rna-XM_022782856.1
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F837|A0A3Q0F837_VIGRR (uncharacterized protein LOC111241986 OS=Vigna radiata var. radiata OX=3916 GN=LOC111241986 PE=4 SV=1) HSP 1 Score: 411.764 bits (1057), Expect = 2.759e-145 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 Query: 1 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW 200 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW Sbjct: 1 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW 200
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SX35|A0A0S3SX35_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G093600 PE=4 SV=1) HSP 1 Score: 380.948 bits (977), Expect = 1.387e-130 Identity = 180/198 (90.91%), Postives = 190/198 (95.96%), Query Frame = 0 Query: 1 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 MAS+TG NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+ Sbjct: 1 MASTTGINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 198
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RNS9|A0A0S3RNS9_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G224700 PE=4 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 2.107e-128 Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 0 Query: 3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 +ST NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+ Sbjct: 2 ASTAINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 197
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FF96|A0A3Q0FF96_VIGRR (uncharacterized protein LOC106776001 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776001 PE=4 SV=1) HSP 1 Score: 376.326 bits (965), Expect = 2.287e-128 Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0 Query: 8 NSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 NSSLSATPIITSAKLNWKNY SWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTC SFWKRAQDIFANDVQRLFDATQRAT LKQVNHDMVSHVAKARA VEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHV DQVLAGDQIPSMDGLVTRLLR+ Sbjct: 64 NSSLSATPIITSAKLNWKNYFSWSSTVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCFSFWKRAQDIFANDVQRLFDATQRATSLKQVNHDMVSHVAKARAAVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVRDQVLAGDQIPSMDGLVTRLLRV 254
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FJM0|A0A3Q0FJM0_VIGRR (uncharacterized protein LOC106776001 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776001 PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 4.326e-128 Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0 Query: 8 NSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 NSSLSATPIITSAKLNWKNY SWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTC SFWKRAQDIFANDVQRLFDATQRAT LKQVNHDMVSHVAKARA VEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHV DQVLAGDQIPSMDGLVTRLLR+ Sbjct: 64 NSSLSATPIITSAKLNWKNYFSWSSTVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCFSFWKRAQDIFANDVQRLFDATQRATSLKQVNHDMVSHVAKARAAVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVRDQVLAGDQIPSMDGLVTRLLRV 254
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RTJ2|A0A0S3RTJ2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G111700 PE=4 SV=1) HSP 1 Score: 372.089 bits (954), Expect = 2.009e-127 Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 0 Query: 3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 +ST NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+ Sbjct: 2 ASTAINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 197
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R707|A0A0S3R707_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G443600 PE=4 SV=1) HSP 1 Score: 375.17 bits (962), Expect = 4.946e-127 Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 0 Query: 3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 +ST NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+ Sbjct: 2 ASTAINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 197
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R2N2|A0A0S3R2N2_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G273300 PE=4 SV=1) HSP 1 Score: 357.451 bits (916), Expect = 2.688e-123 Identity = 167/196 (85.20%), Postives = 184/196 (93.88%), Query Frame = 0 Query: 3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 +S+G NSS SATPIITSAKLNWKNYLSWSS+VELWFLGQGHH+HLEQD SMV EEEK QWQKLDFQLCAVLWQSVEQEVLDI+RPYKTC SFWKRAQDIFAND+QRLFDAT++ + LKQVNHDM+SH+AKARA VEELK FFVADSLE++NK+LDK+YMVLIL+SLHSDFDHV DQVLAGDQIPSMD LVTRLLR+ Sbjct: 2 ASSGINSSFSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHNHLEQDASMVSEEEKPQWQKLDFQLCAVLWQSVEQEVLDIMRPYKTCFSFWKRAQDIFANDIQRLFDATEKVSSLKQVNHDMISHIAKARAAVEELKTFFVADSLESINKRLDKYYMVLILRSLHSDFDHVRDQVLAGDQIPSMDNLVTRLLRV 197
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RUT7|A0A0S3RUT7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G172000 PE=4 SV=1) HSP 1 Score: 356.295 bits (913), Expect = 2.338e-121 Identity = 167/196 (85.20%), Postives = 184/196 (93.88%), Query Frame = 0 Query: 3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 +S+G NSS SATPIITSAKLNWKNYLSWSS+VELWFLGQGHH+HLEQD SMV EEEK QWQKLDFQLCAVLWQSVEQEVLDI+RPYKTC SFWKRAQDIFAND+QRLFDAT++ + LKQVNHDM+SH+AKARA VEELK FFVADSLE++NK+LDK+YMVLIL+SLHSDFDHV DQVLAGDQIPSMD LVTRLLR+ Sbjct: 2 ASSGINSSFSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHNHLEQDASMVSEEEKPQWQKLDFQLCAVLWQSVEQEVLDIMRPYKTCFSFWKRAQDIFANDIQRLFDATEKVSSLKQVNHDMISHIAKARAAVEELKTFFVADSLESINKRLDKYYMVLILRSLHSDFDHVRDQVLAGDQIPSMDNLVTRLLRV 197
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RDB9|A0A0S3RDB9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G117700 PE=4 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 1.346e-120 Identity = 166/196 (84.69%), Postives = 183/196 (93.37%), Query Frame = 0 Query: 3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198 +S+G NSS SATPIITSAKLNWKNYLSWSS+VELWFLGQGHH+HLEQD SMV EEEK QWQKLDFQLC VLWQSVEQEVLDI+RPYKTC SFWKRAQDIFAND+QRLFDAT++ + LKQVNHDM+SH+AKARA VEELK FFVADSLE++NK+LDK+YMVLIL+SLHSDFDHV DQVLAGDQIPSMD LVTRLLR+ Sbjct: 2 ASSGINSSFSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHNHLEQDASMVSEEEKPQWQKLDFQLCVVLWQSVEQEVLDIMRPYKTCFSFWKRAQDIFANDIQRLFDATEKVSSLKQVNHDMISHIAKARAAVEELKTFFVADSLESINKRLDKYYMVLILRSLHSDFDHVRDQVLAGDQIPSMDNLVTRLLRV 197 The following BLAST results are available for this feature:
BLAST of rna-XM_022782856.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_022782856.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 0
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1; organism=Vigna radiata; type=mRNA; length=603bpback to top protein sequence of rna-XM_022782856.1_VrVC1973A-SNU_v1 >rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=200bpback to top mRNA from alignment at chr07:3356103..3357427- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1; organism=Vigna radiata; type=mRNA; length=1325bp; location=Sequence derived from: chr07:3356103..3357427- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr07:3356103..3357427- >rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1; organism=Vigna radiata; type=CDS; length=603bp; location=Sequence derived from: chr07:3356103..3357427- (Vigna radiataback to top |