rna-XM_022779740.1
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_022779740.1 vs. Araport11
Match: AT5G18250.1 (| transmembrane protein | Chr5:6033797-6035216 FORWARD LENGTH=133 | 201606) HSP 1 Score: 176.407 bits (446), Expect = 8.940e-58 Identity = 84/120 (70.00%), Postives = 92/120 (76.67%), Query Frame = 0 Query: 19 NIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKS 138 IRCHHCAGPL+ +ETS W V P IRDSFSMIGSAVGGTASAF GFN MPIV++ IKGPMWLHF +GAPPVIV SSACAGL GG +PA AQL SSSY AA S P K+ +QKS Sbjct: 9 EIRCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGPMWLHFLVGAPPVIVLSSACAGLAGGTVPALAQLASSSYRAAVHSSQPPQAQKDNKMQKS 128
BLAST of rna-XM_022779740.1 vs. Araport11
Match: AT3G04040.1 (| transmembrane protein | Chr3:1047754-1049026 FORWARD LENGTH=138 | 201606) HSP 1 Score: 172.94 bits (437), Expect = 2.084e-56 Identity = 84/127 (66.14%), Postives = 103/127 (81.10%), Query Frame = 0 Query: 10 TSKLSNSTQNI--RCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNEN 134 ++ +++S + I RCHHCAGPL+ +ET+ W V+P IRDSFSMIGSAVGGTASAF GF+ VMPIV++ IKGPMWLHF +GAPPVIV SSACAGL GGA+PA AQL SSSYHAA S + PP +++N Sbjct: 2 SATMADSGKEIGSRCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHVMPIVRKWIKGPMWLHFLVGAPPVIVVSSACAGLAGGAVPALAQLASSSYHAAVHS-SQPPQGQDKN 127
BLAST of rna-XM_022779740.1 vs. Araport11
Match: AT2G41945.1 (| transmembrane protein | Chr2:17511071-17512898 REVERSE LENGTH=158 | 201606) HSP 1 Score: 69.3218 bits (168), Expect = 1.749e-15 Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 0 Query: 21 RCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL 112 RC C L+ E W ++P++ D+ ++ GS +GG SA + FN +P +Q R G L F +G P ++V+S A G A+P AQL Sbjct: 30 RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQL 121
BLAST of rna-XM_022779740.1 vs. Araport11
Match: AT2G41945.2 (| transmembrane protein | Chr2:17509933-17512898 REVERSE LENGTH=166 | 201606) HSP 1 Score: 68.9366 bits (167), Expect = 2.365e-15 Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0 Query: 21 RCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLV 113 RC C L+ E W ++P++ D+ ++ GS +GG SA + FN +P +Q R G L F +G P ++V+S A G A+P AQL Sbjct: 30 RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLT 122
BLAST of rna-XM_022779740.1 vs. Araport11
Match: AT2G41945.3 (| transmembrane protein | Chr2:17509933-17512898 REVERSE LENGTH=204 | 201606) HSP 1 Score: 59.3066 bits (142), Expect = 2.228e-11 Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 0 Query: 21 RCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAA 109 RC C L+ E W ++P++ D+ ++ GS +GG SA + FN +P +Q R G L F +G P ++V+S A G ++ AA Sbjct: 30 RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAF-GESLQAA 117
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0EWD2|A0A3Q0EWD2_VIGRR (uncharacterized protein LOC106758629 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758629 PE=4 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 1.851e-99 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 Query: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK Sbjct: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0EUR3|A0A3Q0EUR3_VIGRR (uncharacterized protein LOC106758629 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758629 PE=4 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 3.063e-97 Identity = 140/144 (97.22%), Postives = 140/144 (97.22%), Query Frame = 0 Query: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLV----MPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLV MPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK Sbjct: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVSNAVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 144
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SGZ7|A0A0S3SGZ7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G073600 PE=4 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 6.572e-97 Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0 Query: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 MQH DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLW VSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPS+NENIQKSIK Sbjct: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSENENIQKSIK 140
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|V7BYF3|V7BYF3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G124000g PE=4 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 4.682e-84 Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 0 Query: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 MQH DN ME SKLSNS QNIRCHHCAGPLSNRMETS W VSPLIRDSFSMIGSAVGGT SAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQLVSSSYHAAY PPPSK+E IQKSIK Sbjct: 1 MQHSDNEMEASKLSNSIQNIRCHHCAGPLSNRMETSHWTVSPLIRDSFSMIGSAVGGTTSAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYHAAY-----PPPSKDEYIQKSIK 135
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|C6TB57|C6TB57_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 3.117e-78 Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = 0 Query: 5 DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 ++ ME SKLS+S QN+RCHHCAGPLS METS W VSPLIRDSFSMIGSAVGG ASAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQLVSS YHAAY PT PPPSK+ENIQ+S K Sbjct: 3 NSAMEASKLSSSDQNVRCHHCAGPLSKDMETSHWTVSPLIRDSFSMIGSAVGGVASAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSFYHAAYFFPTSPPPSKDENIQRSRK 138
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RMW4|A0A151RMW4_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034640 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 5.909e-73 Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0 Query: 19 NIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 +IRCHHCAGPLSN+MET+ W VSPLIRDSFSMIGSAVGGTASAFYGFNLVMP+VQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQLVSSSY+AAYS+ T+PPPSK+ NIQKS K Sbjct: 14 DIRCHHCAGPLSNQMETTHWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPVVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYNAAYSTSTLPPPSKDGNIQKSRK 135
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5N6RG49|A0A5N6RG49_9ROSI (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016430 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 7.053e-67 Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0 Query: 14 SNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKS 138 S + N+RCHHCAGPLS METS W V PLIRDSFSMIGSAVGGT SAFYGFN VMPIV+RR+KGPMWLHF IGAPPVIVFSSACAGL GGA+PA AQL SSSYHAA +SP++PPPS++E + KS Sbjct: 4 SKPSINMRCHHCAGPLSKEMETSRWTVPPLIRDSFSMIGSAVGGTTSAFYGFNHVMPIVRRRVKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPALAQLASSSYHAAITSPSLPPPSQDEKMHKS 128
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|I1M4D1|I1M4D1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100787081 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 7.205e-67 Identity = 117/136 (86.03%), Postives = 124/136 (91.18%), Query Frame = 0 Query: 5 DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 ++ ME SKLS+S QN+RCHHCAGPLS METS W VSPLIRDSFSMIGSAVGG ASAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQLVSSSYHAAYSSPT PPPSK+ENIQ+S K Sbjct: 3 NSAMEASKLSSSDQNVRCHHCAGPLSKDMETSHWTVSPLIRDSFSMIGSAVGGVASAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYHAAYSSPTSPPPSKDENIQRSRK 138
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2RM07|A0A0B2RM07_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_032355 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 7.205e-67 Identity = 117/136 (86.03%), Postives = 124/136 (91.18%), Query Frame = 0 Query: 5 DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 ++ ME SKLS+S QN+RCHHCAGPLS METS W VSPLIRDSFSMIGSAVGG ASAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQLVSSSYHAAYSSPT PPPSK+ENIQ+S K Sbjct: 3 NSAMEASKLSSSDQNVRCHHCAGPLSKDMETSHWTVSPLIRDSFSMIGSAVGGVASAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYHAAYSSPTSPPPSKDENIQRSRK 138
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Match: tr|C6SWA2|C6SWA2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 3.455e-66 Identity = 117/140 (83.57%), Postives = 122/140 (87.14%), Query Frame = 0 Query: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140 MQH + ME SK SNS QN+RCHHCAGPLS METS W VSPLIRDSFSMIGSAVGG AS FYGFNLVMPIVQRRIKGPMWLHF IGAPPVIV SSACAGL GGA+PAAAQLVSSSYHAAYSSP PPPSK+ENIQ+S K Sbjct: 1 MQH--SAMEASKFSNSDQNVRCHHCAGPLSKDMETSHWTVSPLIRDSFSMIGSAVGGVASTFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVLSSACAGLAGGAVPAAAQLVSSSYHAAYSSPISPPPSKDENIQRSRK 138 The following BLAST results are available for this feature:
BLAST of rna-XM_022779740.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_022779740.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 5
BLAST of rna-XM_022779740.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_022779740.1_VrVC1973A-SNU_v1 ID=rna-XM_022779740.1_VrVC1973A-SNU_v1; Name=rna-XM_022779740.1; organism=Vigna radiata; type=mRNA; length=423bpback to top protein sequence of rna-XM_022779740.1_VrVC1973A-SNU_v1 >rna-XM_022779740.1_VrVC1973A-SNU_v1 ID=rna-XM_022779740.1_VrVC1973A-SNU_v1; Name=rna-XM_022779740.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=140bpback to top mRNA from alignment at chr04:7195140..7198387- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_022779740.1_VrVC1973A-SNU_v1 ID=rna-XM_022779740.1_VrVC1973A-SNU_v1; Name=rna-XM_022779740.1; organism=Vigna radiata; type=mRNA; length=3248bp; location=Sequence derived from: chr04:7195140..7198387- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr04:7195140..7198387- >rna-XM_022779740.1_VrVC1973A-SNU_v1 ID=rna-XM_022779740.1_VrVC1973A-SNU_v1; Name=rna-XM_022779740.1; organism=Vigna radiata; type=CDS; length=423bp; location=Sequence derived from: chr04:7195140..7198387- (Vigna radiataback to top |