rna-XM_022782856.1

Transcript Overview
Namerna-XM_022782856.1
Unique Namerna-XM_022782856.1_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length603
Productuncharacterized LOC111241986
References
External references for this mRNA
DatabaseAccession
GeneID111241986
GenbankXM_022782856.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr07chromosomechr07:3356103..3357427 -Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asvrvL070Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvrvL603Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavrvL472Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL650Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL693Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL1009Cajanus cajan Asha genome v1.0Cajanus cajan
pvvrvL241Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvrvL328Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvrvL088Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvrvL526Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvrvL058Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvrvL185Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvssR618Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR666Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR705Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvumR518Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR552Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvstR520Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR541Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR579Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL077Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL129Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL267Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vrvvunR463Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR486Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC111241986gene-LOC111241986_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_022782856.1-1exon-XM_022782856.1-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_022638577.1cds-XP_022638577.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_022782856.1_VrVC1973A-SNU_v1rna-XM_022782856.1_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_022782856.1_VrVC1973A-SNU_v1rna-XM_022782856.1_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F837|A0A3Q0F837_VIGRR (uncharacterized protein LOC111241986 OS=Vigna radiata var. radiata OX=3916 GN=LOC111241986 PE=4 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 2.759e-145
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 
Query:    1 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW 200
            MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW
Sbjct:    1 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW 200
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SX35|A0A0S3SX35_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G093600 PE=4 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 1.387e-130
Identity = 180/198 (90.91%), Postives = 190/198 (95.96%), Query Frame = 0 
Query:    1 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            MAS+TG NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR   LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+
Sbjct:    1 MASTTGINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 198
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RNS9|A0A0S3RNS9_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G224700 PE=4 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 2.107e-128
Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 0 
Query:    3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            +ST  NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR   LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+
Sbjct:    2 ASTAINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 197
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FF96|A0A3Q0FF96_VIGRR (uncharacterized protein LOC106776001 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776001 PE=4 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 2.287e-128
Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0 
Query:    8 NSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            NSSLSATPIITSAKLNWKNY SWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTC SFWKRAQDIFANDVQRLFDATQRAT LKQVNHDMVSHVAKARA VEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHV DQVLAGDQIPSMDGLVTRLLR+
Sbjct:   64 NSSLSATPIITSAKLNWKNYFSWSSTVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCFSFWKRAQDIFANDVQRLFDATQRATSLKQVNHDMVSHVAKARAAVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVRDQVLAGDQIPSMDGLVTRLLRV 254
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FJM0|A0A3Q0FJM0_VIGRR (uncharacterized protein LOC106776001 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776001 PE=4 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 4.326e-128
Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0 
Query:    8 NSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            NSSLSATPIITSAKLNWKNY SWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTC SFWKRAQDIFANDVQRLFDATQRAT LKQVNHDMVSHVAKARA VEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHV DQVLAGDQIPSMDGLVTRLLR+
Sbjct:   64 NSSLSATPIITSAKLNWKNYFSWSSTVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCFSFWKRAQDIFANDVQRLFDATQRATSLKQVNHDMVSHVAKARAAVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVRDQVLAGDQIPSMDGLVTRLLRV 254
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RTJ2|A0A0S3RTJ2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G111700 PE=4 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.009e-127
Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 0 
Query:    3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            +ST  NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR   LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+
Sbjct:    2 ASTAINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 197
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R707|A0A0S3R707_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G443600 PE=4 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 4.946e-127
Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 0 
Query:    3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            +ST  NSSLSATPIITSAKLNWKNYLSWSS+VELWFLGQGHHDHLEQDISMV +EEKSQWQKLDFQLCA+LWQSVEQEVLDILRPYKTCSSFWKRA+DIFANDVQRLFDATQR   LKQVNHDMVSH+AKARA VEELKNFFVADSLE +NKKLDKFYMVLIL+SLHSD+DHV DQVLAGDQIPSMDGLVTRLLR+
Sbjct:    2 ASTAINSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPDEEKSQWQKLDFQLCAILWQSVEQEVLDILRPYKTCSSFWKRAEDIFANDVQRLFDATQRVASLKQVNHDMVSHIAKARAAVEELKNFFVADSLEGINKKLDKFYMVLILRSLHSDYDHVRDQVLAGDQIPSMDGLVTRLLRV 197
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R2N2|A0A0S3R2N2_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G273300 PE=4 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 2.688e-123
Identity = 167/196 (85.20%), Postives = 184/196 (93.88%), Query Frame = 0 
Query:    3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            +S+G NSS SATPIITSAKLNWKNYLSWSS+VELWFLGQGHH+HLEQD SMV EEEK QWQKLDFQLCAVLWQSVEQEVLDI+RPYKTC SFWKRAQDIFAND+QRLFDAT++ + LKQVNHDM+SH+AKARA VEELK FFVADSLE++NK+LDK+YMVLIL+SLHSDFDHV DQVLAGDQIPSMD LVTRLLR+
Sbjct:    2 ASSGINSSFSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHNHLEQDASMVSEEEKPQWQKLDFQLCAVLWQSVEQEVLDIMRPYKTCFSFWKRAQDIFANDIQRLFDATEKVSSLKQVNHDMISHIAKARAAVEELKTFFVADSLESINKRLDKYYMVLILRSLHSDFDHVRDQVLAGDQIPSMDNLVTRLLRV 197
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RUT7|A0A0S3RUT7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G172000 PE=4 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 2.338e-121
Identity = 167/196 (85.20%), Postives = 184/196 (93.88%), Query Frame = 0 
Query:    3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            +S+G NSS SATPIITSAKLNWKNYLSWSS+VELWFLGQGHH+HLEQD SMV EEEK QWQKLDFQLCAVLWQSVEQEVLDI+RPYKTC SFWKRAQDIFAND+QRLFDAT++ + LKQVNHDM+SH+AKARA VEELK FFVADSLE++NK+LDK+YMVLIL+SLHSDFDHV DQVLAGDQIPSMD LVTRLLR+
Sbjct:    2 ASSGINSSFSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHNHLEQDASMVSEEEKPQWQKLDFQLCAVLWQSVEQEVLDIMRPYKTCFSFWKRAQDIFANDIQRLFDATEKVSSLKQVNHDMISHIAKARAAVEELKTFFVADSLESINKRLDKYYMVLILRSLHSDFDHVRDQVLAGDQIPSMDNLVTRLLRV 197
[Close]
BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RDB9|A0A0S3RDB9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G117700 PE=4 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 1.346e-120
Identity = 166/196 (84.69%), Postives = 183/196 (93.37%), Query Frame = 0 
Query:    3 SSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQDISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQDIFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRI 198
            +S+G NSS SATPIITSAKLNWKNYLSWSS+VELWFLGQGHH+HLEQD SMV EEEK QWQKLDFQLC VLWQSVEQEVLDI+RPYKTC SFWKRAQDIFAND+QRLFDAT++ + LKQVNHDM+SH+AKARA VEELK FFVADSLE++NK+LDK+YMVLIL+SLHSDFDHV DQVLAGDQIPSMD LVTRLLR+
Sbjct:    2 ASSGINSSFSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHNHLEQDASMVSEEEKPQWQKLDFQLCVVLWQSVEQEVLDIMRPYKTCFSFWKRAQDIFANDIQRLFDATEKVSSLKQVNHDMISHIAKARAAVEELKTFFVADSLESINKRLDKYYMVLILRSLHSDFDHVRDQVLAGDQIPSMDNLVTRLLRV 197
The following BLAST results are available for this feature:
BLAST of rna-XM_022782856.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_022782856.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_022782856.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q0F837|A0A3Q0F837_VIGRR2.759e-145100.00uncharacterized protein LOC111241986 OS=Vigna radi... [more]
tr|A0A0S3SX35|A0A0S3SX35_PHAAN1.387e-13090.91Uncharacterized protein (Fragment) OS=Vigna angula... [more]
tr|A0A0S3RNS9|A0A0S3RNS9_PHAAN2.107e-12890.31Uncharacterized protein (Fragment) OS=Vigna angula... [more]
tr|A0A3Q0FF96|A0A3Q0FF96_VIGRR2.287e-12895.29uncharacterized protein LOC106776001 isoform X3 OS... [more]
tr|A0A3Q0FJM0|A0A3Q0FJM0_VIGRR4.326e-12895.29uncharacterized protein LOC106776001 isoform X2 OS... [more]
tr|A0A0S3RTJ2|A0A0S3RTJ2_PHAAN2.009e-12790.31Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0S3R707|A0A0S3R707_PHAAN4.946e-12790.31Uncharacterized protein (Fragment) OS=Vigna angula... [more]
tr|A0A0S3R2N2|A0A0S3R2N2_PHAAN2.688e-12385.20Uncharacterized protein (Fragment) OS=Vigna angula... [more]
tr|A0A0S3RUT7|A0A0S3RUT7_PHAAN2.338e-12185.20Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0S3RDB9|A0A0S3RDB9_PHAAN1.346e-12084.69Uncharacterized protein OS=Vigna angularis var. an... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 62..197
e-value: 1.9E-6
score: 27.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1; organism=Vigna radiata; type=mRNA; length=603bp
ATGGCTTCTTCTACTGGAAGTAATTCCTCTTTATCTGCTACCCCTATCAT
TACATCTGCAAAACTGAATTGGAAAAATTATTTATCATGGTCCTCTAGTG
TGGAGTTGTGGTTTCTTGGTCAAGGACACCATGATCACCTTGAACAAGAT
ATTTCTATGGTCCTAGAAGAAGAAAAATCTCAGTGGCAAAAATTAGACTT
TCAATTATGTGCTGTTTTGTGGCAATCAGTTGAGCAAGAGGTTCTAGATA
TCTTGAGACCCTATAAGACATGCTCCTCTTTTTGGAAAAGGGCCCAAGAC
ATTTTTGCTAATGATGTACAACGTCTTTTTGATGCAACCCAAAGAGCAAC
TTTTCTCAAACAAGTCAACCATGATATGGTTTCTCATGTTGCAAAAGCTC
GGGCTACGGTAGAAGAGTTAAAGAACTTCTTTGTAGCTGACTCATTAGAA
AATCTCAACAAAAAGCTTGACAAGTTCTACATGGTCCTAATCCTGAAAAG
TTTACACTCTGATTTTGATCATGTATGTGATCAAGTTTTAGCTGGTGATC
AAATCCCGTCGATGGATGGCTTAGTTACTCGACTCCTTCGGATACATTGG
TAA
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protein sequence of rna-XM_022782856.1_VrVC1973A-SNU_v1

>rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=200bp
MASSTGSNSSLSATPIITSAKLNWKNYLSWSSSVELWFLGQGHHDHLEQD
ISMVLEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKRAQD
IFANDVQRLFDATQRATFLKQVNHDMVSHVAKARATVEELKNFFVADSLE
NLNKKLDKFYMVLILKSLHSDFDHVCDQVLAGDQIPSMDGLVTRLLRIHW
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mRNA from alignment at chr07:3356103..3357427-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1; organism=Vigna radiata; type=mRNA; length=1325bp; location=Sequence derived from: chr07:3356103..3357427- (Vigna radiata
TGTTAGGGGCTTCCCGTCCTTTACTTTTCAGAACTACTGTCTTCTATATA
TACAATAGTAAGTTGTATTAGTTGATGTTAATCAAGATATAAGAGTTTTC
ATTTTTCTCTCAACTTCAAGTTGGTATCAAGAGCCAGACTCTTTGTCTTC
TTCCTCTATCGTCGGCGGCATCATCTCCCTGTCATTTCCGCTGTTCGCCG
TCGTCGCGTCGCCGTCCTCTGCCTTCGCCGCCACCGTCTGCCGTCGCTTT
CTCCGGCAAAGTCAAGGGTTAGGTGCGCCTTGAGAAGCGCAACCCAACCC
TGGTGGTCTCGTCCTCTGAAACCACCGCACCTGCTGTCACGCGCCGCTTC
TTTTCGGCCAGTCTCGAGCGCGTATTCTGCACGCGCCGCCTTCCTGTGGT
CGGAGCTTCACCGTGTCGCCGCAGAACGTGTCGCCGCAGAAAGTCTCGCC
GTAGCTTCTGGAGTGTGTTTTGGTTCCTGTTTCTCTGTTTCGTTGGCTTG
GGCTCATACCTAGGGTTTTCTCCTTACGTATTATGAAACCCTAGGTCCTA
TTTCTTCTCTCAGTTTTAAAATGGCTTCTTCTACTGGAAGTAATTCCTCT
TTATCTGCTACCCCTATCATTACATCTGCAAAACTGAATTGGAAAAATTA
TTTATCATGGTCCTCTAGTGTGGAGTTGTGGTTTCTTGGTCAAGGACACC
ATGATCACCTTGAACAAGATATTTCTATGGTCCTAGAAGAAGAAAAATCT
CAGTGGCAAAAATTAGACTTTCAATTATGTGCTGTTTTGTGGCAATCAGT
TGAGCAAGAGGTTCTAGATATCTTGAGACCCTATAAGACATGCTCCTCTT
TTTGGAAAAGGGCCCAAGACATTTTTGCTAATGATGTACAACGTCTTTTT
GATGCAACCCAAAGAGCAACTTTTCTCAAACAAGTCAACCATGATATGGT
TTCTCATGTTGCAAAAGCTCGGGCTACGGTAGAAGAGTTAAAGAACTTCT
TTGTAGCTGACTCATTAGAAAATCTCAACAAAAAGCTTGACAAGTTCTAC
ATGGTCCTAATCCTGAAAAGTTTACACTCTGATTTTGATCATGTATGTGA
TCAAGTTTTAGCTGGTGATCAAATCCCGTCGATGGATGGCTTAGTTACTC
GACTCCTTCGGATACATTGGTAAAGGAAGAGAATTTAAATGATGTTATTG
AAACATCAGCAATGGTGACACCGTGAGGAAGAGGAGGAGGTAGGAGCAAT
CGAGGAGGACGTGGTGGTCGAAGTAGACGTCCTCAATGCTCATATTGTAA
GAGAATGGGTCATACCCAAGATAAA
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Coding sequence (CDS) from alignment at chr07:3356103..3357427-

>rna-XM_022782856.1_VrVC1973A-SNU_v1 ID=rna-XM_022782856.1_VrVC1973A-SNU_v1; Name=rna-XM_022782856.1; organism=Vigna radiata; type=CDS; length=603bp; location=Sequence derived from: chr07:3356103..3357427- (Vigna radiata
ATGGCTTCTTCTACTGGAAGTAATTCCTCTTTATCTGCTACCCCTATCAT
TACATCTGCAAAACTGAATTGGAAAAATTATTTATCATGGTCCTCTAGTG
TGGAGTTGTGGTTTCTTGGTCAAGGACACCATGATCACCTTGAACAAGAT
ATTTCTATGGTCCTAGAAGAAGAAAAATCTCAGTGGCAAAAATTAGACTT
TCAATTATGTGCTGTTTTGTGGCAATCAGTTGAGCAAGAGGTTCTAGATA
TCTTGAGACCCTATAAGACATGCTCCTCTTTTTGGAAAAGGGCCCAAGAC
ATTTTTGCTAATGATGTACAACGTCTTTTTGATGCAACCCAAAGAGCAAC
TTTTCTCAAACAAGTCAACCATGATATGGTTTCTCATGTTGCAAAAGCTC
GGGCTACGGTAGAAGAGTTAAAGAACTTCTTTGTAGCTGACTCATTAGAA
AATCTCAACAAAAAGCTTGACAAGTTCTACATGGTCCTAATCCTGAAAAG
TTTACACTCTGATTTTGATCATGTATGTGATCAAGTTTTAGCTGGTGATC
AAATCCCGTCGATGGATGGCTTAGTTACTCGACTCCTTCGGATACATTGG
TAA
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