rna-XM_014638253.2

Transcript Overview
Namerna-XM_014638253.2
Unique Namerna-XM_014638253.2_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length414
Product50S ribosomal protein L23-like
References
External references for this mRNA
DatabaseAccession
GeneID106756018
GenbankXM_014638253.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr02chromosomechr02:22841714..22842394 -Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asvrvL031Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0021Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0219Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0311Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0351Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvrvL400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0692Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivrvL482Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivrvL640Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavrvL398Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL516Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL0014Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0956Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL456Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvrvL574Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvrvL019Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL378Pisum sativum Cameor genome v1aPisum sativum
pvvrvL218Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL652Pisum sativum Cameor genome v1aPisum sativum
tifvrvL219Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvrvL639Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvrvR117Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvL230Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssR260Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR278Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvrvL651Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuR193Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR175Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR204Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR193Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR214Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvzwsR236Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvrvL373Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvrvL487Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL194Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL341Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvrvL369Cicer arietinum
carvrvL489Cicer arietinum
ccavrvL026Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL710Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vrvvumR193Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR218Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR237Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR260Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR184Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR206Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL038Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL346Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvrvL015Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL205Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vrvvunR187Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR207Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cr_13104.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg53709.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan01g026800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat5g090160.1Pisum sativum Cameor genome v1aPisum sativum
Vum_04G03138.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_22392.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va03G083850.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_13766.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_012716401.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_09566Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat05G0271100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigan.04G418700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_00194.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
XM_058930991.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr03.350Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.2g095960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_16763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_019994Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun01g236900.3Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigst.01G067900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr02.1453Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.01G086900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cr_14971.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun01g236900.14Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.2g117280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr01.2239Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_028993Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.002G256100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_22329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_01G00742.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_12701Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106756018gene-LOC106756018_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014638253.2-1exon-XM_014638253.2-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014493739.1cds-XP_014493739.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014638253.2_VrVC1973A-SNU_v1rna-XM_014638253.2_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014638253.2_VrVC1973A-SNU_v1rna-XM_014638253.2_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_014638253.2 vs. Araport11
Match: AT4G39880.1 (| Ribosomal protein L23/L15e family protein | Chr4:18504601-18505137 FORWARD LENGTH=178 | 201606)

HSP 1 Score: 150.214 bits (378), Expect = 6.314e-47
Identity = 80/117 (68.38%), Postives = 94/117 (80.34%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGER 115
            MP   TNI E A+KTIPSASKIEIKRVLESLYGF VEKV+TLN++GKKKKR  LLIAK DYKKAYVTL++PLSIS DL+P++ IEED+K   K   SS V+EE   +SHWLD + +R
Sbjct:   21 MPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRK--SKVKGSSFVEEEDDKKSHWLDRKEKR 135
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TIY5|A0A1S3TIY5_VIGRR (uncharacterized protein LOC106756018 OS=Vigna radiata var. radiata OX=3916 GN=LOC106756018 PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 2.946e-95
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEEARSHWLDDEGERASPCTPPLPLYTSTFCKYEIVK 137
            MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEEARSHWLDDEGERASPCTPPLPLYTSTFCKYEIVK
Sbjct:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEEARSHWLDDEGERASPCTPPLPLYTSTFCKYEIVK 137
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MFT8|A0A4D6MFT8_VIGUN (Large subunit ribosomal protein L23 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3376 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.570e-66
Identity = 104/120 (86.67%), Postives = 109/120 (90.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEEA--RSHWLDDEGERASP 118
            MPNSFTNIREIA+KTIPSASKIEIKRVLESLYGFQVEKV TLN+EGKKKKR  LLIAKPDYKKAYVTLKNPLSISPDLYPIRI+EEDKKRV+KQT SSVVQ+EA  RSHWLDD  E   P
Sbjct:   21 MPNSFTNIREIALKTIPSASKIEIKRVLESLYGFQVEKVQTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSISPDLYPIRIVEEDKKRVNKQTMSSVVQQEAHTRSHWLDDRKEAQQP 140
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RHN8|A0A0S3RHN8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G298100 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.014e-63
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASPCTPPLPL 125
            MP +FTNI+EIA+KTIPSASKIEIKRVLESLYGF+VEKV TLN+EGKKKKR  LLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRV+KQT SSVV+EE  ARSHWLDD  E   P     P 
Sbjct:   21 MPKTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVQTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVNKQTTSSVVKEETHARSHWLDDRKEAQQPFRAQRPF 147
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UBR1|A0A0L9UBR1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g016500 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.014e-63
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASPCTPPLPL 125
            MP +FTNI+EIA+KTIPSASKIEIKRVLESLYGF+VEKV TLN+EGKKKKR  LLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRV+KQT SSVV+EE  ARSHWLDD  E   P     P 
Sbjct:   21 MPKTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVQTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVNKQTTSSVVKEETHARSHWLDDRKEAQQPFRAQRPF 147
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RKB4|A0A0S3RKB4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G070200 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.021e-61
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASPCTPPLPL 125
            MP +FTNI+EIA+KTIPSASKIEIKRVLESLYGF+VEKV TLN+EGKKKKR  LLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRV+KQT SSVV+E+  ARSHWLDD  E   P     P 
Sbjct:   21 MPKTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVQTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVNKQTTSSVVEEDTHARSHWLDDRKESQQPFRAQRPF 147
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F5I2|A0A3Q0F5I2_VIGRR (uncharacterized protein LOC106764124 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764124 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.890e-61
Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASPCTPPLPL 125
            MP +FTNI+EIA+KTIPSASKIEIKRVLESLYGF+VEKVHTLN+EGKK+K   LLIAKPDYKKAYVTLKNPLS+SPDLYPIRIIEEDK+RV+KQT SSVV+EE  ARSHWLDD  E   P     P 
Sbjct:   21 MPKTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVHTLNMEGKKRKWGGLLIAKPDYKKAYVTLKNPLSLSPDLYPIRIIEEDKRRVNKQTTSSVVEEETHARSHWLDDRKETQQPFRAQRPF 147
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F116|A0A3Q0F116_VIGRR (uncharacterized protein LOC106764124 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764124 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.094e-61
Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASPCTPPLPL 125
            MP +FTNI+EIA+KTIPSASKIEIKRVLESLYGF+VEKVHTLN+EGKK+K   LLIAKPDYKKAYVTLKNPLS+SPDLYPIRIIEEDK+RV+KQT SSVV+EE  ARSHWLDD  E   P     P 
Sbjct:   21 MPKTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVHTLNMEGKKRKWGGLLIAKPDYKKAYVTLKNPLSLSPDLYPIRIIEEDKRRVNKQTTSSVVEEETHARSHWLDDRKETQQPFRAQRPF 147
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F2G0|A0A3Q0F2G0_VIGRR (uncharacterized protein LOC106764124 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764124 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.956e-61
Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASPCTPPLPL 125
            MP +FTNI+EIA+KTIPSASKIEIKRVLESLYGF+VEKVHTLN+EGKK+K   LLIAKPDYKKAYVTLKNPLS+SPDLYPIRIIEEDK+RV+KQT SSVV+EE  ARSHWLDD  E   P     P 
Sbjct:   21 MPKTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVHTLNMEGKKRKWGGLLIAKPDYKKAYVTLKNPLSLSPDLYPIRIIEEDKRRVNKQTTSSVVEEETHARSHWLDDRKETQQPFRAQRPF 147
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|V7AF52|V7AF52_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G075200g PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.436e-60
Identity = 98/120 (81.67%), Postives = 107/120 (89.17%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASP 118
            MP +FTNI EIA+KTIPSASKIEIKRVLESLYGF+VEKV TLN+EGKKKKR  +LIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKR++KQTKSSVV+EE  A +HWLDD  E   P
Sbjct:   21 MPKTFTNIHEIALKTIPSASKIEIKRVLESLYGFEVEKVQTLNMEGKKKKRGGVLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRLNKQTKSSVVEEETHASTHWLDDRKEAQQP 140
[Close]
BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Match: tr|V7BA15|V7BA15_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G217800g PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.467e-60
Identity = 98/120 (81.67%), Postives = 107/120 (89.17%), Query Frame = 0 
Query:    1 MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKKRDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVVQEE--ARSHWLDDEGERASP 118
            MP +FTNI EIA+KTIPSASKIEIKRVLESLYGF+VEKV TLN+EGKKKKR  +LIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKR++KQTKSSVV+EE  A +HWLDD  E   P
Sbjct:   21 MPKTFTNIHEIALKTIPSASKIEIKRVLESLYGFEVEKVQTLNMEGKKKKRGGVLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRLNKQTKSSVVEEETHASTHWLDDRKEAQQP 140
The following BLAST results are available for this feature:
BLAST of rna-XM_014638253.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_014638253.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G39880.16.314e-4768.38| Ribosomal protein L23/L15e family protein | Chr4... [more]
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BLAST of rna-XM_014638253.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3TIY5|A0A1S3TIY5_VIGRR2.946e-95100.00uncharacterized protein LOC106756018 OS=Vigna radi... [more]
tr|A0A4D6MFT8|A0A4D6MFT8_VIGUN7.570e-6686.67Large subunit ribosomal protein L23 OS=Vigna ungui... [more]
tr|A0A0S3RHN8|A0A0S3RHN8_PHAAN9.014e-6380.31Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9UBR1|A0A0L9UBR1_PHAAN9.014e-6380.31Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A0S3RKB4|A0A0S3RKB4_PHAAN1.021e-6179.53Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A3Q0F5I2|A0A3Q0F5I2_VIGRR1.890e-6177.95uncharacterized protein LOC106764124 isoform X2 OS... [more]
tr|A0A3Q0F116|A0A3Q0F116_VIGRR2.094e-6177.95uncharacterized protein LOC106764124 isoform X3 OS... [more]
tr|A0A3Q0F2G0|A0A3Q0F2G0_VIGRR5.956e-6177.95uncharacterized protein LOC106764124 isoform X1 OS... [more]
tr|V7AF52|V7AF52_PHAVU1.436e-6081.67Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|V7BA15|V7BA15_PHAVU1.467e-6081.67Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 10..70
e-value: 6.7E-15
score: 55.2
IPR013025Ribosomal protein L25/L23PANTHERPTHR12059RIBOSOMAL PROTEIN L23-RELATEDcoord: 3..103
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..112
e-value: 2.2E-19
score: 72.1
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 11..74

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014638253.2_VrVC1973A-SNU_v1 ID=rna-XM_014638253.2_VrVC1973A-SNU_v1; Name=rna-XM_014638253.2; organism=Vigna radiata; type=mRNA; length=414bp
ATGCCGAACAGCTTCACCAACATTCGTGAAATCGCGATCAAGACCATTCC
TTCGGCCTCCAAGATCGAGATCAAGCGCGTTCTCGAATCCCTCTACGGCT
TCCAGGTCGAGAAGGTTCACACCCTGAACATAGAGGGCAAGAAGAAGAAA
CGGGACTGGTTGTTGATCGCAAAACCCGATTACAAAAAGGCCTACGTCAC
CCTCAAGAACCCGCTCTCCATTTCGCCGGATCTCTACCCGATTCGAATCA
TCGAGGAGGATAAAAAGAGGGTCCACAAGCAAACTAAGTCCAGCGTCGTT
CAGGAAGAGGCTAGAAGTCACTGGCTCGATGACGAGGGAGAGAGGGCTTC
TCCCTGCACTCCACCACTTCCTCTCTACACCTCCACATTCTGTAAATATG
AGATAGTTAAATGA
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protein sequence of rna-XM_014638253.2_VrVC1973A-SNU_v1

>rna-XM_014638253.2_VrVC1973A-SNU_v1 ID=rna-XM_014638253.2_VrVC1973A-SNU_v1; Name=rna-XM_014638253.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=137bp
MPNSFTNIREIAIKTIPSASKIEIKRVLESLYGFQVEKVHTLNIEGKKKK
RDWLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKKRVHKQTKSSVV
QEEARSHWLDDEGERASPCTPPLPLYTSTFCKYEIVK
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mRNA from alignment at chr02:22841714..22842394-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014638253.2_VrVC1973A-SNU_v1 ID=rna-XM_014638253.2_VrVC1973A-SNU_v1; Name=rna-XM_014638253.2; organism=Vigna radiata; type=mRNA; length=681bp; location=Sequence derived from: chr02:22841714..22842394- (Vigna radiata
GACTAATGAACTAGTTATAAAAGAAATAAATGGAAAAAATGGGAGGAAAA
AATGGAGGTGAGAAAGGAAAATAGGTTTGGGCCCAATAAGGAAATGAATA
TGTAGCTTAGTATTAGATTTGAAGGCAAAGAAGGAGAGGGGAAAGCTTTG
CGAAGGTTGTGTCGTGAGAAATTGAGAGCGAGCATGGGAAGTAGAATGGG
AAAAAGGGTGGTGCAGTTGGCAAACCTACCGATATAGCTTTTGATGCCGA
ACAGCTTCACCAACATTCGTGAAATCGCGATCAAGACCATTCCTTCGGCC
TCCAAGATCGAGATCAAGCGCGTTCTCGAATCCCTCTACGGCTTCCAGGT
CGAGAAGGTTCACACCCTGAACATAGAGGGCAAGAAGAAGAAACGGGACT
GGTTGTTGATCGCAAAACCCGATTACAAAAAGGCCTACGTCACCCTCAAG
AACCCGCTCTCCATTTCGCCGGATCTCTACCCGATTCGAATCATCGAGGA
GGATAAAAAGAGGGTCCACAAGCAAACTAAGTCCAGCGTCGTTCAGGAAG
AGGCTAGAAGTCACTGGCTCGATGACGAGGGAGAGAGGGCTTCTCCCTGC
ACTCCACCACTTCCTCTCTACACCTCCACATTCTGTAAATATGAGATAGT
TAAATGATATTTATTGCGCAGTCAATTTTTA
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Coding sequence (CDS) from alignment at chr02:22841714..22842394-

>rna-XM_014638253.2_VrVC1973A-SNU_v1 ID=rna-XM_014638253.2_VrVC1973A-SNU_v1; Name=rna-XM_014638253.2; organism=Vigna radiata; type=CDS; length=414bp; location=Sequence derived from: chr02:22841714..22842394- (Vigna radiata
ATGCCGAACAGCTTCACCAACATTCGTGAAATCGCGATCAAGACCATTCC
TTCGGCCTCCAAGATCGAGATCAAGCGCGTTCTCGAATCCCTCTACGGCT
TCCAGGTCGAGAAGGTTCACACCCTGAACATAGAGGGCAAGAAGAAGAAA
CGGGACTGGTTGTTGATCGCAAAACCCGATTACAAAAAGGCCTACGTCAC
CCTCAAGAACCCGCTCTCCATTTCGCCGGATCTCTACCCGATTCGAATCA
TCGAGGAGGATAAAAAGAGGGTCCACAAGCAAACTAAGTCCAGCGTCGTT
CAGGAAGAGGCTAGAAGTCACTGGCTCGATGACGAGGGAGAGAGGGCTTC
TCCCTGCACTCCACCACTTCCTCTCTACACCTCCACATTCTGTAAATATG
AGATAGTTAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013025Ribosomal_uL23-like
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_uL23/eL15/eS24_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome