rna-XM_014660413.2
|
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014660413.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SSC1|Y1801_ARATH (MAPK kinase substrate protein At1g80180 OS=Arabidopsis thaliana OX=3702 GN=At1g80180 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.242e-24 Identity = 64/139 (46.04%), Postives = 80/139 (57.55%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAA-------ATAAADNLNARTTPP-------PTTT---IQRTRSNG------YR-MGKVSPAIDPPSPKLSACGFCTAFSKT--GEKGRPAKTSAKHRSR 113
MAGLQRS +SFRRQGSSG+VWDD+L+ AEL+ D K A + +TT P P T ++R+RSNG +R G+VSPA+DPPSP+LSA G C+AF K G+K K AK RSR
Sbjct: 1 MAGLQRSTISFRRQGSSGIVWDDRLI-AELSQQAANDRKGETLQQDEQAKLITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTGRVSPAVDPPSPRLSAFGCCSAFGKKQPGKKVNQRKRPAKRRSR 138
BLAST of rna-XM_014660413.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9XI29|Y1540_ARATH (Uncharacterized protein At1g15400 OS=Arabidopsis thaliana OX=3702 GN=At1g15400 PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.839e-22 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELN---NDQNQD---------PKAAATAAADNLNARTTPPPTTT-------IQRTRSNG------YRM-GKVSPAIDPPSPKLSACGFCTAFSK 96
M GLQRS +SFRRQGSSG+V+DD+L+ AELN N++ +D P + ++ ++ + P T I+R+RSNG +R G+VSPA+DPPSP++S+CG C+AF K
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLI-AELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGK 121
BLAST of rna-XM_014660413.2 vs. Araport11
Match: AT1G80180.1 (| hypothetical protein | Chr1:30157057-30157473 REVERSE LENGTH=138 | 201606) HSP 1 Score: 92.8189 bits (229), Expect = 3.317e-25 Identity = 64/139 (46.04%), Postives = 80/139 (57.55%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAA-------ATAAADNLNARTTPP-------PTTT---IQRTRSNG------YR-MGKVSPAIDPPSPKLSACGFCTAFSKT--GEKGRPAKTSAKHRSR 113
MAGLQRS +SFRRQGSSG+VWDD+L+ AEL+ D K A + +TT P P T ++R+RSNG +R G+VSPA+DPPSP+LSA G C+AF K G+K K AK RSR
Sbjct: 1 MAGLQRSTISFRRQGSSGIVWDDRLI-AELSQQAANDRKGETLQQDEQAKLITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTGRVSPAVDPPSPRLSAFGCCSAFGKKQPGKKVNQRKRPAKRRSR 138
BLAST of rna-XM_014660413.2 vs. Araport11
Match: AT1G15400.2 (| hypothetical protein | Chr1:5296402-5296824 REVERSE LENGTH=140 | 201606) HSP 1 Score: 88.1965 bits (217), Expect = 1.802e-23 Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELN---NDQNQD---------PKAAATAAADNLNARTTPPPTTT-------IQRTRSNG------YRM-GKVSPAIDPPSPKLSACGFCTAFSKT 97
M GLQRS +SFRRQGSSG+V+DD+L+ AELN N++ +D P + ++ ++ + P T I+R+RSNG +R G+VSPA+DPPSP++S+CG C+AF K
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLI-AELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGKN 122
BLAST of rna-XM_014660413.2 vs. Araport11
Match: AT1G15400.1 (| hypothetical protein | Chr1:5296033-5296824 REVERSE LENGTH=145 | 201606) HSP 1 Score: 88.5817 bits (218), Expect = 1.819e-23 Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELN---NDQNQD---------PKAAATAAADNLNARTTPPPTTT-------IQRTRSNG------YRM-GKVSPAIDPPSPKLSACGFCTAFSKT 97
M GLQRS +SFRRQGSSG+V+DD+L+ AELN N++ +D P + ++ ++ + P T I+R+RSNG +R G+VSPA+DPPSP++S+CG C+AF K
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLI-AELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGKN 122
BLAST of rna-XM_014660413.2 vs. Araport11
Match: AT1G15400.3 (| hypothetical protein | Chr1:5296019-5296824 REVERSE LENGTH=148 | 201606) HSP 1 Score: 88.5817 bits (218), Expect = 1.881e-23 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELN---NDQNQD---------PKAAATAAADNLNARTTPPPTTT-------IQRTRSNG------YRM-GKVSPAIDPPSPKLSACGFCTAFSK 96
M GLQRS +SFRRQGSSG+V+DD+L+ AELN N++ +D P + ++ ++ + P T I+R+RSNG +R G+VSPA+DPPSP++S+CG C+AF K
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLI-AELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGK 121
BLAST of rna-XM_014660413.2 vs. Araport11
Match: AT5G20100.1 (| plant/protein | Chr5:6790153-6790494 FORWARD LENGTH=113 | 201606) HSP 1 Score: 82.0333 bits (201), Expect = 2.844e-21 Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = 0
Query: 4 LQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSN-----GYRMGKVSPAIDPPSPKLSA--CGFCTAFSKTGE 99
LQRS SFRRQGSSGL+W+D+ +S E+ ND+ Q+ + ++ + T T++R+ S+ G R+G++SPA+DPPSPK+SA CGFC+ FS G+
Sbjct: 3 LQRSTASFRRQGSSGLIWNDRFLSGEIRNDERQEDR------CNDHRDGSMAATTATVKRSASDGGCGHGGRLGELSPALDPPSPKISAVGCGFCSLFSSNGK 99
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VCQ3|A0A1S3VCQ3_VIGRR (MAPK kinase substrate protein At1g80180 OS=Vigna radiata var. radiata OX=3916 GN=LOC106773679 PE=4 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 5.341e-77 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNGYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNGYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR
Sbjct: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNGYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3T0X0|A0A0S3T0X0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G222500 PE=4 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.326e-68 Identity = 109/116 (93.97%), Postives = 109/116 (93.97%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPP--TTTIQRTRSN-GYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
MAGLQRSAVSFRRQGSSGLVWDDK VSAELNNDQNQDPKAAATAAADNLNARTTP P TTTIQRTRSN GYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGR AK SAKHRSR
Sbjct: 1 MAGLQRSAVSFRRQGSSGLVWDDKSVSAELNNDQNQDPKAAATAAADNLNARTTPQPTTTTTIQRTRSNSGYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRRAKPSAKHRSR 116
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TB04|A0A0L9TB04_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan406s011900 PE=4 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.326e-68 Identity = 109/116 (93.97%), Postives = 109/116 (93.97%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPP--TTTIQRTRSN-GYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
MAGLQRSAVSFRRQGSSGLVWDDK VSAELNNDQNQDPKAAATAAADNLNARTTP P TTTIQRTRSN GYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGR AK SAKHRSR
Sbjct: 1 MAGLQRSAVSFRRQGSSGLVWDDKSVSAELNNDQNQDPKAAATAAADNLNARTTPQPTTTTTIQRTRSNSGYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRRAKPSAKHRSR 116
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MN48|A0A4D6MN48_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g112 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 8.708e-61 Identity = 102/116 (87.93%), Postives = 104/116 (89.66%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNART-TPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKG-RPAKTSAKHRSR 113
MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQD KAAA DNLNA+T TPPPT IQRTRSNG YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKG R AK +AKHRSR
Sbjct: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDQKAAA----DNLNAKTATPPPTAAIQRTRSNGGYRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRRRAKPTAKHRSR 112
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|I1KH35|I1KH35_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100807604 PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.483e-49 Identity = 86/115 (74.78%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAAD-NLNARTTPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
MAGLQRS VSFRRQGSSGLVWDDKL+S ELN +N+DPK A + NLN RTTPP IQR+RSNG YR GKVSPAI+PPSPKLSACGFC+AF KTGEKGR AK AKHRSR
Sbjct: 1 MAGLQRSEVSFRRQGSSGLVWDDKLLSGELN--KNEDPKGAHGGDLNLNLNVRTTPP----IQRSRSNGGYRTGKVSPAIEPPSPKLSACGFCSAFGKTGEKGRRAKPRAKHRSR 109
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|V7AR05|V7AR05_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G154100g PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.855e-48 Identity = 93/114 (81.58%), Postives = 96/114 (84.21%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
MAGLQRSAVSFRRQGSSGL+WDDKLV AEL+NDQ DPKAAA A +NLNART PPP IQRTRSNG YR GKVSPAIDPPSPKLSACGFC AFSKTGEKGR K AK RSR
Sbjct: 1 MAGLQRSAVSFRRQGSSGLIWDDKLV-AELSNDQ--DPKAAAAA--ENLNARTPPPP---IQRTRSNGGYRTGKVSPAIDPPSPKLSACGFCAAFSKTGEKGRRQKPGAKQRSR 106
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445JRP6|A0A445JRP6_GLYSO (MAPK kinase substrate protein OS=Glycine soja OX=3848 GN=D0Y65_016752 PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 2.997e-48 Identity = 86/115 (74.78%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNNDQNQDPKAAATAAAD-NLNARTTPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
MAGLQRS VSFRRQGSSGLVWDDKL+S ELN +N+DPK A + NLN RTTPP IQR+RSNG YR GKVSPAI+PPSPKLSACGFC+AF KTGEKGR AK AKHRSR
Sbjct: 1 MAGLQRSEVSFRRQGSSGLVWDDKLLSGELN--KNEDPKGAHGGDLNLNLNVRTTPP----IQRSRSNGGYRTGKVSPAIEPPSPKLSACGFCSAFGKTGEKGRRAKPRAKHRSR 109
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445JHY3|A0A445JHY3_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_021183 PE=4 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.077e-45 Identity = 81/115 (70.43%), Postives = 88/115 (76.52%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNN-DQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
M GLQRS VSFRRQGSSGLVWDDKL+S ELN + N+D K + NL RTTPP TTIQR+RSNG YR GKVSPAI+PPSPKLSACGFC+AF KT EKGR AKHRSR
Sbjct: 1 MDGLQRSEVSFRRQGSSGLVWDDKLLSGELNKVNNNEDQKGGGSGGDLNLKVRTTPP-NTTIQRSRSNGGYRTGKVSPAIEPPSPKLSACGFCSAFGKTREKGR-----AKHRSR 109
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|I1KVC4|I1KVC4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100783765 PE=4 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.077e-45 Identity = 81/115 (70.43%), Postives = 88/115 (76.52%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNN-DQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRSR 113
M GLQRS VSFRRQGSSGLVWDDKL+S ELN + N+D K + NL RTTPP TTIQR+RSNG YR GKVSPAI+PPSPKLSACGFC+AF KT EKGR AKHRSR
Sbjct: 1 MDGLQRSEVSFRRQGSSGLVWDDKLLSGELNKVNNNEDQKGGGSGGDLNLKVRTTPP-NTTIQRSRSNGGYRTGKVSPAIEPPSPKLSACGFCSAFGKTREKGR-----AKHRSR 109
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371HNR2|A0A371HNR2_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_11873 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.639e-40 Identity = 75/114 (65.79%), Postives = 84/114 (73.68%), Query Frame = 0
Query: 1 MAGLQRSAVSFRRQGSSGLVWDDKLVSAELNN-DQNQDPKAAATAAADNLNARTTPPPTTTIQRTRSNG-YRMGKVSPAIDPPSPKLSACGFCTAFSKTGEKGRPAKTSAKHRS 112
MAGLQRS VSFRRQGSSGLVWDDKL+S ELN ++ Q + +LNART P T I R+RSNG YR GKVSPAI+PPSPKLS CGFC+ F KTG+KGR AK KHRS
Sbjct: 1 MAGLQRSEVSFRRQGSSGLVWDDKLLSGELNKANKEQQQQQGHQDQKGDLNARTAP---TNIPRSRSNGGYRTGKVSPAIEPPSPKLSGCGFCSPFGKTGDKGRRAKPGVKHRS 111 The following BLAST results are available for this feature:
BLAST of rna-XM_014660413.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 2
BLAST of rna-XM_014660413.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 5
BLAST of rna-XM_014660413.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014660413.2_VrVC1973A-SNU_v1 ID=rna-XM_014660413.2_VrVC1973A-SNU_v1; Name=rna-XM_014660413.2; organism=Vigna radiata; type=mRNA; length=342bpback to top protein sequence of rna-XM_014660413.2_VrVC1973A-SNU_v1 >rna-XM_014660413.2_VrVC1973A-SNU_v1 ID=rna-XM_014660413.2_VrVC1973A-SNU_v1; Name=rna-XM_014660413.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=113bpback to top mRNA from alignment at chr09:650079..651117- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014660413.2_VrVC1973A-SNU_v1 ID=rna-XM_014660413.2_VrVC1973A-SNU_v1; Name=rna-XM_014660413.2; organism=Vigna radiata; type=mRNA; length=1039bp; location=Sequence derived from: chr09:650079..651117- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr09:650079..651117- >rna-XM_014660413.2_VrVC1973A-SNU_v1 ID=rna-XM_014660413.2_VrVC1973A-SNU_v1; Name=rna-XM_014660413.2; organism=Vigna radiata; type=CDS; length=342bp; location=Sequence derived from: chr09:650079..651117- (Vigna radiataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|