rna-XM_014668132.1
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Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014668132.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SRN4|GIR2_ARATH (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.516e-24 Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query: 1 MSKRAR-SPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEA-----EETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 94
MS+R + P+LE+ LNLSPP + +S S S + S+++S SSCVS E E +M+LVGCPRCLMYVMLS+ DPKCPKCKSTVLLDFL
Sbjct: 1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTS-------PSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFL 93
BLAST of rna-XM_014668132.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FNI1|GIR1_ARATH (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.242e-22 Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0
Query: 6 RSPRLEVSLNLSPPRAAS-------SVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLN 95
RSP+LE+ LNLSPP ++ S S++ + SS + E S + ET +M+LVGCPRCLMYVMLSE DPKCPKCKSTVLLDFL+
Sbjct: 4 RSPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH 100
BLAST of rna-XM_014668132.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FMS4|SIED1_ARATH (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.147e-10 Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 59 RAMLLVGCPRCLMYVMLS-EVDPKCPKCKSTVLLDFLNNEENNK 101
++M++VGCP C+MY++ S E DP+CP+C S VLLDFL + K
Sbjct: 47 KSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKK 90
BLAST of rna-XM_014668132.1 vs. Araport11
Match: AT3G11600.1 (| E3 ubiquitin-protein ligase | Chr3:3667337-3667690 FORWARD LENGTH=117 | 201606) HSP 1 Score: 91.2781 bits (225), Expect = 4.621e-25 Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query: 1 MSKRAR-SPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEA-----EETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 94
MS+R + P+LE+ LNLSPP + +S S S + S+++S SSCVS E E +M+LVGCPRCLMYVMLS+ DPKCPKCKSTVLLDFL
Sbjct: 1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTS-------PSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFL 93
BLAST of rna-XM_014668132.1 vs. Araport11
Match: AT5G06270.2 (| hypothetical protein | Chr5:1912895-1913263 FORWARD LENGTH=122 | 201606) HSP 1 Score: 85.8853 bits (211), Expect = 6.387e-23 Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0
Query: 6 RSPRLEVSLNLSPPRAAS-------SVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLN 95
RSP+LE+ LNLSPP ++ S S++ + SS + E S + ET +M+LVGCPRCLMYVMLSE DPKCPKCKSTVLLDFL+
Sbjct: 4 RSPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH 100
BLAST of rna-XM_014668132.1 vs. Araport11
Match: AT5G06270.1 (| hypothetical protein | Chr5:1912895-1913263 FORWARD LENGTH=122 | 201606) HSP 1 Score: 85.8853 bits (211), Expect = 6.387e-23 Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0
Query: 6 RSPRLEVSLNLSPPRAAS-------SVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLN 95
RSP+LE+ LNLSPP ++ S S++ + SS + E S + ET +M+LVGCPRCLMYVMLSE DPKCPKCKSTVLLDFL+
Sbjct: 4 RSPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH 100
BLAST of rna-XM_014668132.1 vs. Araport11
Match: AT5G22270.1 (| hypothetical protein | Chr5:7372487-7372768 REVERSE LENGTH=93 | 201606) HSP 1 Score: 55.8398 bits (133), Expect = 2.196e-11 Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 59 RAMLLVGCPRCLMYVMLS-EVDPKCPKCKSTVLLDFLNNEENNK 101
++M++VGCP C+MY++ S E DP+CP+C S VLLDFL + K
Sbjct: 47 KSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKK 90
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VZ34|A0A1S3VZ34_VIGRR (uncharacterized protein LOC106779913 OS=Vigna radiata var. radiata OX=3916 GN=LOC106779913 PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.443e-65 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH
Sbjct: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SBW0|A0A0S3SBW0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G159200 PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.470e-65 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSS+SSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH
Sbjct: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V640|A0A0L9V640_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g133300 PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.470e-65 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSS+SSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH
Sbjct: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6LH76|A0A4D6LH76_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2549 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 4.488e-63 Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSV-SSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
MSKRARSPRLEV+LNLSPPRAA+SV SSSDLSSDSSS+SSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH
Sbjct: 1 MSKRARSPRLEVTLNLSPPRAATSVVSSSDLSSDSSSTSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 105
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445HN07|A0A445HN07_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_033813 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.328e-45 Identity = 83/104 (79.81%), Postives = 89/104 (85.58%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQ--VSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKK 102
MSKRARSPRLE+ LNLSPPRAA++ S S+ SS+ VSVQSLESSCVS EAEETRAMLLVGCPRCL+YVMLSEVDPKCPKCKSTVLLDFLNNEENN K
Sbjct: 1 MSKRARSPRLELRLNLSPPRAAATSIISSSELSSTESSTLSPVSVQSLESSCVSSEAEETRAMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENNTK 104
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|I1LRJ7|I1LRJ7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102667525 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.328e-45 Identity = 83/104 (79.81%), Postives = 89/104 (85.58%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQ--VSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKK 102
MSKRARSPRLE+ LNLSPPRAA++ S S+ SS+ VSVQSLESSCVS EAEETRAMLLVGCPRCL+YVMLSEVDPKCPKCKSTVLLDFLNNEENN K
Sbjct: 1 MSKRARSPRLELRLNLSPPRAAATSIISSSELSSTESSTLSPVSVQSLESSCVSSEAEETRAMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENNTK 104
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|I1LKN5|I1LKN5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100775986 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.355e-45 Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASS--VSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 94
MSKR RSPRLE+ LNLSPPRAA++ +SSS+LS SS SS VSVQSLESSCVS EAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL
Sbjct: 1 MSKRVRSPRLELRLNLSPPRAAATSIISSSELSPTESSMSSPVSVQSLESSCVSSEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 96
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QF51|A0A0B2QF51_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030106 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.355e-45 Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASS--VSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 94
MSKR RSPRLE+ LNLSPPRAA++ +SSS+LS SS SS VSVQSLESSCVS EAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL
Sbjct: 1 MSKRVRSPRLELRLNLSPPRAAATSIISSSELSPTESSMSSPVSVQSLESSCVSSEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 96
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|C6TAX6|C6TAX6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.030e-44 Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASS--VSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 94
MSKR RSPRLE+ LNLSPPRAA++ +SSS+LS SS SS VSVQSLESSCVS E EETRAML VGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL
Sbjct: 1 MSKRVRSPRLELRLNLSPPRAAATSIISSSELSPTESSMSSPVSVQSLESSCVSSEGEETRAMLFVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL 96
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Match: tr|V7AGR8|V7AGR8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G097300g PE=4 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.144e-39 Identity = 84/104 (80.77%), Postives = 88/104 (84.62%), Query Frame = 0
Query: 1 MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNKKIH 104
M KRARSPRLEV L+LSPPR S S S SS+SSQVSVQSLESSCVSCE EETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFL N+EN+KK H
Sbjct: 1 MKKRARSPRLEVRLSLSPPRTPVSSSDP---SSESSTSSQVSVQSLESSCVSCEVEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101 The following BLAST results are available for this feature:
BLAST of rna-XM_014668132.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 3
BLAST of rna-XM_014668132.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 4
BLAST of rna-XM_014668132.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014668132.1_VrVC1973A-SNU_v1 ID=rna-XM_014668132.1_VrVC1973A-SNU_v1; Name=rna-XM_014668132.1; organism=Vigna radiata; type=mRNA; length=315bpback to top protein sequence of rna-XM_014668132.1_VrVC1973A-SNU_v1 >rna-XM_014668132.1_VrVC1973A-SNU_v1 ID=rna-XM_014668132.1_VrVC1973A-SNU_v1; Name=rna-XM_014668132.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=104bpback to top mRNA from alignment at chr02:8972087..8972401- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014668132.1_VrVC1973A-SNU_v1 ID=rna-XM_014668132.1_VrVC1973A-SNU_v1; Name=rna-XM_014668132.1; organism=Vigna radiata; type=mRNA; length=315bp; location=Sequence derived from: chr02:8972087..8972401- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr02:8972087..8972401- >rna-XM_014668132.1_VrVC1973A-SNU_v1 ID=rna-XM_014668132.1_VrVC1973A-SNU_v1; Name=rna-XM_014668132.1; organism=Vigna radiata; type=CDS; length=315bp; location=Sequence derived from: chr02:8972087..8972401- (Vigna radiataback to top |