rna-XM_014657382.2

Transcript Overview
Namerna-XM_014657382.2
Unique Namerna-XM_014657382.2_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length687
Productphytochrome A-associated F-box protein
References
External references for this mRNA
DatabaseAccession
GeneID106771410
GenbankXM_014657382.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr08chromosomechr08:27719261..27720245 +Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asvrvL369Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0431Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvrvL454Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvrvL455Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anvrvL0800Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0804Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL1114Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivrvL411Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivrvL430Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavrvL232Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL346Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL0658Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL273Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvrvL386Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvrvL232Pisum sativum Cameor genome v1aPisum sativum
pvvrvL058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL562Pisum sativum Cameor genome v1aPisum sativum
pvvrvL612Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvrvL393Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvrvL603Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvrvL133Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvL408Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvrvL610Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssR791Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR810Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR839Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuaR537Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR662Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuR576Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR575Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuaR598Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR624Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuR644Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvrvL212Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvrvL320Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL316Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvrvL217Cicer arietinum
carvrvL317Cicer arietinum
ccavrvL238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL270Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL375Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vrvvumR620Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR720Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR746Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR803Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR641Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR683Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL405Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL408Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL583Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvrvL053Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL567Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vrvvunR541Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR584Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR604Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.08G157900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_24649Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun07g119401.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
PvulFLAVERTChr07.1000959Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.04G394400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
LR48_mrnaVigan02g105900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
LR48_mrnaVigan03g284600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat3g022200.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_03693.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_006860Cajanus cajan Asha genome v1.0Cajanus cajan
Va02G038990.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr07.2742Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.007G146000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigan.08G247800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106771410gene-LOC106771410_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014657382.2-1exon-XM_014657382.2-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014512868.1cds-XP_014512868.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014657382.2_VrVC1973A-SNU_v1rna-XM_014657382.2_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014657382.2_VrVC1973A-SNU_v1rna-XM_014657382.2_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LEA8|EID1_ARATH (Phytochrome A-associated F-box protein OS=Arabidopsis thaliana OX=3702 GN=EID1 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 2.287e-58
Identity = 90/144 (62.50%), Postives = 110/144 (76.39%), Query Frame = 0 
Query:   88 DRGASKNPKTCRK--PHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSL-DGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            D    K  K CR    HLASG W+L REQG KLLA +FR DCLY+C+WPGC+H  +KR YMLFRG+FKDFK +RVW ++ DG++ K   ++CAFC C  TWDLHS+FCLRR F +  +GEPVVRAYVCENGHVSGAWT +PL++
Sbjct:  193 DLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336

HSP 2 Score: 94.7449 bits (234), Expect = 1.021e-21
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0 
Query:    7 FSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSD-----------------------SPATYASLLKLAVCCPGLRHAGI 85
            FS + +D+V  +F KL+DDPR+WAR+ACVCT+FSS++R+ C KT+C   +P+++SD                        P  +ASL KLAVCCPGL HAGI
Sbjct:    6 FSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGI 107
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LF38|EDL1_ARATH (EID1-like F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EDL1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.027e-15
Identity = 64/233 (27.47%), Postives = 99/233 (42.49%), Query Frame = 0 
Query:    4 DCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPAT--------YASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVE-CAFCTCRYTWDLHSAFCLRRGFRYQIEG-EPVVRAYVCENGHVSGAWTDVPL 226
             C    LN+D++L VF  L  +P+  A ++CVC  F    +   WK  C    P ++ D  ++        + +L KL + C G    G+           + + P          R  G  LL  Q R D LY+CD    +   ++    LFRGIFK F T++V   +        P E C +C  +  W +  A  + +    ++E  E  +  +VC NGH+ G  T  PL
Sbjct:   16 QCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNS--------SVQIPGHFVYRTRFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKL-WSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPL 239
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FLZ8|EDL2_ARATH (EID1-like F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EDL2 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 6.501e-11
Identity = 61/233 (26.18%), Postives = 94/233 (40.34%), Query Frame = 0 
Query:    5 CGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPA--------TYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFR-DDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVE-CAFCTCRYTWDLHSAFCLRRGFRYQIEG-EPVVRAYVCENGHVSGAWTDVPL 226
            C    L+++++  +   L  +P   A ++CVC  F  L +   WK  C    P ++SD  +        ++ +L KL + C G    G+  D   S         H         R  G   L  Q R DD LY+ D    +   +      FRGIFK F  ++V   L        P E C +C  +  W +  A  + +    ++   E  +  YVC NGH+ G  T +PL
Sbjct:   17 CTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISG--------HFVHRT-RFSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKAKL-WSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPL 239
[Close]
BLAST of rna-XM_014657382.2 vs. Araport11
Match: AT4G02440.1 (| F-box family protein | Chr4:1072555-1073565 FORWARD LENGTH=336 | 201606)

HSP 1 Score: 190.66 bits (483), Expect = 2.340e-59
Identity = 90/144 (62.50%), Postives = 110/144 (76.39%), Query Frame = 0 
Query:   88 DRGASKNPKTCRK--PHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSL-DGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            D    K  K CR    HLASG W+L REQG KLLA +FR DCLY+C+WPGC+H  +KR YMLFRG+FKDFK +RVW ++ DG++ K   ++CAFC C  TWDLHS+FCLRR F +  +GEPVVRAYVCENGHVSGAWT +PL++
Sbjct:  193 DLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336

HSP 2 Score: 94.7449 bits (234), Expect = 1.044e-22
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0 
Query:    7 FSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSD-----------------------SPATYASLLKLAVCCPGLRHAGI 85
            FS + +D+V  +F KL+DDPR+WAR+ACVCT+FSS++R+ C KT+C   +P+++SD                        P  +ASL KLAVCCPGL HAGI
Sbjct:    6 FSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGI 107
[Close]
BLAST of rna-XM_014657382.2 vs. Araport11
Match: AT5G15440.1 (| EID1-like 1 | Chr5:5013158-5014131 FORWARD LENGTH=293 | 201606)

HSP 1 Score: 77.411 bits (189), Expect = 1.051e-16
Identity = 64/233 (27.47%), Postives = 99/233 (42.49%), Query Frame = 0 
Query:    4 DCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPAT--------YASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVE-CAFCTCRYTWDLHSAFCLRRGFRYQIEG-EPVVRAYVCENGHVSGAWTDVPL 226
             C    LN+D++L VF  L  +P+  A ++CVC  F    +   WK  C    P ++ D  ++        + +L KL + C G    G+           + + P          R  G  LL  Q R D LY+CD    +   ++    LFRGIFK F T++V   +        P E C +C  +  W +  A  + +    ++E  E  +  +VC NGH+ G  T  PL
Sbjct:   16 QCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNS--------SVQIPGHFVYRTRFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKL-WSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPL 239
[Close]
BLAST of rna-XM_014657382.2 vs. Araport11
Match: AT5G39360.1 (| EID1-like 2 | Chr5:15753313-15754062 REVERSE LENGTH=249 | 201606)

HSP 1 Score: 63.5438 bits (153), Expect = 6.651e-12
Identity = 61/233 (26.18%), Postives = 94/233 (40.34%), Query Frame = 0 
Query:    5 CGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPA--------TYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFR-DDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVE-CAFCTCRYTWDLHSAFCLRRGFRYQIEG-EPVVRAYVCENGHVSGAWTDVPL 226
            C    L+++++  +   L  +P   A ++CVC  F  L +   WK  C    P ++SD  +        ++ +L KL + C G    G+  D   S         H         R  G   L  Q R DD LY+ D    +   +      FRGIFK F  ++V   L        P E C +C  +  W +  A  + +    ++   E  +  YVC NGH+ G  T +PL
Sbjct:   17 CTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISG--------HFVHRT-RFSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKAKL-WSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPL 239
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V3F0|A0A1S3V3F0_VIGRR (phytochrome A-associated F-box protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106771410 PE=4 SV=1)

HSP 1 Score: 471.855 bits (1213), Expect = 3.469e-168
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 
Query:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS
Sbjct:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SS99|A0A0S3SS99_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G247800 PE=4 SV=1)

HSP 1 Score: 452.21 bits (1162), Expect = 1.943e-160
Identity = 220/228 (96.49%), Postives = 221/228 (96.93%), Query Frame = 0 
Query:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            MEED GFSMLNDDIVL VFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPAT ASLLKLAVCCPGLRHAGIAADR ASKNPKTCRKPHLA GNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCT RYTWDLHSAFCLRRGF YQI+GEPVVRAYVCENGHVSGAWTDVPLFS
Sbjct:    1 MEEDSGFSMLNDDIVLVVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATCASLLKLAVCCPGLRHAGIAADRDASKNPKTCRKPHLARGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTSRYTWDLHSAFCLRRGFGYQIDGEPVVRAYVCENGHVSGAWTDVPLFS 228
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TXK5|A0A0L9TXK5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g105900 PE=4 SV=1)

HSP 1 Score: 452.21 bits (1162), Expect = 1.943e-160
Identity = 220/228 (96.49%), Postives = 221/228 (96.93%), Query Frame = 0 
Query:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            MEED GFSMLNDDIVL VFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPAT ASLLKLAVCCPGLRHAGIAADR ASKNPKTCRKPHLA GNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCT RYTWDLHSAFCLRRGF YQI+GEPVVRAYVCENGHVSGAWTDVPLFS
Sbjct:    1 MEEDSGFSMLNDDIVLVVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATCASLLKLAVCCPGLRHAGIAADRDASKNPKTCRKPHLARGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTSRYTWDLHSAFCLRRGFGYQIDGEPVVRAYVCENGHVSGAWTDVPLFS 228
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|V7BII5|V7BII5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G146000g PE=4 SV=1)

HSP 1 Score: 432.565 bits (1111), Expect = 1.097e-152
Identity = 206/228 (90.35%), Postives = 218/228 (95.61%), Query Frame = 0 
Query:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            MEE+  FSMLNDDIVLA+FAKLEDDPRHWA VA VCTRFSSLIRHFCWKTKCSQTLPSLLSDSPAT ASLLKLAVCCPGLRHAG+A DR A+KNPKTCRKPHLA GNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPH++RKYMLFRG+FKDFKTTRVW SLDG+KR+K+PVECAFCT R+TWDLHSAFCLRRGFRYQI+GEPVVRAYVCENGHVSGAWTDVPLFS
Sbjct:    1 MEEESVFSMLNDDIVLAIFAKLEDDPRHWACVASVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATSASLLKLAVCCPGLRHAGVAVDRDAAKNPKTCRKPHLACGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHQERKYMLFRGVFKDFKTTRVWRSLDGEKRRKIPVECAFCTSRHTWDLHSAFCLRRGFRYQIDGEPVVRAYVCENGHVSGAWTDVPLFS 228
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|T2DPN3|T2DPN3_PHAVU (Phytochrome A-associated F-box protein OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 3.662e-150
Identity = 203/226 (89.82%), Postives = 215/226 (95.13%), Query Frame = 0 
Query:    3 EDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            E+  FSMLNDDIVLA+FAKLEDDPRHWA VA VCTRFSSLIRHFCWKTKCSQTLPSLLSDSPAT ASLLKLAVCCPGLRHAG+A DR A+KNPKTCRKPHLA GNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPH++RKYMLFRG+FKDFKTTRVW SLDG+KR+K+PVECAFCT R+TWDLHSAFCLRR FRYQI+GEPVVRAYVCENGHVSGAWTDVPLFS
Sbjct:    2 EESVFSMLNDDIVLAIFAKLEDDPRHWACVASVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATSASLLKLAVCCPGLRHAGVAVDRDAAKNPKTCRKPHLACGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHQERKYMLFRGVFKDFKTTRVWRSLDGEKRRKIPVECAFCTSRHTWDLHSAFCLRRSFRYQIDGEPVVRAYVCENGHVSGAWTDVPLFS 227
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151U4E1|A0A151U4E1_CAJCA (Phytochrome A-associated F-box protein OS=Cajanus cajan OX=3821 GN=KK1_006860 PE=4 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 3.022e-118
Identity = 169/230 (73.48%), Postives = 195/230 (84.78%), Query Frame = 0 
Query:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPA--TYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            MEE   FS+++DDIVLA+F+KLEDDPRHWARVACVCTRF SL+RH CW+TKCSQT PSL++DSP+  T ASLLKLAVCCPGLRHAG+AA +GA       R+PHLA GNWDLRREQGCKLLA QFR D LYLCDWPGCVH  + R YMLFRG+F++FK TRVW +++ DKR+K+ VECAFCTCR+TWDL SAFCLRRGF    +GEPVVRA+VCENGHVSGAWT VPL+S
Sbjct:    1 MEESV-FSLVSDDIVLAIFSKLEDDPRHWARVACVCTRFLSLVRHSCWRTKCSQTFPSLITDSPSASTSASLLKLAVCCPGLRHAGVAA-KGADS-----RRPHLARGNWDLRREQGCKLLATQFRRDSLYLCDWPGCVHSQENRNYMLFRGLFQNFKATRVWRTINDDKRRKIHVECAFCTCRHTWDLGSAFCLRRGFGCHRDGEPVVRAFVCENGHVSGAWTHVPLYS 223
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445LIC8|A0A445LIC8_GLYSO (Phytochrome A-associated F-box protein OS=Glycine soja OX=3848 GN=D0Y65_002711 PE=4 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 6.186e-111
Identity = 160/228 (70.18%), Postives = 183/228 (80.26%), Query Frame = 0 
Query:    1 MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYAS--LLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPL 226
            MEE   F+ L DDIVL++ AKL+DDPRHWAR ACV TRFS+LIRHFCWKTKCSQT PS L  S +      LLKLAVCCPGLRHAGI ADR A+K    CR  HLA G   LRREQGCKLLARQFRDD L+LCDWPGCVH +++R YMLFRG F +FK + VW S+  +KR+K+ VECAFCTC++TWDL SAFCLRRGF Y ++GEPVVRAYVCENGHVSGAWT++PL
Sbjct:    1 MEESV-FAALTDDIVLSILAKLDDDPRHWARAACVSTRFSTLIRHFCWKTKCSQTFPSSLISSDSPSTWSSLLKLAVCCPGLRHAGIPADRNAAKRMNICRNSHLAGGYRHLRREQGCKLLARQFRDDNLFLCDWPGCVHSYQRRDYMLFRGFFHNFKASGVWRSISDEKRRKIDVECAFCTCQHTWDLQSAFCLRRGFGYHLDGEPVVRAYVCENGHVSGAWTNIPL 227
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151S8F1|A0A151S8F1_CAJCA (Phytochrome A-associated F-box protein OS=Cajanus cajan OX=3821 GN=KK1_027223 PE=4 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.202e-103
Identity = 151/227 (66.52%), Postives = 177/227 (77.97%), Query Frame = 0 
Query:    2 EEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            EE   FS L DDIVL +F  LE+DPRHWAR+ACVCT+FS+LIR FCWKTKCS T+PS L  +     SL KL+VCCPGLRHAG+   R  S+  ++    HLASG+W L REQG KLLARQFRDDCLY+CDWPGCVH  +KRKY LFRG+FK+FK TRVW ++    + KL + CAFC C +TWDLHSAFCLRRGF +  +GEPVVRAYVCENGHVSGAWTDVPL++
Sbjct:    7 EEKNVFSELTDDIVLNIFFNLEEDPRHWARLACVCTKFSALIRDFCWKTKCSGTIPSDLLSAADPPLSLHKLSVCCPGLRHAGL---RKVSRAWRS----HLASGSWSLSREQGSKLLARQFRDDCLYVCDWPGCVHKEEKRKYRLFRGVFKNFKRTRVWRTIHDGNKMKLDLPCAFCACMFTWDLHSAFCLRRGFGFHDDGEPVVRAYVCENGHVSGAWTDVPLYT 226
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1RK86|A0A4P1RK86_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_24649 PE=4 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 8.635e-98
Identity = 150/245 (61.22%), Postives = 179/245 (73.06%), Query Frame = 0 
Query:    7 FSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPSLL--SDSPATYASLLKLAVCCPGLRHAGI-------------AADRGASKNPKTCR---KPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSLDGD-----KRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            F +LNDDI+  +FAKL+DDPRH ARVACV TRF SLIR FCWKTK   +L S+L   DSP+ + +L KL+VCCPGLRH+G+             +     SKN K C    K HLA+GNW+L REQG KLLARQFRDDCLY+CDWPGCVH  +KRKY LFRG+FK+FK TRVW +++       +R K+ + CAFC C   WDLHSAFCLRRGF +  +GEPVVRAYVCENGHVSGAWTDVP++S
Sbjct:    6 FEILNDDIIFTIFAKLDDDPRHCARVACVSTRFFSLIRDFCWKTKSFPSLFSVLLSDDSPSGWFTLHKLSVCCPGLRHSGVLPTTITTTAAAAESQGERCSKNRKICFGYWKSHLATGNWNLSREQGSKLLARQFRDDCLYICDWPGCVHFEEKRKYNLFRGVFKNFKQTRVWRTINDGVGTERERSKIDLGCAFCHCTQIWDLHSAFCLRRGFGFHDDGEPVVRAYVCENGHVSGAWTDVPMYS 250
[Close]
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4QD70|A0A6A4QD70_LUPAL (Putative F-box domain-containing protein OS=Lupinus albus OX=3870 GN=Lalb_Chr06g0163461 PE=4 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 9.423e-96
Identity = 146/235 (62.13%), Postives = 176/235 (74.89%), Query Frame = 0 
Query:    7 FSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKTKCSQTLPS--LLSDSPATYASLLKLAVCCPGLRHAGI---------AADRGASKNPKTCRKPHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRGIFKDFKTTRVWTSL-DGD-KRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQIEGEPVVRAYVCENGHVSGAWTDVPLFS 228
            F +L+DDI+  +FAKL+DDPRH ARVACV TRF SLIR FCWKTKC  +L S  L  D+PA + +L KL+VCCPGL H+G+         A++     N     K HLA GNW+L REQG KLL RQFRDDCLY+C+WPGCVH  +KRKY LFRG+FK+FK TRVW S+ DG+ KR K+ + CAFC C + WDLHSAFCLRRGF +  +GEPVVRAYVC+NGHVSGAWT VP++S
Sbjct:    6 FEILDDDIIFTIFAKLDDDPRHCARVACVSTRFFSLIRDFCWKTKCFPSLFSDLLSDDTPAGWFTLHKLSVCCPGLLHSGVLPSTTTTTTASESEGENNCFGNWKSHLARGNWNLSREQGSKLLGRQFRDDCLYICEWPGCVHFEEKRKYNLFRGVFKNFKQTRVWRSINDGERKRSKIDLGCAFCHCTHIWDLHSAFCLRRGFGFHHDGEPVVRAYVCDNGHVSGAWTHVPMYS 240
The following BLAST results are available for this feature:
BLAST of rna-XM_014657382.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q8LEA8|EID1_ARATH2.287e-5862.50Phytochrome A-associated F-box protein OS=Arabidop... [more]
sp|Q9LF38|EDL1_ARATH1.027e-1527.47EID1-like F-box protein 1 OS=Arabidopsis thaliana ... [more]
sp|Q9FLZ8|EDL2_ARATH6.501e-1126.18EID1-like F-box protein 2 OS=Arabidopsis thaliana ... [more]
back to top
BLAST of rna-XM_014657382.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G02440.12.340e-5962.50| F-box family protein | Chr4:1072555-1073565 FORW... [more]
AT5G15440.11.051e-1627.47| EID1-like 1 | Chr5:5013158-5014131 FORWARD LENGT... [more]
AT5G39360.16.651e-1226.18| EID1-like 2 | Chr5:15753313-15754062 REVERSE LEN... [more]
back to top
BLAST of rna-XM_014657382.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3V3F0|A0A1S3V3F0_VIGRR3.469e-168100.00phytochrome A-associated F-box protein OS=Vigna ra... [more]
tr|A0A0S3SS99|A0A0S3SS99_PHAAN1.943e-16096.49Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9TXK5|A0A0L9TXK5_PHAAN1.943e-16096.49Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|V7BII5|V7BII5_PHAVU1.097e-15290.35Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|T2DPN3|T2DPN3_PHAVU3.662e-15089.82Phytochrome A-associated F-box protein OS=Phaseolu... [more]
tr|A0A151U4E1|A0A151U4E1_CAJCA3.022e-11873.48Phytochrome A-associated F-box protein OS=Cajanus ... [more]
tr|A0A445LIC8|A0A445LIC8_GLYSO6.186e-11170.18Phytochrome A-associated F-box protein OS=Glycine ... [more]
tr|A0A151S8F1|A0A151S8F1_CAJCA4.202e-10366.52Phytochrome A-associated F-box protein OS=Cajanus ... [more]
tr|A0A4P1RK86|A0A4P1RK86_LUPAN8.635e-9861.22Uncharacterized protein OS=Lupinus angustifolius O... [more]
tr|A0A6A4QD70|A0A6A4QD70_LUPAL9.423e-9662.13Putative F-box domain-containing protein OS=Lupinu... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 2..50
e-value: 3.6E-5
score: 25.6
IPR040267F-box protein EID1-likePANTHERPTHR31348EID1-LIKE F-BOX PROTEIN 2-RELATEDcoord: 3..226
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 6..75

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014657382.2_VrVC1973A-SNU_v1 ID=rna-XM_014657382.2_VrVC1973A-SNU_v1; Name=rna-XM_014657382.2; organism=Vigna radiata; type=mRNA; length=687bp
ATGGAAGAGGACTGTGGTTTCTCAATGCTAAACGACGACATCGTGCTCGC
GGTTTTCGCGAAGCTGGAAGACGATCCACGCCACTGGGCTCGCGTGGCCT
GCGTCTGCACAAGATTCTCTTCTCTCATTCGCCACTTCTGCTGGAAGACT
AAGTGTTCCCAAACCCTCCCTTCACTCCTCTCCGATTCCCCCGCCACCTA
CGCCTCCCTCCTCAAGCTCGCCGTCTGCTGCCCCGGTCTCCGCCACGCGG
GCATCGCCGCTGATCGGGGCGCCTCAAAAAACCCCAAGACCTGCCGGAAG
CCGCATTTGGCTAGCGGGAATTGGGATCTGAGGAGGGAGCAGGGCTGCAA
GCTTCTGGCGCGACAGTTCCGCGATGATTGCTTGTACCTCTGTGACTGGC
CTGGCTGCGTCCACCCCCACAAGAAGCGCAAGTACATGCTCTTCAGAGGG
ATTTTCAAGGACTTCAAAACTACCCGCGTTTGGACAAGCCTTGACGGTGA
TAAAAGAAAGAAACTTCCCGTGGAGTGTGCGTTTTGCACGTGCCGATACA
CTTGGGACCTCCACTCTGCTTTCTGTCTCAGACGAGGTTTCAGGTACCAA
ATTGAAGGGGAACCTGTTGTTCGAGCTTATGTTTGTGAAAACGGTCATGT
CTCTGGCGCTTGGACCGATGTCCCCTTGTTCTCTTGA
back to top

protein sequence of rna-XM_014657382.2_VrVC1973A-SNU_v1

>rna-XM_014657382.2_VrVC1973A-SNU_v1 ID=rna-XM_014657382.2_VrVC1973A-SNU_v1; Name=rna-XM_014657382.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=228bp
MEEDCGFSMLNDDIVLAVFAKLEDDPRHWARVACVCTRFSSLIRHFCWKT
KCSQTLPSLLSDSPATYASLLKLAVCCPGLRHAGIAADRGASKNPKTCRK
PHLASGNWDLRREQGCKLLARQFRDDCLYLCDWPGCVHPHKKRKYMLFRG
IFKDFKTTRVWTSLDGDKRKKLPVECAFCTCRYTWDLHSAFCLRRGFRYQ
IEGEPVVRAYVCENGHVSGAWTDVPLFS
back to top

mRNA from alignment at chr08:27719261..27720245+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014657382.2_VrVC1973A-SNU_v1 ID=rna-XM_014657382.2_VrVC1973A-SNU_v1; Name=rna-XM_014657382.2; organism=Vigna radiata; type=mRNA; length=985bp; location=Sequence derived from: chr08:27719261..27720245+ (Vigna radiata
AATCCAGTGGTATTCTGTATTGTATAAATGGTAGAAATCTCCATCTGAAG
AGAAAGTCTGAGTTGTGGTCACTGAAAACCAAGCTTCAATGGAAGAGGAC
TGTGGTTTCTCAATGCTAAACGACGACATCGTGCTCGCGGTTTTCGCGAA
GCTGGAAGACGATCCACGCCACTGGGCTCGCGTGGCCTGCGTCTGCACAA
GATTCTCTTCTCTCATTCGCCACTTCTGCTGGAAGACTAAGTGTTCCCAA
ACCCTCCCTTCACTCCTCTCCGATTCCCCCGCCACCTACGCCTCCCTCCT
CAAGCTCGCCGTCTGCTGCCCCGGTCTCCGCCACGCGGGCATCGCCGCTG
ATCGGGGCGCCTCAAAAAACCCCAAGACCTGCCGGAAGCCGCATTTGGCT
AGCGGGAATTGGGATCTGAGGAGGGAGCAGGGCTGCAAGCTTCTGGCGCG
ACAGTTCCGCGATGATTGCTTGTACCTCTGTGACTGGCCTGGCTGCGTCC
ACCCCCACAAGAAGCGCAAGTACATGCTCTTCAGAGGGATTTTCAAGGAC
TTCAAAACTACCCGCGTTTGGACAAGCCTTGACGGtgataaaagaaagaa
acttcCCGTGGAGTGTGCGTTTTGCACGTGCCGATACACTTGGGACCTCC
ACTCTGCTTTCTGTCTCAGACGAGGTTTCAGGTACCAAATTGAAGGGGAA
CCTGTTGTTCGAGCTTATGTTTGTGAAAACGGTCATGTCTCTGGCGCTTG
GACCGATGTCCCCTTGTTCTCTTGATTCTCTTTTTTCTGCTTCTCAACAT
GCTGCTTTTGTTATTTCTTCCAATAGATACAAAAATCTTAGAAGACATAa
ctgaaattttattatgaCGAACAAAATTCGGTCCTTAATCCCGCTTCTTG
TACGATTTGGGATTATCACGGCCCTATGTTTTTGAATCTTGTGGTTAGAG
TACTGAATAATTATGTTTGGAGTACTTAGAtctta
back to top

Coding sequence (CDS) from alignment at chr08:27719261..27720245+

>rna-XM_014657382.2_VrVC1973A-SNU_v1 ID=rna-XM_014657382.2_VrVC1973A-SNU_v1; Name=rna-XM_014657382.2; organism=Vigna radiata; type=CDS; length=687bp; location=Sequence derived from: chr08:27719261..27720245+ (Vigna radiata
ATGGAAGAGGACTGTGGTTTCTCAATGCTAAACGACGACATCGTGCTCGC
GGTTTTCGCGAAGCTGGAAGACGATCCACGCCACTGGGCTCGCGTGGCCT
GCGTCTGCACAAGATTCTCTTCTCTCATTCGCCACTTCTGCTGGAAGACT
AAGTGTTCCCAAACCCTCCCTTCACTCCTCTCCGATTCCCCCGCCACCTA
CGCCTCCCTCCTCAAGCTCGCCGTCTGCTGCCCCGGTCTCCGCCACGCGG
GCATCGCCGCTGATCGGGGCGCCTCAAAAAACCCCAAGACCTGCCGGAAG
CCGCATTTGGCTAGCGGGAATTGGGATCTGAGGAGGGAGCAGGGCTGCAA
GCTTCTGGCGCGACAGTTCCGCGATGATTGCTTGTACCTCTGTGACTGGC
CTGGCTGCGTCCACCCCCACAAGAAGCGCAAGTACATGCTCTTCAGAGGG
ATTTTCAAGGACTTCAAAACTACCCGCGTTTGGACAAGCCTTGACGGtga
taaaagaaagaaacttcCCGTGGAGTGTGCGTTTTGCACGTGCCGATACA
CTTGGGACCTCCACTCTGCTTTCTGTCTCAGACGAGGTTTCAGGTACCAA
ATTGAAGGGGAACCTGTTGTTCGAGCTTATGTTTGTGAAAACGGTCATGT
CTCTGGCGCTTGGACCGATGTCCCCTTGTTCTCTTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR040267EID1-like
IPR036047F-box-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding