rna-XM_014645265.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014645265.2 vs. UniProtKB/Swiss-Prot
Match: sp|P59082|LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa OX=4679 GN=LFS PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.517e-15 Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 0 Query: 8 RWKGKAVVELADTNGEVAWSVIEDFCNIHKWM-SLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVL-SREEGGCKIEWGFVCDPMEG 132 +W GK L +T E AW++++DF N+HK M SL C EG G +RY I+ +E+ W KEKL+A+D SY E G++ Y AT++++ E G + +W F C +EG Sbjct: 20 KWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKG-IMHPIEEE---FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEG 142
BLAST of rna-XM_014645265.2 vs. Araport11
Match: AT4G32870.1 (| Polyketide cyclase/dehydrase and lipid transport superfamily protein | Chr4:15862168-15862641 FORWARD LENGTH=157 | 201606) HSP 1 Score: 147.902 bits (372), Expect = 6.358e-46 Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 0 Query: 8 RWKGKAVVELADTNGEVAWSVIEDFCNIHKWM-SLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKV--LSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQL 155 +W+GK V ++ E WSV DFCN+ +W S+DTCY+ +G+ G PGLIRYC++T K +W KEKL+ IDP+ RCLSYE++ENN+GF+ YVAT++V + E+ +IEW FV DP++GW E LESYV+ LQ + ++L Sbjct: 9 KWEGKKVAQVNGVTAEKVWSVFSDFCNVQEWFPSVDTCYRVQGTDGVPGLIRYCSTTKT----KEEGSRWAKEKLVKIDPIGRCLSYEILENNVGFRSYVATVQVTPVDGEDQVSRIEWSFVADPVDGWKKEDLESYVDFCLQHMANKMEL 155
BLAST of rna-XM_014645265.2 vs. Araport11
Match: AT2G25770.2 (| Polyketide cyclase/dehydrase and lipid transport superfamily protein | Chr2:10992987-10993490 FORWARD LENGTH=167 | 201606) HSP 1 Score: 132.494 bits (332), Expect = 9.343e-40 Identity = 63/151 (41.72%), Postives = 93/151 (61.59%), Query Frame = 0 Query: 5 SDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWM-SLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQ 154 S E+W K V L + W + DF N+HKW+ +L TC+ G+ G+ G IR+C+ + +W KEKL+A++PVER + YE++E+N GF+ YV+T+K+L R E GC IEW F DP+ G S+E L E +L+II KN++ Sbjct: 6 SPEKWLAKVSVTLTKAKPDEIWPLFTDFFNLHKWLPTLATCHGVHGNNGEQGCIRFCSGFSIGSNGVDSAARWSKEKLVAVNPVERVMRYEIVESNTGFESYVSTVKILPRGEDGCVIEWSFTVDPVRGLSLENLVKKYEKALEIITKNME 156
BLAST of rna-XM_014645265.2 vs. Araport11
Match: AT2G25770.1 (| Polyketide cyclase/dehydrase and lipid transport superfamily protein | Chr2:10992987-10993490 FORWARD LENGTH=167 | 201606) HSP 1 Score: 132.494 bits (332), Expect = 9.343e-40 Identity = 63/151 (41.72%), Postives = 93/151 (61.59%), Query Frame = 0 Query: 5 SDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWM-SLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQ 154 S E+W K V L + W + DF N+HKW+ +L TC+ G+ G+ G IR+C+ + +W KEKL+A++PVER + YE++E+N GF+ YV+T+K+L R E GC IEW F DP+ G S+E L E +L+II KN++ Sbjct: 6 SPEKWLAKVSVTLTKAKPDEIWPLFTDFFNLHKWLPTLATCHGVHGNNGEQGCIRFCSGFSIGSNGVDSAARWSKEKLVAVNPVERVMRYEIVESNTGFESYVSTVKILPRGEDGCVIEWSFTVDPVRGLSLENLVKKYEKALEIITKNME 156
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U422|A0A1S3U422_VIGRR (lachrymatory-factor synthase OS=Vigna radiata var. radiata OX=3916 GN=LOC106761695 PE=3 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 6.030e-114 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNTP 160 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNTP Sbjct: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNTP 160
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RCD1|A0A0S3RCD1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G102600 PE=3 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 5.190e-107 Identity = 150/160 (93.75%), Postives = 156/160 (97.50%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNTP 160 MGEKSDERWKGKAVVELADTN EVAWSVIEDFCNIHKWMSLDT YQQEG+LGKPGLIRYCASTIVD+V+KTPTLKW KEK+LAIDPVER LSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDP+EGW+VEGLESYVESSLQIIKKNIQLAYNTP Sbjct: 1 MGEKSDERWKGKAVVELADTNTEVAWSVIEDFCNIHKWMSLDTSYQQEGTLGKPGLIRYCASTIVDEVKKTPTLKWAKEKVLAIDPVERSLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPVEGWTVEGLESYVESSLQIIKKNIQLAYNTP 160
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UGJ5|A0A0L9UGJ5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g207100 PE=3 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 5.190e-107 Identity = 150/160 (93.75%), Postives = 156/160 (97.50%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNTP 160 MGEKSDERWKGKAVVELADTN EVAWSVIEDFCNIHKWMSLDT YQQEG+LGKPGLIRYCASTIVD+V+KTPTLKW KEK+LAIDPVER LSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDP+EGW+VEGLESYVESSLQIIKKNIQLAYNTP Sbjct: 1 MGEKSDERWKGKAVVELADTNTEVAWSVIEDFCNIHKWMSLDTSYQQEGTLGKPGLIRYCASTIVDEVKKTPTLKWAKEKVLAIDPVERSLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPVEGWTVEGLESYVESSLQIIKKNIQLAYNTP 160
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NU61|A0A4D6NU61_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3062 PE=3 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 3.786e-96 Identity = 133/160 (83.12%), Postives = 150/160 (93.75%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNTP 160 MGE+SD+RWKGK VVELA+TN EVAW+V+EDFC+IHKWMSLDTCYQ EG+LGKPGLIRYCAST+ DVE TPTLKW KEK+LAIDPVERCL+YE++ENNMGFKFYVATLKVLS EEGGCKIEW FVCDP+EGWS EGLESYVESSL+++KKNI+LAYNTP Sbjct: 1 MGEESDKRWKGKVVVELAETNAEVAWTVVEDFCSIHKWMSLDTCYQLEGTLGKPGLIRYCASTV--DVENTPTLKWAKEKVLAIDPVERCLTYEIVENNMGFKFYVATLKVLSNEEGGCKIEWEFVCDPVEGWSCEGLESYVESSLKVVKKNIELAYNTP 158
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|V7AUA2|V7AUA2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G111100g PE=3 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 2.355e-90 Identity = 124/159 (77.99%), Postives = 144/159 (90.57%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNT 159 MGE+SD RW+GKAVVELADT EVAW+V+EDFCNIHKW+ LDTCYQ EG LGKPGLIRYCAS+IVDDV+KT T+KW KEKLLAIDPV+RCL+YEV+ENNMGFKFY+ T KVLS +E GCKIEW FVCDP++GWS++GLESYVESSLQ++KKNI+LAY Sbjct: 1 MGEESDPRWEGKAVVELADTTAEVAWTVLEDFCNIHKWIPLDTCYQLEGILGKPGLIRYCASSIVDDVDKTSTVKWAKEKLLAIDPVQRCLTYEVVENNMGFKFYLGTFKVLSMKEDGCKIEWEFVCDPVQGWSLQGLESYVESSLQVMKKNIELAYKA 159
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|V5N862|V5N862_PHAVU (Lachrymatory-factor synthase OS=Phaseolus vulgaris OX=3885 PE=2 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.714e-89 Identity = 124/159 (77.99%), Postives = 143/159 (89.94%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNT 159 MGE+SD +W+GKAVVELADT EVAW+V+EDFCNIHKW+ LDTCYQ EG LGKPGLIRYCASTIVDDVEKT T+KW KEKLLAIDPV+RCL+YEV+ENNMGFKFY+AT KVLS +E CKIEW FVCDP++GWS++GLESYV SSLQ++KKNI+LAY Sbjct: 1 MGEESDPKWEGKAVVELADTTAEVAWTVLEDFCNIHKWIPLDTCYQLEGILGKPGLIRYCASTIVDDVEKTSTVKWAKEKLLAIDPVQRCLTYEVVENNMGFKFYLATFKVLSMKEDECKIEWEFVCDPVQGWSLQGLESYVVSSLQVMKKNIELAYKA 159
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QEF0|A0A0B2QEF0_GLYSO (Lachrymatory-factor synthase OS=Glycine soja OX=3848 GN=glysoja_025042 PE=3 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 6.229e-76 Identity = 111/161 (68.94%), Postives = 135/161 (83.85%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDV--EKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNT 159 M E+S +W+GKA+VE+ T EVAW+V+EDFCNIHKW+SLDTCYQ +G LG+PGLIRYCAST+ + V EKT T+KW KEK+LAIDPV+RCL+YEV+ENNMGFK YVATLKVL E GCKIEWGFV DP+EGWS +GL+SYVES+LQ + K I+ AY+T Sbjct: 1 MEEESKSKWEGKAMVEVVGTGAEVAWAVLEDFCNIHKWISLDTCYQVDGILGQPGLIRYCASTVEEGVGAEKTTTIKWAKEKILAIDPVQRCLTYEVVENNMGFKSYVATLKVLPIEGDGCKIEWGFVSDPVEGWSCQGLKSYVESTLQSMAKKIEFAYST 161
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|C6TN70|C6TN70_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100798895 PE=2 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 6.229e-76 Identity = 111/161 (68.94%), Postives = 135/161 (83.85%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDV--EKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAYNT 159 M E+S +W+GKA+VE+ T EVAW+V+EDFCNIHKW+SLDTCYQ +G LG+PGLIRYCAST+ + V EKT T+KW KEK+LAIDPV+RCL+YEV+ENNMGFK YVATLKVL E GCKIEWGFV DP+EGWS +GL+SYVES+LQ + K I+ AY+T Sbjct: 1 MEEESKSKWEGKAMVEVVGTGAEVAWAVLEDFCNIHKWISLDTCYQVDGILGQPGLIRYCASTVEEGVGAEKTTTIKWAKEKILAIDPVQRCLTYEVVENNMGFKSYVATLKVLPIEGDGCKIEWGFVSDPVEGWSCQGLKSYVESTLQSMAKKIEFAYST 161
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4P886|A0A6A4P886_LUPAL (Putative polyketide cyclase/dehydrase, START-like domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00041221 PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 4.151e-66 Identity = 98/160 (61.25%), Postives = 123/160 (76.88%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREE----GGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLA 156 MGE+S +W+GKA+VELA+ + E W IEDFCNIHK + +D CY+ EG G+PGLIRYCA+TI D +T + W KEKLL+IDPV+RCLSYEV ENNMGFK YVAT+KVL+ E GGCKIEWGFV DPMEGW ++ L S+++S LQ++ KNI+ A Sbjct: 1 MGEESKAKWEGKAIVELAENSAEQVWPYIEDFCNIHKLIPIDICYKVEGMQGQPGLIRYCATTIKGDDAETTLMNWAKEKLLSIDPVQRCLSYEVNENNMGFKSYVATVKVLAINEDAKVGGCKIEWGFVSDPMEGWRLQDLNSFIDSHLQVMAKNIEAA 160
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371HDY3|A0A371HDY3_MUCPR (Lachrymatory-factor synthase (Fragment) OS=Mucuna pruriens OX=157652 GN=LFS PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 5.736e-64 Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 0 Query: 1 MGEKSDERWKGKAVVELADTNGEVAWSVIEDFCNIHKWMSLDTCYQQEGSLGKPGLIRYCASTIVDDVEKTPTLKWVKEKLLAIDPVERCLSYEVIENNMGFKFYVATLKVLSREEGGCKIEWGFVCDPMEGWSVEGLESYVESSLQIIKKNIQLAY 157 M E+S +W+GK+ +E+A T EVAW+ +EDFCN+HK + +DTCYQ EG +G+PGL+RYCA+ V V T T+ WVKEKLLAIDPV+ CLSYE+ ENNMGFK YV TLKVL + GCKIEWGFV DP+EGWS + L +YV+SSLQ + + IQLA+ Sbjct: 1 MAEESGLKWEGKSAIEVAGTGPEVAWAALEDFCNVHKLIPIDTCYQAEGVVGQPGLVRYCANA-VKGVADTTTILWVKEKLLAIDPVQHCLSYEITENNMGFKSYVTTLKVLPDRD-GCKIEWGFVSDPVEGWSFQDLVAYVQSSLQSMAEKIQLAH 155 The following BLAST results are available for this feature:
BLAST of rna-XM_014645265.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 1
BLAST of rna-XM_014645265.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 3
BLAST of rna-XM_014645265.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014645265.2_VrVC1973A-SNU_v1 ID=rna-XM_014645265.2_VrVC1973A-SNU_v1; Name=rna-XM_014645265.2; organism=Vigna radiata; type=mRNA; length=483bpback to top protein sequence of rna-XM_014645265.2_VrVC1973A-SNU_v1 >rna-XM_014645265.2_VrVC1973A-SNU_v1 ID=rna-XM_014645265.2_VrVC1973A-SNU_v1; Name=rna-XM_014645265.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=160bpback to top mRNA from alignment at chr05:16535522..16538877+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014645265.2_VrVC1973A-SNU_v1 ID=rna-XM_014645265.2_VrVC1973A-SNU_v1; Name=rna-XM_014645265.2; organism=Vigna radiata; type=mRNA; length=3356bp; location=Sequence derived from: chr05:16535522..16538877+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr05:16535522..16538877+ >rna-XM_014645265.2_VrVC1973A-SNU_v1 ID=rna-XM_014645265.2_VrVC1973A-SNU_v1; Name=rna-XM_014645265.2; organism=Vigna radiata; type=CDS; length=483bp; location=Sequence derived from: chr05:16535522..16538877+ (Vigna radiataback to top |