rna-XM_022782546.1

Transcript Overview


Name	rna-XM_022782546.1
Unique Name	rna-XM_022782546.1_VrVC1973A-SNU_v1
Type	mRNA
Organism	Vigna radiata (Mung bean, green gram)
Sequence length	804
Product	uncharacterized LOC106763765, transcript variant X4

References

External references for this mRNA


Database	Accession
GeneID	106763765
Genbank	XM_022782546.1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr06	chromosome	chr06:35230213..35234244 +	Vigna radiata cv. VC1973A genome v6.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna radiata cv. VC1973A genome v6.0	2023-06-13
InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL	2023-06-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
asvrvL158	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvrvL652	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anvrvL0720	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL0861	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ccvrvL0959	Cajanus cajan Asha genome v1.0	Cajanus cajan
pvvrvL046	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
psvrvL522	Pisum sativum Cameor genome v1a	Pisum sativum
psvrvL525	Pisum sativum Cameor genome v1a	Pisum sativum
pvvrvL763	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tifvrvL284	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvrvL363	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vrvvrvL163	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vfhvrvL296	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvrvL377	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvssR563	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvssR591	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvzwsR467	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvzwsR501	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuaR405	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvvuR448	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvvuaR431	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvvuR459	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canvrvL288	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvrvL408	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvrvL456	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvrvL604	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvrvL287		Cicer arietinum
carvrvL421		Cicer arietinum
ccavrvL457	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL589	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vrvvumR465	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvumR473	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvvaR531	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR564	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvstR459	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR467	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvrvL238	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvrvL302	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvrvL039	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvrvL711	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vrvvunR422	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vrvvunR433	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC106763765	gene-LOC106763765_VrVC1973A-SNU_v1	Vigna radiata	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_022782546.1-1	exon-XM_022782546.1-1_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_022782546.1-2	exon-XM_022782546.1-2_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_022782546.1-3	exon-XM_022782546.1-3_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_022782546.1-4	exon-XM_022782546.1-4_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_022782546.1-5	exon-XM_022782546.1-5_VrVC1973A-SNU_v1	Vigna radiata	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_022638267.1	cds-XP_022638267.1_VrVC1973A-SNU_v1	Vigna radiata	CDS
cds-XP_022638267.1	cds-XP_022638267.1_VrVC1973A-SNU_v1_2	Vigna radiata	CDS
cds-XP_022638267.1	cds-XP_022638267.1_VrVC1973A-SNU_v1_3	Vigna radiata	CDS
cds-XP_022638267.1	cds-XP_022638267.1_VrVC1973A-SNU_v1_4	Vigna radiata	CDS
cds-XP_022638267.1	cds-XP_022638267.1_VrVC1973A-SNU_v1_5	Vigna radiata	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_022782546.1_VrVC1973A-SNU_v1	rna-XM_022782546.1_VrVC1973A-SNU_v1	Vigna radiata	polypeptide
rna-XM_022782546.1_VrVC1973A-SNU_v1	rna-XM_022782546.1_VrVC1973A-SNU_v1-protein	Vigna radiata	polypeptide

Homology

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8L8T7|COR27_ARATH (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.234e-20
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 0

Query:   82 MAAEWTDEKHSMYIKSIEASFVNQLYDS-----KQMRTSFPCK-GTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRIN-----HCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGI---PSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            M  EWT+EKHS+Y+KS+EASFV+QLY+S     K    S   + G+   P+    QFKVL  G WQKIN ++  P+  RIN     + H+   +PWI+HY+   K +  V    +  V +SS       +KGI    S S    L      H  +   + E+S QNFV++ +KG  +N  SK  +   ++++   DQ
Sbjct:   44 METEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQE--QFKVLHDGFWQKINVKQ--PE-HRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN-----GKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKG--ENGSSKKMKTVMMSESSSTDQ 228

[Close]

BLAST of rna-XM_022782546.1 vs. Araport11
Match: AT5G42900.3 (| cold regulated protein 27 | Chr5:17198366-17199712 REVERSE LENGTH=245 | 201606)

HSP 1 Score: 92.8189 bits (229), Expect = 3.334e-22
Identity = 73/196 (37.24%), Postives = 105/196 (53.57%), Query Frame = 0

Query:   82 MAAEWTDEKHSMYIKSIEASFVNQLYDS-----KQMRTSFPCK-GTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRIN-----HCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGI-PSGSG-HLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            M  EWT+EKHS+Y+KS+EASFV+QLY+S     K    S   + G+   P+    QFKVL  G WQKIN ++  P+  RIN     + H+   +PWI+HY+   K +  V    +  V +SS       +KGI  SGS   L    S     D +S   E+S QNFV++ +KG  +N  SK  +   ++++   DQ
Sbjct:   44 METEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQE--QFKVLHDGFWQKINVKQ--PE-HRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN-----GKKGICSSGSASSLKQLSSHSRDHDQISVGEEVSDQNFVNEGIKG--ENGSSKKMKTVMMSESSSTDQ 227

[Close]

BLAST of rna-XM_022782546.1 vs. Araport11
Match: AT5G42900.2 (| cold regulated protein 27 | Chr5:17198366-17199712 REVERSE LENGTH=246 | 201606)

HSP 1 Score: 90.5077 bits (223), Expect = 2.285e-21
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 0

Query:   82 MAAEWTDEKHSMYIKSIEASFVNQLYDS-----KQMRTSFPCK-GTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRIN-----HCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGI---PSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            M  EWT+EKHS+Y+KS+EASFV+QLY+S     K    S   + G+   P+    QFKVL  G WQKIN ++  P+  RIN     + H+   +PWI+HY+   K +  V    +  V +SS       +KGI    S S    L      H  +   + E+S QNFV++ +KG  +N  SK  +   ++++   DQ
Sbjct:   44 METEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQE--QFKVLHDGFWQKINVKQ--PE-HRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN-----GKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKG--ENGSSKKMKTVMMSESSSTDQ 228

[Close]

BLAST of rna-XM_022782546.1 vs. Araport11
Match: AT5G42900.1 (| cold regulated protein 27 | Chr5:17198366-17199712 REVERSE LENGTH=246 | 201606)

HSP 1 Score: 90.5077 bits (223), Expect = 2.285e-21
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 0

Query:   82 MAAEWTDEKHSMYIKSIEASFVNQLYDS-----KQMRTSFPCK-GTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRIN-----HCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGI---PSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            M  EWT+EKHS+Y+KS+EASFV+QLY+S     K    S   + G+   P+    QFKVL  G WQKIN ++  P+  RIN     + H+   +PWI+HY+   K +  V    +  V +SS       +KGI    S S    L      H  +   + E+S QNFV++ +KG  +N  SK  +   ++++   DQ
Sbjct:   44 METEWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQE--QFKVLHDGFWQKINVKQ--PE-HRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN-----GKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKG--ENGSSKKMKTVMMSESSSTDQ 228

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F776|A0A3Q0F776_VIGRR (uncharacterized protein LOC106763765 isoform X4 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763765 PE=4 SV=1)

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0

Query:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQGAK 267
            MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQGAK
Sbjct:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQGAK 267

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F446|A0A3Q0F446_VIGRR (uncharacterized protein LOC106763765 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763765 PE=4 SV=1)

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 267/270 (98.89%), Postives = 267/270 (98.89%), Query Frame = 0

Query:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDND---QGAK 267
            MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDND   QGAK
Sbjct:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQNFQGAK 270

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UBS0|A0A1S3UBS0_VIGRR (uncharacterized protein LOC106763765 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763765 PE=4 SV=2)

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0

Query:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ
Sbjct:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F2M2|A0A3Q0F2M2_VIGRR (uncharacterized protein LOC106763765 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763765 PE=4 SV=1)

HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0

Query:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ
Sbjct:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V2R0|A0A0L9V2R0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g270800 PE=4 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 1.197e-152
Identity = 254/269 (94.42%), Postives = 258/269 (95.91%), Query Frame = 0

Query:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLN----PIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQG 265
            MTRVKAQTTVFPFCSPS PLSLLLFIHFLHLPIPIANKNIT+ HTYKMNNNFRVTRTPEETPTTSSTFLN    PIQGIREI+STMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMR SFPCKGTSCDPATTSGQFKVLRGGCWQKINFER  PQTSRIN CHDLTENPWIQHYRSSSKQR+TVAPSLQESVSTS+KV DLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQG
Sbjct:    1 MTRVKAQTTVFPFCSPSLPLSLLLFIHFLHLPIPIANKNITHKHTYKMNNNFRVTRTPEETPTTSSTFLNSHNNPIQGIREIDSTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRASFPCKGTSCDPATTSGQFKVLRGGCWQKINFER--PQTSRINQCHDLTENPWIQHYRSSSKQRNTVAPSLQESVSTSNKVVDLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQG 267

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RQ01|A0A0S3RQ01_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G270300 PE=4 SV=1)

HSP 1 Score: 432.95 bits (1112), Expect = 3.249e-151
Identity = 253/268 (94.40%), Postives = 257/268 (95.90%), Query Frame = 0

Query:    1 MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNNNFRVTRTPEETPTTSSTFLN----PIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            MTRVKAQTTVFPFCSPS PLSLLLFIHFLHLPIPIANKNIT+ HTYKMNNNFRVTRTPEETPTTSSTFLN    PIQGIREI+STMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMR SFPCKGTSCDPATTSGQFKVLRGGCWQKINFER  PQTSRIN CHDLTENPWIQHYRSSSKQR+TVAPSLQESVSTS+KV DLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ
Sbjct:    1 MTRVKAQTTVFPFCSPSLPLSLLLFIHFLHLPIPIANKNITHKHTYKMNNNFRVTRTPEETPTTSSTFLNSHNNPIQGIREIDSTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRASFPCKGTSCDPATTSGQFKVLRGGCWQKINFER--PQTSRINQCHDLTENPWIQHYRSSSKQRNTVAPSLQESVSTSNKVVDLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 266

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MDB1|A0A4D6MDB1_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g245 PE=4 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 8.383e-128
Identity = 201/221 (90.95%), Postives = 202/221 (91.40%), Query Frame = 0

Query:   48 MNNNFRVTRTPEETPTTSSTFLN----PIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLTDAKDNDQ 264
            M NNFRVT TPEE PTTSSTFLN    PIQGIREIE TMAAEWTDEKHSMYIKSIEASFVNQLYDSKQM+ SF  KGTS DPATTSGQFKVLRGGCWQKINFERVNPQTSR N CHDL ENPWIQHYRSSSKQRSTVAPSLQESVSTSSKV DLGQRKG PSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKK K KRQRSLTDAKDNDQ
Sbjct:    1 MKNNFRVTTTPEEAPTTSSTFLNSINNPIQGIREIEPTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMKASFSLKGTSGDPATTSGQFKVLRGGCWQKINFERVNPQTSRSNQCHDLAENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVVDLGQRKGTPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKCKGKRQRSLTDAKDNDQ 221

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BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|V7CVB3|V7CVB3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G022200g PE=4 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 8.976e-124
Identity = 199/228 (87.28%), Postives = 203/228 (89.04%), Query Frame = 0

Query:   48 MNNNFRVTRTPEE----TPTTSSTFL-----NPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSS--DTEMSGQNFVDDEVKGKKQNKKSKVKRQRSL-TDAKDND 263
            MNNNFRVT T EE     PTTSSTFL     NPIQGIREI+STMAAEWTDEKHSMYIKSIEASFVNQLYDSKQM+ SF CKGTSCDPATTSGQFKVLRGGCWQKINFER+NPQTSRIN  HDL ENPWIQHYRSSSKQRSTV PSLQESV  SSKV DLGQRKG PSGSGHLHLCESRVCHKDMLSS  DTEMSGQNFVDDEVKGKKQNKKSKVKRQRSL TDAKDN+
Sbjct:    1 MNNNFRVTTTTEEQQQQAPTTSSTFLTSHNNNPIQGIREIDSTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMKASFSCKGTSCDPATTSGQFKVLRGGCWQKINFERLNPQTSRINQRHDLGENPWIQHYRSSSKQRSTVVPSLQESVHASSKVVDLGQRKGTPSGSGHLHLCESRVCHKDMLSSDTDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLITDAKDNN 228

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BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|V7CRN3|V7CRN3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G022200g PE=4 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 2.509e-123
Identity = 199/228 (87.28%), Postives = 203/228 (89.04%), Query Frame = 0

Query:   48 MNNNFRVTRTPEE----TPTTSSTFL-----NPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSS--DTEMSGQNFVDDEVKGKKQNKKSKVKRQRSL-TDAKDND 263
            MNNNFRVT T EE     PTTSSTFL     NPIQGIREI+STMAAEWTDEKHSMYIKSIEASFVNQLYDSKQM+ SF CKGTSCDPATTSGQFKVLRGGCWQKINFER+NPQTSRIN  HDL ENPWIQHYRSSSKQRSTV PSLQESV  SSKV DLGQRKG PSGSGHLHLCESRVCHKDMLSS  DTEMSGQNFVDDEVKGKKQNKKSKVKRQRSL TDAKDN+
Sbjct:    1 MNNNFRVTTTTEEQQQQAPTTSSTFLTSHNNNPIQGIREIDSTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMKASFSCKGTSCDPATTSGQFKVLRGGCWQKINFERLNPQTSRINQRHDLGENPWIQHYRSSSKQRSTVVPSLQESVHASSKVVDLGQRKGTPSGSGHLHLCESRVCHKDMLSSDTDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSLITDAKDNN 228

[Close]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0FHV6|A0A0R0FHV6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100814610 PE=4 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 9.591e-114
Identity = 180/221 (81.45%), Postives = 191/221 (86.43%), Query Frame = 0

Query:   48 MNNNFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNPQTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQRKGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKVKRQRSL-TDAKDNDQGAK 267
            M NNFR+ RT E+T  +S     P QGIRE ESTMA EWTDEKHSMYIKSIEASFVNQLYDSKQM+TS+       DPATTSGQFKVLRGGCWQKINFERVNPQTSRIN CHDLTENPWIQHYRSSSKQRS    SLQESV+T+SKV DLGQRKG+PSGSGHLHLCESRVCHKDML SDTEMS QNFVD+EVKGKKQNKKSKVKRQRSL +DA+DNDQG K
Sbjct:    1 MKNNFRLIRT-EKTRISS-----PTQGIRETESTMAPEWTDEKHSMYIKSIEASFVNQLYDSKQMKTSY-------DPATTSGQFKVLRGGCWQKINFERVNPQTSRINQCHDLTENPWIQHYRSSSKQRSIAVSSLQESVTTTSKVVDLGQRKGVPSGSGHLHLCESRVCHKDMLYSDTEMSDQNFVDEEVKGKKQNKKSKVKRQRSLISDAQDNDQGTK 208

The following BLAST results are available for this feature:

BLAST of rna-XM_022782546.1 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_022782546.1 vs. Araport11
BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL

BLAST of rna-XM_022782546.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
sp\|Q8L8T7\|COR27_ARATH	2.234e-20	35.53	Cold-regulated protein 27 OS=Arabidopsis thaliana ...	[more]

BLAST of rna-XM_022782546.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G42900.3	3.334e-22	37.24	\| cold regulated protein 27 \| Chr5:17198366-171997...	[more]
AT5G42900.2	2.285e-21	35.53	\| cold regulated protein 27 \| Chr5:17198366-171997...	[more]
AT5G42900.1	2.285e-21	35.53	\| cold regulated protein 27 \| Chr5:17198366-171997...	[more]

BLAST of rna-XM_022782546.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A3Q0F776\|A0A3Q0F776_VIGRR	0.000e+0	100.00	uncharacterized protein LOC106763765 isoform X4 OS...	[more]
tr\|A0A3Q0F446\|A0A3Q0F446_VIGRR	0.000e+0	98.89	uncharacterized protein LOC106763765 isoform X3 OS...	[more]
tr\|A0A1S3UBS0\|A0A1S3UBS0_VIGRR	0.000e+0	100.00	uncharacterized protein LOC106763765 isoform X1 OS...	[more]
tr\|A0A3Q0F2M2\|A0A3Q0F2M2_VIGRR	0.000e+0	100.00	uncharacterized protein LOC106763765 isoform X2 OS...	[more]
tr\|A0A0L9V2R0\|A0A0L9V2R0_PHAAN	1.197e-152	94.42	Uncharacterized protein OS=Phaseolus angularis OX=...	[more]
tr\|A0A0S3RQ01\|A0A0S3RQ01_PHAAN	3.249e-151	94.40	Uncharacterized protein OS=Vigna angularis var. an...	[more]
tr\|A0A4D6MDB1\|A0A4D6MDB1_VIGUN	8.383e-128	90.95	Uncharacterized protein OS=Vigna unguiculata OX=39...	[more]
tr\|V7CVB3\|V7CVB3_PHAVU	8.976e-124	87.28	Uncharacterized protein OS=Phaseolus vulgaris OX=3...	[more]
tr\|V7CRN3\|V7CRN3_PHAVU	2.509e-123	87.28	Uncharacterized protein OS=Phaseolus vulgaris OX=3...	[more]
tr\|A0A0R0FHV6\|A0A0R0FHV6_SOYBN	9.591e-114	81.45	Uncharacterized protein OS=Glycine max OX=3847 GN=...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..201
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 77..264

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr06:35230213..35234244+
coding sequence from alignment at chr06:35230213..35234244+

mRNA sequence

>rna-XM_022782546.1_VrVC1973A-SNU_v1 ID=rna-XM_022782546.1_VrVC1973A-SNU_v1; Name=rna-XM_022782546.1; organism=Vigna radiata; type=mRNA; length=804bp
ATGACACGTGTAAAAGCGCAGACAACTGTATTCCCTTTTTGTTCACCATC
ACCGCCCCTTTCTCTCCTCTTATTCATTCATTTCCTTCACCTTCCAATTC
CCATTGCAAACAAAAATATCACATACATACATACCTATAAGATGAACAAC
AATTTCAGAGTAACAAGAACGCCAGAAGAAACTCCAACCACTTCTTCCAC
CTTCCTCAACCCGATTCAGGGCATTAGAGAGATAGAATCCACAATGGCTG
CAGAGTGGACAGATGAGAAACACAGCATGTATATCAAGTCTATAGAAGCA
TCTTTTGTTAATCAGTTATATGATTCTAAGCAAATGAGGACTTCCTTTCC
CTGCAAAGGAACTTCCTGTGACCCTGCTACCACTTCTGGCCAGTTCAAGG
TACTTCGTGGCGGGTGTTGGCAAAAAATCAATTTTGAAAGAGTGAATCCG
CAAACGAGTAGGATTAACCACTGTCATGATTTGACGGAAAATCCATGGAT
TCAGCACTATCGATCTTCAAGCAAACAGAGAAGCACAGTTGCTCCATCCC
TTCAAGAAAGTGTCAGTACCTCAAGCAAAGTTGCTGATTTAGGCCAAAGG
AAAGGAATTCCCTCTGGGTCAGGACATCTTCATTTGTGTGAATCTCGTGT
CTGCCATAAAGATATGCTTTCTAGTGACACAGAGATGTCAGGCCAGAACT
TTGTTGATGATGAAGTGAAAGGCAAAAAGCAGAATAAAAAAAGCAAAGTG
AAACGACAAAGATCTTTAACTGATGCAAAAGACAATGATCAGGGGGCAAA
ATAA

protein sequence of rna-XM_022782546.1_VrVC1973A-SNU_v1

>rna-XM_022782546.1_VrVC1973A-SNU_v1 ID=rna-XM_022782546.1_VrVC1973A-SNU_v1; Name=rna-XM_022782546.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=267bp
MTRVKAQTTVFPFCSPSPPLSLLLFIHFLHLPIPIANKNITYIHTYKMNN
NFRVTRTPEETPTTSSTFLNPIQGIREIESTMAAEWTDEKHSMYIKSIEA
SFVNQLYDSKQMRTSFPCKGTSCDPATTSGQFKVLRGGCWQKINFERVNP
QTSRINHCHDLTENPWIQHYRSSSKQRSTVAPSLQESVSTSSKVADLGQR
KGIPSGSGHLHLCESRVCHKDMLSSDTEMSGQNFVDDEVKGKKQNKKSKV
KRQRSLTDAKDNDQGAK

mRNA from alignment at chr06:35230213..35234244+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_022782546.1_VrVC1973A-SNU_v1 ID=rna-XM_022782546.1_VrVC1973A-SNU_v1; Name=rna-XM_022782546.1; organism=Vigna radiata; type=mRNA; length=4032bp; location=Sequence derived from: chr06:35230213..35234244+ (Vigna radiata
ACAATATAATAGAACTGTCGTTGATGTGAATGAGaattaatattatgaaa
attttgttataataagaTAAACAATGTGAGGAAGGAAAATAACAGATATT
TTGATGGGCAGATGAAAATATCTCCCATGCTAATGTAGCCTGACGGTGAC
GTGGCCATGGATTGGCCCCATGACACGTGTAAAAGCGCAGACAACTGTAT
TCCCTTTTTGTTCACCATCACCGCCCCTTTCTCTCCTCTTATTCATTCAT
TTCCTTCACCTTCCAATTCCCATTGCAAACAAAAATATCACATACATACA
TACCTATAAGATGAACAACAATTTCAGAGTAACAAGAACGCCAGAAGAAA
CTCCAACCACTTCTTCCACCTTCCTCAACCCGATTCAGGTATCTTCACTC
TTCGTTAACTTTcctttttactttcttaatttcttcttcttctgggGAAC
TCTTGCAGTATTCTCTAGGGTTACGGATGGGATGAAGGAtgctaactttt
tttttttttttttttggaaaaaagaaaatctgTTCACGCTTTGCTTGCTT
GATCTGCAATGGAGAATATTCTGATATTCGtaataactctttttttattt
tttctttcctttttacgAGGCGGAGATTTCATAATCTTCTTTATTTAAAT
CCATTAATGATTTAAAGTCTTCCAGATATTAAATGGGAGACTTTGGAGGT
ATTGGCTTTtggtaaaattattattattattattattattttcctgAAAT
TTAAGTGGTTGTAATTAAGTGAAGTTTGGGTTTCAACTTGCATTACGCAA
TTCATAAATAGATATCCATGTAAAGTTTGTATATTTAATGTATGATTAGA
CAGGAGCTTGGTTTCATGTTATGTTTGctttatgaatttaattaaataat
taggtgttttcaaaagataaatagGAAATCAATTGACGAACTTTGATTTT
AAGTAACTCTGTCTGAAATCTTGCTTAACGTTTTAATATTTGTGGAATTA
GAAACAACTAACtgcatataatataattattttgttctgaattaatttca
caaatattttctgACACAAAGTTGGTGTGACTTTACCAAAAAATTAAACG
GTGGAGTgagtttcttttcttaaaagcgaaagctttttttatttttattt
ttatatatttcataattttaaaaatctcatTCTCTtcgaaaataaattaa
agcacTAAATGTATAGAACTTtgttttcctttcctttccttTCAACTGAT
AGAAATTTGGTTTCtaaacatttttcttgttttaatttatttttatttga
aaattagtgGTATACTATCTATTCTGTTAACATGATTCTGGGGTTtgata
tgtatgtatgtatgtatcaGGGCATTAGAGAGATAGAATCCACAATGGCT
GCAGAGTGGACAGATGAGAAACACAGCATGTATATCAAGTCTATAGAAGC
ATCTTTTGTTAATCAGTTATATGATTCTAAGCAAATGAGGACTTCCTTTC
CCTGCAAAGGAACTTCCTGTGACCCTGCTACCACTTCTGGCCAGgtttcc
tttttaatttgttcTGCACTGACTTGTTTTAATatgaacaaaaattaaga
tatgGATTTGGTTGTTATCATGAATGTCATCACTATAAATCTCTAAATGC
AAAGATTTGTCAATCTGTAATTAACATAGACACGACTTTGAGTCTGTTAT
GGTAAAATCAAACATCAATTAGCTTATCATGAAGCTATAAGATTAGCCTG
GTAAAAATTGGAAGGGAGAGTTAACCAATTTGGAATTGAAAACTCGGTTT
TTGCcttataaaagattatatacaCGGTCTATGATGATCTTAGATTAACT
TGTATGCCTTCCCTCTTCTCTTACACCTTAAGAGGactaagttatttttt
tcttttgaactgTAACAGTTCAAGGTACTTCGTGGCGGGTGTTGgcaaaa
aatcaattttgaaagaGTGAATCCGCAAACGAGTAGGATTAACCACTGTC
ATGATTTGACGGAAAATCCATGGATTCAGCACTATCGATCTTCAAGCAAA
CAGAGAAGCACAGTTGCTCCATCCCTTCAAGAAAGTGTCAGTACCTCAAG
CAAAGTTGCTGATTTAGGCCAAAGGAAAGGAATTCCCTCTGGGTCAGGAC
ATCTTCATTTGTGTGAATCTCGTGTCTGCCATAAAGATATGCTTTCTAGT
GACACAGGTGACCCaaattcttcttctcctttgaAAATATCATCTTCAAA
ATTGGCTTTACTGTCTGCATGGCATGCTTAGCATAACCCacattgttttt
ttcatttttttgttgtgttatattattttatgtttaagacCAAATATGAT
TAACAAATGTTAACTGGTGGCCCTCTATAAAGGGTATACTAGAATTCCAC
CTTTATAGAGTGTAATTAAGTGAATgtttagaaaattgattttatagaCT
AtggttaaaatgttttaatgttattattatgttaataacCAACAAAGTGA
GCATATGAGGGAAgttcattttaatctttttgaaaaaataaaaataaaat
attgacctAAACCAAAAATGCACTATTTTTGGTAAGCATTATCTAACTAC
TTATAAAACTTTATCTAAATCATTTGAAAGATTAAATGTGATACATTTCA
Gaattagaagaataaaaaatgaacaaatttaaagaaaaaacaaattagat
tttaaaaatgttagtgATACAAAATTTGTCTTGAGCtgtattaataaaaa
ttcatttctttaCTCAGTACTTAACCTAAAACACATAAACACTTACTGAA
ATTACATTGTGTTTTGAGTTGGTTTTGGATGATTCAACCTGAATCAAACC
AGATACATAAGATTTCAGATAGGTCTGGCGTTTGCAGTGTGAAGATTATT
GCTTCATGTGTGCATCATCCATAACACAATAGTTTGGTTTACTGCTTTTT
TATATATCTACTCTCTGTTATGATTTGCATTCCATTTATTGAaggatttt
aatttttctatctGTTCCTTGCAGAGATGTCAGGCCAGAACTttgttgat
gatgaagtgaaAGGCAAAAAGCAGAATAAAAAAAGCAAAGTGAAACGACA
AAGATCTTTAACTGATGCAAAAGACAATGATCAggtaatatatgatttta
tattataactattttttgcCTGGGATCTCAGAATTTCATGTGCGTGGAGC
TGAGTTATGACCATTTCAAATTGCTTTTTCAGATGGTACCTAACCGAAAA
TCTTCTTCTGGTGGAGATTTTACCAAAGATTTCGTTTCTGCTTGATTAAA
ATAGAGTGAAACTCAGTTTTGTTTCTGCAAGATTTAGAGTTGGTCACGTT
AGTCTCAATCAACCATGAAAAAAAtgatactatttttaaattaaagaatg
tCGATCAATCCTAATTGATGATTAAAAGAGGTGTATTATCATTGATTGAC
TTCCATTTCTCAAACATTAACATGTTATCAACACACTTTTTGATAAATAC
TTTTGATTAAACcctttattgttatttaaaattcataaaaagacTACAAA
AGTTTTGTTGGTCTCTTGTTCGACAGAGTCTTGTTCatatttttgtagtt
ttcaAGGAATTTTAATTAACAGTAGACCAGTGTGTTAAAAGAATGtgttc
ttataattttttttcaatgtgaTTTTGGTTTTCTAGGACTAACGTGACTG
GTCTCAAAATTTTCAGGGGGCAAAATAATAGTTTAGTCACTTAAAAATTC
GAGGGGTTATCAGAAATGTGATTGCTGTAACTTTTATGGATGACACCTTC
TTACTTCGCATCGGAGTTACCAGGGAATTATTACTACTGTGATTAATTCC
TATGAATCAAAAAGATTCTCTGCTGAGATTGCACATGCTAATATTGTACC
CAGAAATTTAATATACAATTAATACTTCTTTATGAACACCCATGCTTCGG
GTTTTCTAGAGTTGTTGCTGTCTGACATAAAAATTATGAAGTTTCTGTAC
ATACATGAAAACTaatttcagtattttttttc

Coding sequence (CDS) from alignment at chr06:35230213..35234244+

>rna-XM_022782546.1_VrVC1973A-SNU_v1 ID=rna-XM_022782546.1_VrVC1973A-SNU_v1; Name=rna-XM_022782546.1; organism=Vigna radiata; type=CDS; length=804bp; location=Sequence derived from: chr06:35230213..35234244+ (Vigna radiata
ATGACACGTGTAAAAGCGCAGACAACTGTATTCCCTTTTTGTTCACCATC
ACCGCCCCTTTCTCTCCTCTTATTCATTCATTTCCTTCACCTTCCAATTC
CCATTGCAAACAAAAATATCACATACATACATACCTATAAGATGAACAAC
AATTTCAGAGTAACAAGAACGCCAGAAGAAACTCCAACCACTTCTTCCAC
CTTCCTCAACCCGATTCAGGGCATTAGAGAGATAGAATCCACAATGGCTG
CAGAGTGGACAGATGAGAAACACAGCATGTATATCAAGTCTATAGAAGCA
TCTTTTGTTAATCAGTTATATGATTCTAAGCAAATGAGGACTTCCTTTCC
CTGCAAAGGAACTTCCTGTGACCCTGCTACCACTTCTGGCCAGTTCAAGG
TACTTCGTGGCGGGTGTTGgcaaaaaatcaattttgaaagaGTGAATCCG
CAAACGAGTAGGATTAACCACTGTCATGATTTGACGGAAAATCCATGGAT
TCAGCACTATCGATCTTCAAGCAAACAGAGAAGCACAGTTGCTCCATCCC
TTCAAGAAAGTGTCAGTACCTCAAGCAAAGTTGCTGATTTAGGCCAAAGG
AAAGGAATTCCCTCTGGGTCAGGACATCTTCATTTGTGTGAATCTCGTGT
CTGCCATAAAGATATGCTTTCTAGTGACACAGAGATGTCAGGCCAGAACT
ttgttgatgatgaagtgaaAGGCAAAAAGCAGAATAAAAAAAGCAAAGTG
AAACGACAAAGATCTTTAACTGATGCAAAAGACAATGATCAgGGGGCAAA
ATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR044678	COR27/28

Vocabulary: **Biological Process**
Term	Definition
GO:0042752	regulation of circadian rhythm
GO:0009409	response to cold

Search form

rna-XM_022782546.1