rna-XM_014640106.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TPD8|A0A1S3TPD8_VIGRR (uncharacterized protein LOC106757436 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757436 PE=4 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 2.439e-111 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNILKRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSSENEVTVSPPRSGNQVRWNPVLDTIFE 161 MGNAISSSSSCISNGVSIRNILKRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSSENEVTVSPPRSGNQVRWNPVLDTIFE Sbjct: 1 MGNAISSSSSCISNGVSIRNILKRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSSENEVTVSPPRSGNQVRWNPVLDTIFE 161
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S087|A0A0S3S087_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G389500 PE=4 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 3.514e-100 Identity = 153/167 (91.62%), Postives = 157/167 (94.01%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNILKRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSS----ENEVTVSP--PRSGNQVRWNPVLDTIFE 161 MGNA +SSSCISNGVSI NILKR+KPTKTA+LLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRS+ ENEVTVSP PR GNQVRWNPVLDTIFE Sbjct: 1 MGNA--TSSSCISNGVSIGNILKRKKPTKTAVLLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSTERDAENEVTVSPACPRLGNQVRWNPVLDTIFE 165
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U9Z7|A0A0L9U9Z7_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g279400 PE=4 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 3.514e-100 Identity = 153/167 (91.62%), Postives = 157/167 (94.01%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNILKRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSS----ENEVTVSP--PRSGNQVRWNPVLDTIFE 161 MGNA +SSSCISNGVSI NILKR+KPTKTA+LLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRS+ ENEVTVSP PR GNQVRWNPVLDTIFE Sbjct: 1 MGNA--TSSSCISNGVSIGNILKRKKPTKTAVLLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSTERDAENEVTVSPACPRLGNQVRWNPVLDTIFE 165
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|V7D0K8|V7D0K8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G212300g PE=4 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.083e-83 Identity = 136/168 (80.95%), Postives = 142/168 (84.52%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNIL-KRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRS----SENEVTVSP--PRSGNQVRWNPVLDTIFE 161 MGN SSCISN S+ +IL KRRKPTKTAILLES GNTRE+KLPVKSGE+MIEEFGHV+TPLDELRRTGRVSALL +EELVAGKVYLLLPVSRVHSKASKFEM IAE QSS KKRTRG N AKVSPSLISRS ENEVTV P PR GNQVRWNPVLDTI E Sbjct: 1 MGNV---PSSCISNVASVGDILRKRRKPTKTAILLESDGNTREMKLPVKSGEIMIEEFGHVITPLDELRRTGRVSALLADEELVAGKVYLLLPVSRVHSKASKFEMDIAETQSSQKKRTRGMNTAKVSPSLISRSIERDVENEVTVFPVCPRLGNQVRWNPVLDTILE 165
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MA61|A0A4D6MA61_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2998 PE=4 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 7.693e-83 Identity = 138/168 (82.14%), Postives = 144/168 (85.71%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNILKRR-KPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAK----VSPSLISRSSENEVTVSP--PRSGNQVRWNPVLDTIFE 161 MGNA +SSSCISNGVSI ILK+R KPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEE+LV GKVYLLLPVSRVHSKASKFEMAIAEAQS KRTRG NMAK + S R +ENEVTV P PR GNQ+RWNPVLDTIFE Sbjct: 1 MGNA--TSSSCISNGVSIGKILKKRTKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEDLVPGKVYLLLPVSRVHSKASKFEMAIAEAQS---KRTRGINMAKVSPSLVSSSSERDAENEVTVFPVCPRLGNQLRWNPVLDTIFE 163
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QC86|A0A0B2QC86_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007873 PE=4 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.279e-72 Identity = 125/171 (73.10%), Postives = 139/171 (81.29%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGV-SIRNILKRRKPTKTA-ILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSS----ENEVTVS----PPRSGNQVRWNPVLDTIFE 161 MGN S S CISNGV SI NILK+R+ K +LL+S GNTREIKLP+KSGELMIEEFGHVVTP+DE+RRTGRVSALL +EELVAGKVYLLLPV+R++SKAS+FEMAIAE QS H K RG NMAKVSPSLISRS+ EN+VTVS PR GNQVRWNPVLD I E Sbjct: 1 MGNTTSCSCICISNGVISIGNILKKRRKAKKTAMLLDSDGNTREIKLPIKSGELMIEEFGHVVTPVDEIRRTGRVSALLADEELVAGKVYLLLPVNRINSKASEFEMAIAEKQSGHTKSKRGNNMAKVSPSLISRSNERDEENQVTVSVFPVCPRFGNQVRWNPVLDPIVE 171
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|C6TGE7|C6TGE7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 7.582e-71 Identity = 124/171 (72.51%), Postives = 138/171 (80.70%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGV-SIRNILKRRKPTKTA-ILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSS----ENEVTVS----PPRSGNQVRWNPVLDTIFE 161 MGN S S CISNGV SI NILK+R+ K +LL+S GNTREIKLP+KSGELMIEEFGHVVTP+DE+RRTGRVSALL +EELVAGKVYLLLPV+R++SKAS+FEMAIAE QS H K RG MAKVSPSLISRS+ EN+VTVS PR GNQVRWNPVLD I E Sbjct: 1 MGNTTSCSCICISNGVISIGNILKKRRKAKKTAMLLDSDGNTREIKLPIKSGELMIEEFGHVVTPVDEIRRTGRVSALLADEELVAGKVYLLLPVNRINSKASEFEMAIAEKQSGHTKSKRGNIMAKVSPSLISRSNERDEENQVTVSVFPVCPRFGNQVRWNPVLDPIVE 171
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|I1NBB7|I1NBB7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100810032 PE=4 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 1.374e-68 Identity = 111/161 (68.94%), Postives = 124/161 (77.02%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNILKRRKPTKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSSENEVTVSPPRSGNQVRWNPVLDTIFE 161 MGNA S S CI NG ++ I RK TKTA+LL+S N REIKLP SGELMI+EFGHV+TP+DELRRTGRVSALL +EELVAGKVYLLLPV+RV+SKAS+FEMA+AE QS H KRTRG NMAKVSPS+ PR GNQVRWNPVLD IFE Sbjct: 1 MGNANSCSCICIPNGAILKKI---RKGTKTAMLLDSDENPREIKLPATSGELMIQEFGHVITPVDELRRTGRVSALLADEELVAGKVYLLLPVNRVNSKASEFEMALAEKQSGHTKRTRGNNMAKVSPSVC------------PRFGNQVRWNPVLDPIFE 146
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371GD41|A0A371GD41_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_29922 PE=4 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.814e-66 Identity = 115/171 (67.25%), Postives = 129/171 (75.44%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGVSIRNILKRRKP--TKTAILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAKVSPSLISRSSENEVTVSP--------PRSGNQVRWNPVLDTIFE 161 MGN ++S SCI NGVSI NI+ +R TKTA+LL++GGNTREIKLP KSGE+MIEEFGHV+TP+DE+RRTGR+SALL +EELVAGKVYLLLPVSRVHSKAS FE AIAE Q RTRG N AKVSPSLISR + V R GNQ RWNPVLD IFE Sbjct: 1 MGN--TASCSCICNGVSIGNIMNKRGKGTTKTAMLLDTGGNTREIKLPAKSGEVMIEEFGHVITPVDEVRRTGRISALLADEELVAGKVYLLLPVSRVHSKASDFERAIAETQ-----RTRGHNTAKVSPSLISRPRQRVVQNVVTVTVFPGHQRLGNQPRWNPVLDPIFE 164
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0KMG0|A0A0R0KMG0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G218900 PE=4 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 1.592e-53 Identity = 95/127 (74.80%), Postives = 107/127 (84.25%), Query Frame = 0 Query: 1 MGNAISSSSSCISNGV-SIRNILKRRKPTKTA-ILLESGGNTREIKLPVKSGELMIEEFGHVVTPLDELRRTGRVSALLPEEELVAGKVYLLLPVSRVHSKASKFEMAIAEAQSSHKKRTRGTNMAK 125 MGN S S CISNGV SI NILK+R+ K +LL+S GNTREIKLP+KSGELMIEEFGHVVTP+DE+RRTGRVSALL +EELVAGKVYLLLPV+R++SKAS+FEMAIAE QS H K RG NMAK Sbjct: 1 MGNTTSCSCICISNGVISIGNILKKRRKAKKTAMLLDSDGNTREIKLPIKSGELMIEEFGHVVTPVDEIRRTGRVSALLADEELVAGKVYLLLPVNRINSKASEFEMAIAEKQSGHTKSKRGNNMAK 127 The following BLAST results are available for this feature:
BLAST of rna-XM_014640106.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_014640106.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 0
BLAST of rna-XM_014640106.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014640106.2_VrVC1973A-SNU_v1 ID=rna-XM_014640106.2_VrVC1973A-SNU_v1; Name=rna-XM_014640106.2; organism=Vigna radiata; type=mRNA; length=486bpback to top protein sequence of rna-XM_014640106.2_VrVC1973A-SNU_v1 >rna-XM_014640106.2_VrVC1973A-SNU_v1 ID=rna-XM_014640106.2_VrVC1973A-SNU_v1; Name=rna-XM_014640106.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=161bpback to top mRNA from alignment at chr03:7886923..7888194- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014640106.2_VrVC1973A-SNU_v1 ID=rna-XM_014640106.2_VrVC1973A-SNU_v1; Name=rna-XM_014640106.2; organism=Vigna radiata; type=mRNA; length=1272bp; location=Sequence derived from: chr03:7886923..7888194- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr03:7886923..7888194- >rna-XM_014640106.2_VrVC1973A-SNU_v1 ID=rna-XM_014640106.2_VrVC1973A-SNU_v1; Name=rna-XM_014640106.2; organism=Vigna radiata; type=CDS; length=486bp; location=Sequence derived from: chr03:7886923..7888194- (Vigna radiataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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