRIASMEGLFLQANNRYSNYKPLSWKCHCGGHFFNP 127
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151U931|A0A151U931_CAJCA (Epidermal patterning factor-like protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019984 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.914e-53 Identity = 89/129 (68.99%), Postives = 98/129 (75.97%), Query Frame = 0 Query: 1 MIMASLNPIQNSTTIILLVAIFITFLLHHLLCPVSCFVQPHHAIPPEDPSSYEEKNRLGSMPPTCHNKCNQCHPCMAVQVPSLPSHNRVHPAGISPSSAMQGFLLQGNSYSNYKPMSWKCRCGDHFFNP 129
IMASLN IQNSTT+ +L+ I ITFLLHH+LCPVSCF QP HA P +KNR+GS PPTCHNKCNQCHPCMAVQVPS+ SHNRV P A + F LQGN YSNYKP+SWKC CGDHFFNP
Sbjct: 1 FIMASLNSIQNSTTLTILLIIVITFLLHHVLCPVSCFNQPQHAPEPL----CAKKNRIGSSPPTCHNKCNQCHPCMAVQVPSVRSHNRVQPC-----RAPKKFSLQGNRYSNYKPLSWKCHCGDHFFNP 120 The following BLAST results are available for this feature:
BLAST of rna-XM_014638176.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of rna-XM_014638176.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 3 Position : 0 Zoom : x 1
BLAST of rna-XM_014638176.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014638176.2_VrVC1973A-SNU_v1 ID=rna-XM_014638176.2_VrVC1973A-SNU_v1; Name=rna-XM_014638176.2; organism=Vigna radiata; type=mRNA; length=390bpback to top protein sequence of rna-XM_014638176.2_VrVC1973A-SNU_v1 >rna-XM_014638176.2_VrVC1973A-SNU_v1 ID=rna-XM_014638176.2_VrVC1973A-SNU_v1; Name=rna-XM_014638176.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=129bpback to top mRNA from alignment at chr02:22763663..22765257+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014638176.2_VrVC1973A-SNU_v1 ID=rna-XM_014638176.2_VrVC1973A-SNU_v1; Name=rna-XM_014638176.2; organism=Vigna radiata; type=mRNA; length=1595bp; location=Sequence derived from: chr02:22763663..22765257+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr02:22763663..22765257+ >rna-XM_014638176.2_VrVC1973A-SNU_v1 ID=rna-XM_014638176.2_VrVC1973A-SNU_v1; Name=rna-XM_014638176.2; organism=Vigna radiata; type=CDS; length=390bp; location=Sequence derived from: chr02:22763663..22765257+ (Vigna radiataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|