rna-XM_014647925.1
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Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UBL3|A0A1S3UBL3_VIGRR (calmodulin-like protein 4 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763767 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 2.299e-77 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 Query: 1 MFIPSFEKDQNMKNVSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
MFIPSFEKDQNMKNVSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK
Sbjct: 1 MFIPSFEKDQNMKNVSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RQ17|A0A0S3RQ17_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G271600 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.233e-56 Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0 Query: 9 DQNMKNVSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
+QNMK RSNLPLKII VPD KD HES MMQKIMISLKEAD NKDGRYNKDELK ALKDLGAFFP WRVRRAF+KVDVNHDGQISGKEIDSLLEYLCS G+GK
Sbjct: 10 NQNMKLGPRSNLPLKIIRVPDSKDPHESDMMQKIMISLKEADTNKDGRYNKDELKRALKDLGAFFPGWRVRRAFHKVDVNHDGQISGKEIDSLLEYLCSCGFGK 113
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V247|A0A0L9V247_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g271500 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 6.373e-55 Identity = 88/101 (87.13%), Postives = 90/101 (89.11%), Query Frame = 0 Query: 12 MKNVSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
MK RSNLPLKII VPD KD HES MMQKIMISLKEAD NKDGRYNKDELK ALKDLGAFFP WRVRRAF+KVDVNHDGQISGKEIDSLLEYLCS G+GK
Sbjct: 1 MKLGPRSNLPLKIIRVPDSKDPHESDMMQKIMISLKEADTNKDGRYNKDELKRALKDLGAFFPGWRVRRAFHKVDVNHDGQISGKEIDSLLEYLCSCGFGK 101
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V1N6|A0A0L9V1N6_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g271400 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 9.046e-43 Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0 Query: 15 VSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
V +SN PLK V K+ ++V M KIM LKEAD NKDG++NK+ELKHALKDLGAFFP WR +RAF KVD N+DGQISG+EIDSLLEYLCSHG+GK
Sbjct: 28 VPKSNSPLKTTFVSREKEIPQTVTMHKIMNVLKEADINKDGQFNKEELKHALKDLGAFFPGWRAKRAFKKVDANNDGQISGQEIDSLLEYLCSHGFGK 125
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RPX7|A0A0S3RPX7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G271400 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.210e-42 Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0 Query: 15 VSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
V +SN PLK V K+ ++V M KIM LKEAD NKDG++NK+ELKHALKDLGAFFP WR +RAF KVD N+DGQISG+EIDSLLEYLCSHG+GK
Sbjct: 60 VPKSNSPLKTTFVSREKEIPQTVTMHKIMNVLKEADINKDGQFNKEELKHALKDLGAFFPGWRAKRAFKKVDANNDGQISGQEIDSLLEYLCSHGFGK 157
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RQG9|A0A0S3RQG9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G271700 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.035e-38 Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 0 Query: 23 KIIDVPDRKDF--HESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
+II VP K + ES +M+KIM +LKEADRN DGRYNKDELKHALKDLGAFFP WR RAF+++D+N+DGQISG+EIDSLLEYL S G+GK
Sbjct: 7 RIIPVPVEKYYPESESAIMKKIMDTLKEADRNHDGRYNKDELKHALKDLGAFFPGWRANRAFDRIDINNDGQISGEEIDSLLEYLSSRGFGK 98
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V2E1|A0A0L9V2E1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g271600 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.035e-38 Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 0 Query: 23 KIIDVPDRKDF--HESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
+II VP K + ES +M+KIM +LKEADRN DGRYNKDELKHALKDLGAFFP WR RAF+++D+N+DGQISG+EIDSLLEYL S G+GK
Sbjct: 7 RIIPVPVEKYYPESESAIMKKIMDTLKEADRNHDGRYNKDELKHALKDLGAFFPGWRANRAFDRIDINNDGQISGEEIDSLLEYLSSRGFGK 98
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MGR1|A0A4D6MGR1_VIGUN (EF-Hand 1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g232 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 8.949e-37 Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 0 Query: 23 KIIDVPDRKDFHES--VMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
+II PD+K + ES +M+KIM SLKEAD N DGR+NKDELKHALKDLGA+FP WR RAF++VDVN DG ISG EIDSLLEYL S GYGK
Sbjct: 7 RIIPKPDQKSYPESENAIMKKIMDSLKEADANNDGRFNKDELKHALKDLGAYFPVWRTDRAFDRVDVNKDGHISGDEIDSLLEYLRSRGYGK 98
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|C6SZS2|C6SZS2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.759e-35 Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 0 Query: 21 PLKIIDVPDRKDF-HESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
P+KII P+RK ++V+MQKIM L+EAD N DGRY+KDELKHALK LGA P WR R F +VDVNHDG+ISG EI++LL+YL SHGYGK
Sbjct: 10 PMKIIPDPNRKTGPDDAVIMQKIMGKLREADSNNDGRYDKDELKHALKGLGAILPGWRANRCFGRVDVNHDGEISGAEIEALLQYLRSHGYGK 102
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RQ15|A0A0S3RQ15_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G271300 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.010e-35 Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 0 Query: 23 KIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK 112
K V KDF ++V M KIM LKEAD NKDG +NK+ELKHALKDLG+FFP WR +RAF K+D N+DGQISG+EIDSL EYL S G+GK
Sbjct: 6 KTTFVSREKDFPQTVTMHKIMNVLKEADINKDGHFNKEELKHALKDLGSFFPGWRAKRAFRKIDANNDGQISGQEIDSLFEYLHSRGFGK 95 The following BLAST results are available for this feature:
BLAST of rna-XM_014647925.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of rna-XM_014647925.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 0 Position : 0 Zoom : x 1
BLAST of rna-XM_014647925.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014647925.1_VrVC1973A-SNU_v1 ID=rna-XM_014647925.1_VrVC1973A-SNU_v1; Name=rna-XM_014647925.1; organism=Vigna radiata; type=mRNA; length=339bpback to top protein sequence of rna-XM_014647925.1_VrVC1973A-SNU_v1 >rna-XM_014647925.1_VrVC1973A-SNU_v1 ID=rna-XM_014647925.1_VrVC1973A-SNU_v1; Name=rna-XM_014647925.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=112bpback to top mRNA from alignment at chr06:35323217..35323555+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014647925.1_VrVC1973A-SNU_v1 ID=rna-XM_014647925.1_VrVC1973A-SNU_v1; Name=rna-XM_014647925.1; organism=Vigna radiata; type=mRNA; length=339bp; location=Sequence derived from: chr06:35323217..35323555+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr06:35323217..35323555+ >rna-XM_014647925.1_VrVC1973A-SNU_v1 ID=rna-XM_014647925.1_VrVC1973A-SNU_v1; Name=rna-XM_014647925.1; organism=Vigna radiata; type=CDS; length=339bp; location=Sequence derived from: chr06:35323217..35323555+ (Vigna radiataback to top |