rna-XM_014639863.2

Transcript Overview
Namerna-XM_014639863.2
Unique Namerna-XM_014639863.2_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length345
Productsmall nuclear ribonucleoprotein SmD1a
References
External references for this mRNA
DatabaseAccession
GeneID106757238
GenbankXM_014639863.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr03chromosomechr03:995410..998669 +Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asvrvL155Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvrvL322Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0641Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL1078Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL1141Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivrvL229Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivrvL337Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavrvL034Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL194Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL293Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL0273Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0442Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL040Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccvrvL0592Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL224Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvrvL322Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvrvL181Pisum sativum Cameor genome v1aPisum sativum
psvrvL182Pisum sativum Cameor genome v1aPisum sativum
pvvrvL023Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL500Pisum sativum Cameor genome v1aPisum sativum
pvvrvL499Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvrvL542Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vrvvrvL028Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvrvR142Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvssR302Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR324Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR343Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvzwsR247Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR219Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR239Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvzwsR260Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuR251Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR244Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR284Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuR263Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvrvL177Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvrvL264Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL097Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL271Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL345Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvrvL179Cicer arietinum
carvrvL266Cicer arietinum
ccavrvL217Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL305Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL645Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vrvvumR268Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR285Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR290Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR279Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR304Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR316Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR256Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR262Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR267Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL350Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL437Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL564Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvrvL019Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL461Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vrvvunR228Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR249Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.04G297300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_004493599.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
XM_058882043.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-TanjilR_11475Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_07525.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
PvulFLAVERTChr01.977Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Psat06G0170000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_09066.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_07367Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va03G068550.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004495160.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_05997.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Cc_v2.0_03612.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_24610Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_001787Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.001G149700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
XM_058926148.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-KK1_035360Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.04G187100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun01g132100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat6g060600.1Pisum sativum Cameor genome v1aPisum sativum
Psat3g065000.1Pisum sativum Cameor genome v1aPisum sativum
Ca_07838Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_04G02116.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_09565.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr01.1290Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat03G0223100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun01g132100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
jg32721.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106757238gene-LOC106757238_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014639863.2-1exon-XM_014639863.2-1_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014639863.2-2exon-XM_014639863.2-2_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014639863.2-3exon-XM_014639863.2-3_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014639863.2-4exon-XM_014639863.2-4_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014495349.1cds-XP_014495349.1_VrVC1973A-SNU_v1Vigna radiataCDS
cds-XP_014495349.1cds-XP_014495349.1_VrVC1973A-SNU_v1_2Vigna radiataCDS
cds-XP_014495349.1cds-XP_014495349.1_VrVC1973A-SNU_v1_3Vigna radiataCDS
cds-XP_014495349.1cds-XP_014495349.1_VrVC1973A-SNU_v1_4Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014639863.2_VrVC1973A-SNU_v1rna-XM_014639863.2_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014639863.2_VrVC1973A-SNU_v1rna-XM_014639863.2_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SY09|SMD1B_ARATH (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.286e-60
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGK 96
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLK VKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE+ PRIKPKKPTAGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SSF1|SMD1A_ARATH (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.660e-59
Identity = 88/98 (89.80%), Postives = 95/98 (96.94%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPL 98
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRYYILPDSLNLETLLVE+ PR+KPKKP AGK +
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAV 98
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|O42661|SMD1_SCHPO (Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=smd1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.997e-42
Identity = 66/91 (72.53%), Postives = 80/91 (87.91%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKK 91
            MKLVRFLMKL NETVSIELKNGT+VHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9VU02|SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster OX=7227 GN=SmD1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.286e-42
Identity = 64/91 (70.33%), Postives = 83/91 (91.21%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKK 91
            MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY+ILPDSL LETLL+++ P+ K KK
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKK 91
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|P62315|SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus OX=10090 GN=Snrpd1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.059e-41
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGR 104
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P++K KK  A    GRGRGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGR 104
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q4R5F6|SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.059e-41
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGR 104
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P++K KK  A    GRGRGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGR 104
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|P62314|SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.059e-41
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGR 104
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P++K KK  A    GRGRGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGR 104
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q3ZC10|SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.059e-41
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGR 104
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P++K KK  A    GRGRGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGR 104
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q10013|SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans OX=6239 GN=snr-3 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.743e-37
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIK 88
            MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD L L+TLL+++ PR K
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKK 88
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q02260|SMD1_YEAST (Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SMD1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.477e-19
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VTLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
            MKLV FL KL NE V+IELKNGT V GT+  V   MN  L  VKLTL                      G+ P       +L ++++RGN IR  ILPDSLNL++LLV++
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT4G02840.1 (| Small nuclear ribonucleoprotein family protein | Chr4:1264726-1266253 FORWARD LENGTH=116 | 201606)

HSP 1 Score: 184.111 bits (466), Expect = 1.316e-61
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGK 96
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLK VKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE+ PRIKPKKPTAGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT3G07590.2 (| Small nuclear ribonucleoprotein family protein | Chr3:2423146-2423958 FORWARD LENGTH=114 | 201606)

HSP 1 Score: 181.415 bits (459), Expect = 1.699e-60
Identity = 88/98 (89.80%), Postives = 95/98 (96.94%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPL 98
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRYYILPDSLNLETLLVE+ PR+KPKKP AGK +
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAV 98
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT3G07590.1 (| Small nuclear ribonucleoprotein family protein | Chr3:2423146-2423958 FORWARD LENGTH=114 | 201606)

HSP 1 Score: 181.415 bits (459), Expect = 1.699e-60
Identity = 88/98 (89.80%), Postives = 95/98 (96.94%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPL 98
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRYYILPDSLNLETLLVE+ PR+KPKKP AGK +
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAV 98
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT4G02840.2 (| Small nuclear ribonucleoprotein family protein | Chr4:1264726-1266253 FORWARD LENGTH=126 | 201606)

HSP 1 Score: 176.022 bits (445), Expect = 2.720e-58
Identity = 91/106 (85.85%), Postives = 94/106 (88.68%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGK 96
            MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLK VKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE+ PRIKPKKPTAGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 106
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT3G07590.3 (| Small nuclear ribonucleoprotein family protein | Chr3:2423590-2423958 FORWARD LENGTH=88 | 201606)

HSP 1 Score: 125.176 bits (313), Expect = 1.415e-38
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0 
Query:   30 TGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGK 96
             GVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRYYILPDSLNLETLLVE+ PR+KPKKP AGK
Sbjct:    4 AGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGK 70
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT1G20580.1 (| Small nuclear ribonucleoprotein family protein | Chr1:7128979-7130371 FORWARD LENGTH=131 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 1.558e-12
Identity = 32/105 (30.48%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:    4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGR 108
            V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      L+H+ +RG+ +R+ ++PD L    +      RIK K  + G  +GRGRG  RG+
Sbjct:    9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLG--VGRGRGAMRGK 111
[Close]
BLAST of rna-XM_014639863.2 vs. Araport11
Match: AT1G76300.1 (| snRNP core protein SMD3 | Chr1:28625957-28627080 FORWARD LENGTH=128 | 201606)

HSP 1 Score: 53.1434 bits (126), Expect = 6.698e-10
Identity = 30/110 (27.27%), Postives = 57/110 (51.82%), Query Frame = 0 
Query:    4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRG 113
            V+ L + +   VS+E+K+G +  G++   + + N  L+ +  T K      L+H+ +RG+ +R+ ++PD       +++ AP  K  +       G+G+    G GRGRG
Sbjct:    9 VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSLVRFLVIPD-------MLKNAPMFKDVR-------GKGKSASLGVGRGRG 104
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6M8D0|A0A4D6M8D0_VIGUN (Small nuclear ribonucleoprotein Sm D1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2360 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.197e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|V7CYD7|V7CYD7_PHAVU (Small nuclear ribonucleoprotein Sm D1 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G149700g PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.197e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RY22|A0A0S3RY22_PHAAN (Small nuclear ribonucleoprotein Sm D1 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G297300 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.197e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TNL3|A0A1S3TNL3_VIGRR (Small nuclear ribonucleoprotein Sm D1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757238 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.197e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445LD90|A0A445LD90_GLYSO (Small nuclear ribonucleoprotein Sm D1 (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_007239 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.226e-73
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAP+IKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:   37 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPKIKPKKPTAGKPLGRGRGRGRGRGRGRGR 150
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A5D2BMZ4|A0A5D2BMZ4_GOSDA (Small nuclear ribonucleoprotein Sm D1 OS=Gossypium darwinii OX=34276 GN=ES288_D08G234400v1 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.849e-73
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PR+KPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:   57 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 170
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2I4GU34|A0A2I4GU34_JUGRE (Small nuclear ribonucleoprotein Sm D1 OS=Juglans regia OX=51240 GN=LOC109010907 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.005e-73
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPR+KPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XVK4|A0A1S2XVK4_CICAR (Small nuclear ribonucleoprotein Sm D1 OS=Cicer arietinum OX=3827 GN=LOC101509392 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.215e-73
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPR+KPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|G7IEE2|G7IEE2_MEDTR (Small nuclear ribonucleoprotein Sm D1 OS=Medicago truncatula OX=3880 GN=11420807 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.215e-73
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPR+KPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
[Close]
BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PAA7|A0A2K3PAA7_TRIPR (Small nuclear ribonucleoprotein Sm D1 OS=Trifolium pratense OX=57577 GN=L195_g008841 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.215e-73
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPR+KPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
The following BLAST results are available for this feature:
BLAST of rna-XM_014639863.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9SY09|SMD1B_ARATH1.286e-6094.79Small nuclear ribonucleoprotein SmD1b OS=Arabidops... [more]
sp|Q9SSF1|SMD1A_ARATH1.660e-5989.80Small nuclear ribonucleoprotein SmD1a OS=Arabidops... [more]
sp|O42661|SMD1_SCHPO4.997e-4272.53Small nuclear ribonucleoprotein Sm D1 OS=Schizosac... [more]
sp|Q9VU02|SMD1_DROME7.286e-4270.33Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
sp|P62315|SMD1_MOUSE1.059e-4172.12Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu... [more]
sp|Q4R5F6|SMD1_MACFA1.059e-4172.12Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa... [more]
sp|P62314|SMD1_HUMAN1.059e-4172.12Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi... [more]
sp|Q3ZC10|SMD1_BOVIN1.059e-4172.12Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru... [more]
sp|Q10013|SMD1_CAEEL5.743e-3769.32Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
sp|Q02260|SMD1_YEAST2.477e-1944.55Small nuclear ribonucleoprotein Sm D1 OS=Saccharom... [more]
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BLAST of rna-XM_014639863.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 7
Match NameE-valueIdentityDescription
AT4G02840.11.316e-6194.79| Small nuclear ribonucleoprotein family protein |... [more]
AT3G07590.21.699e-6089.80| Small nuclear ribonucleoprotein family protein |... [more]
AT3G07590.11.699e-6089.80| Small nuclear ribonucleoprotein family protein |... [more]
AT4G02840.22.720e-5885.85| Small nuclear ribonucleoprotein family protein |... [more]
AT3G07590.31.415e-3886.57| Small nuclear ribonucleoprotein family protein |... [more]
AT1G20580.11.558e-1230.48| Small nuclear ribonucleoprotein family protein |... [more]
AT1G76300.16.698e-1027.27| snRNP core protein SMD3 | Chr1:28625957-28627080... [more]
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BLAST of rna-XM_014639863.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6M8D0|A0A4D6M8D0_VIGUN1.197e-73100.00Small nuclear ribonucleoprotein Sm D1 OS=Vigna ung... [more]
tr|V7CYD7|V7CYD7_PHAVU1.197e-73100.00Small nuclear ribonucleoprotein Sm D1 OS=Phaseolus... [more]
tr|A0A0S3RY22|A0A0S3RY22_PHAAN1.197e-73100.00Small nuclear ribonucleoprotein Sm D1 OS=Vigna ang... [more]
tr|A0A1S3TNL3|A0A1S3TNL3_VIGRR1.197e-73100.00Small nuclear ribonucleoprotein Sm D1 OS=Vigna rad... [more]
tr|A0A445LD90|A0A445LD90_GLYSO1.226e-7399.12Small nuclear ribonucleoprotein Sm D1 (Fragment) O... [more]
tr|A0A5D2BMZ4|A0A5D2BMZ4_GOSDA1.849e-7398.25Small nuclear ribonucleoprotein Sm D1 OS=Gossypium... [more]
tr|A0A2I4GU34|A0A2I4GU34_JUGRE2.005e-7399.12Small nuclear ribonucleoprotein Sm D1 OS=Juglans r... [more]
tr|A0A1S2XVK4|A0A1S2XVK4_CICAR3.215e-7398.25Small nuclear ribonucleoprotein Sm D1 OS=Cicer ari... [more]
tr|G7IEE2|G7IEE2_MEDTR3.215e-7398.25Small nuclear ribonucleoprotein Sm D1 OS=Medicago ... [more]
tr|A0A2K3PAA7|A0A2K3PAA7_TRIPR3.215e-7398.25Small nuclear ribonucleoprotein Sm D1 OS=Trifolium... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163Sm domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..69
e-value: 1.4E-18
score: 66.4
NoneNo IPR availableGENE3D2.30.30.100coord: 50..82
e-value: 1.2E-11
score: 46.6
coord: 1..49
e-value: 4.2E-19
score: 70.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..114
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 4..113
IPR047575Sm domainPROSITEPS52002SMcoord: 2..74
score: 26.714828
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 2.17141E-57
score: 170.483
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..113

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014639863.2_VrVC1973A-SNU_v1 ID=rna-XM_014639863.2_VrVC1973A-SNU_v1; Name=rna-XM_014639863.2; organism=Vigna radiata; type=mRNA; length=345bp
ATGAAGCTCGTCAGGTTTCTAATGAAGCTGAACAACGAAACCGTTTCGAT
TGAGCTTAAGAATGGCACTGTCGTTCACGGCACCATTACAGGTGTTGATA
TCAGTATGAATACACATTTAAAAACAGTTAAACTAACTCTGAAAGGGAAA
AACCCAGTTACTTTGGATCATCTGAGTGTGAGAGGCAACAACATTCGTTA
TTATATCCTTCCTGATAGCTTGAATCTTGAGACATTACTGGTTGAAGAGG
CTCCTAGGATCAAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGGGGCGA
GGTCGAGGACGAGGGCGTGGACGTGGACGTGGTCGTGGCCGTTAA
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protein sequence of rna-XM_014639863.2_VrVC1973A-SNU_v1

>rna-XM_014639863.2_VrVC1973A-SNU_v1 ID=rna-XM_014639863.2_VrVC1973A-SNU_v1; Name=rna-XM_014639863.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=114bp
MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGK
NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGKPLGR
GRGRGRGRGRGRGR
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mRNA from alignment at chr03:995410..998669+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014639863.2_VrVC1973A-SNU_v1 ID=rna-XM_014639863.2_VrVC1973A-SNU_v1; Name=rna-XM_014639863.2; organism=Vigna radiata; type=mRNA; length=3260bp; location=Sequence derived from: chr03:995410..998669+ (Vigna radiata
GGCAATGCAGTAGTTATAAAAGCTGTTTGCATCGTCCacttctttgtttt
ttagaatCTATATCTAAAAGAAACACAGCGCAGCTACGCGCGACTATTGT
GTTTCAAAACCCTCACTCACTCATCGTCTTTCTCTTCTACCATGAAGCTC
GTCAGGTGTTACCTCTTCGTTGTCGTTttcacttctctctctctctctct
cttcgtTTCAATTTGATGCTAAAAGGCGTGTAAAACTGGAACAGGTTTCT
AATGAAGCTGAACAACGAAACCGTTTCGATTGAGCTTAAGAATGGCACTG
TCGTTCACGGCACCATTACAGGTACTCTTCCGCTCTTTTCGATTGGTTTT
CCTCTCCACCGCCTGATTTTGCTGCTTCCTTTGTTAAACCCTAGTTTTGC
TTCGCTCTTAAACCTGTATATTAAGATTTAGCGTAAAAGCTTTCGGTCTT
GGATATTTGTCGCGAATGGAATTCTGCAGGGATGCTCGCTTGTTTTCTCA
ATTCATAAACCTAATGTAGATTTCCATTTCACTCTTTAATCGTTGtcttg
aattttcattttttttttttgtattttgggaATTAGTTCTGAGTAGCCTT
TAGATGACGAGATTTGACATGTCTAAACCTTGTGCTCAAAGAACTTCATT
GATGCCACTCTGttattgtagaaaaaaaaagtgaagcaGAGGCAGTTCTC
TGTATGTAAATAAATTGCGCTTTCTTTTGAGATGTTAGATATCATGTGTG
CATTCCACGTAAGTGTCTCTAATTATGGTTGCGATGCTACAATTTAACAC
CCACCCACCCTAGCTCTCTCTCTTTTGTATATAGAAGACCACATGTCCAT
ATAATATATCAACCTAAACTGCAGAGATTCTTATTAGTTATACTTAGGTT
GATCAGTTTGAATAAAATCTGTTGGATGCTATGTTTTATCATAACGGACA
ATCAATCATGCCAggccaaaaaaataaaaccataatCATTTAGTACTTTC
AAATCATTACTGGAAATGCTAAACTAAGATCCATTTCTTCACTTatgttc
aacattttttttttcagtctgagttagattttataattggtatatgactt
ttttttacTTGTGATTCCTTTGTTAACATTTTCATGTCTTGTCAGAGTGA
ATGGCTATTTTTCTGAGTCAATAAGATGGGAACTCTGTCATCAGCCTGAT
AGGTTGCAACTTACTGCATAGCTAATATGATCTGGaatttttaagtttga
aatCTCTGTTCTCCTTGCTCCCAAACTTACTGTAGGGCAGACCATTTTTT
GGTTGTATGCTGTGGCTTTTTCTGCATTCTTGATTTCTCTTCATGTTATA
CTTTGTTCTTTTTACTGTTACACCTTGTTATGAATTAAAacttttgttgt
ctttttctgTAGTGTAATGTCCTCTAAGAAGCTCAAACACTTATAGATGG
TAACCGTGTcatgtaatatttttctatgttgGGTAAATGCAGACACTTTC
AAAactattagttttatttttataatttttctacttttaaagttttttgt
atactaatattgtttgaaataatacattaaGTGGATAAGTTTTAACATCA
TACTCCATCTATAATAACCCATTCtcattttttaaacataaattcccttc
ttcaatttaaaatcaatattaaatttcaagTAGTTTTTCTGTTGTATTAT
ATCCATGTTGTGtcctataatttttaaaattgggtGAATCTGTGTCCGTA
TTACACCTCTATTATATTTCTGTCCTGTATTATATCCATGATTTCCATAT
TGTCTTCTTAGTTTTACTGACACTCTTTTCTcctttataaatttcattaa
agtGTCTGATGTAAAAGAagtaattaattacttttttatgtttaaactcT
TAACTTGGAACAGTGGGAAGATATGTATTGCTTATGAGATTTTTGTAAGA
AGCATCGTGAACTATGGACTCTGGATACCTCACTTTTGAGGCAAAtctat
ttaaactttatttattccATAACAGTAATTATTAACCTTGTAGCCTCTGG
AGTAAGTTTGCATAATGCTATAATTTAGATTAGCTATATTGTATCTGCAT
TTTACTTTTGTGCTTTACTCTTTTTTGATGGTATGATACGCAACTCTTTT
ATTGCCTTACCTACAACGAATTTGGCTGACAAATACCATTCTCTTcgttc
tttcattttaatttagacCCCCTGCTGTTTGTTCTgtgaaattttctttt
gaacaaGCTTCTCGTGGATTTAGTTTGGCTTAGTCACACGCACACGCATA
GAAAACTATATAAATTATATCACATTTTTTGTCTTTAGGTTCAACGCAAT
AAGTCAAGACTACCTTTTACACCTGTTTTTATGATGAAACGAGATCAGGC
ATTTTTCATAAGGATAGTGAATCCTTATATTATAATAGGGCAATGCATTA
CTACATATTCCCAAACTCAATCAAATTAAGCATCAAGGAATTTCCTTCTC
TTTACTTGTAACTAATGAGTACCTATCAGCTCATTTCTAATTTTGAGTTT
ACCCTTTTGGTGCCCTTCATTCTTATTTGGGATTGCATGAGAAGTATTTT
GTAGCTTTAGTTGTGCTTACCCATGGGTTTGTCAATATGTTACAGGTGTT
GATATCAGTATGAATACACATTTAAAAACAGTTAAACTAACTCTGAAAGG
GAAAAACCCAGTTACTTTGGATCATCTGAGTGTGAGAGGCAACAACATTC
GTTATTATATCCTTCCTGATAGCTTGAATCTTGAGACATTACTGGTTGAA
GAGGCTCCTAGGATCAAGCCTAAGAAGCCAACTGCTGGTACTGTATCTTA
TTTGACTGACTCTAGAAGTAGATTGTTTTTTTCAGAGGCCCATTATGTTC
AGGTTGACTGTTATCTTTGGATTTCTGGTTTTCAATGTTCTGATTTTATA
TGCAGGGAAGCCTTTGGGGCGAGGTCGAGGACGAGGGCGTGGACGTGGAC
GTGGTCGTGGCCGTTAAATTGCAAATTAACAGAATTTGTGGCCTTTGGTT
GTACCTTTATTGTAGGAAATTTTTCTAATGAGTTTAAAGACGTTGTAGAA
GTGATGTTGACCAGTTAAGTTAGTCATGCGGACTTTGTTCATGTTCCCAT
TTTCTTGCATCAATGCTTTGAAGTTCCCTTGTATAATTCTCCCTGTTGGA
TCATTGTCATATTTCAACTGATAATTTGCTGCTTACATATGTGTAGTTTT
ATGTGGGCAA
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Coding sequence (CDS) from alignment at chr03:995410..998669+

>rna-XM_014639863.2_VrVC1973A-SNU_v1 ID=rna-XM_014639863.2_VrVC1973A-SNU_v1; Name=rna-XM_014639863.2; organism=Vigna radiata; type=CDS; length=345bp; location=Sequence derived from: chr03:995410..998669+ (Vigna radiata
ATGAAGCTCGTCAGGTTTCTAATGAAGCTGAACAACGAAACCGTTTCGAT
TGAGCTTAAGAATGGCACTGTCGTTCACGGCACCATTACAGGTGTTGATA
TCAGTATGAATACACATTTAAAAACAGTTAAACTAACTCTGAAAGGGAAA
AACCCAGTTACTTTGGATCATCTGAGTGTGAGAGGCAACAACATTCGTTA
TTATATCCTTCCTGATAGCTTGAATCTTGAGACATTACTGGTTGAAGAGG
CTCCTAGGATCAAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGGGGCGA
GGTCGAGGACGAGGGCGTGGACGTGGACGTGGTCGTGGCCGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001163Sm_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR047575Sm
IPR034102Sm_D1
IPR010920LSM_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0000387spliceosomal snRNP assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding