rna-XM_027332641.1

Transcript Overview
Namerna-XM_027332641.1
Unique Namerna-XM_027332641.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length330
Productuncharacterized LOC101506173
References
External references for this mRNA
DatabaseAccession
GeneID101506173
GenBankXM_027332641.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:38257392..38259453 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascanL169Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL172Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL081Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL237Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0388Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0568Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0615Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0754Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanR094Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0248Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1013Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0369Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0288Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0318Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR278Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR279Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR166Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvrvR168Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR170Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR176Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR217Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvrvR211Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR222Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cantifR183Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR192Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvssR223Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR248Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR150Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR171Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuaR186Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR186Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuR188Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR185Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canpsR194Pisum sativum Cameor genome v1aPisum sativum
canpsR239Pisum sativum Cameor genome v1aPisum sativum
avjcanL115Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL117Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL291Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR133Cicer arietinum
cancarR160Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101506173gene-LOC101506173_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027332641.1-1exon-XM_027332641.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027332641.1-2exon-XM_027332641.1-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027332641.1-3exon-XM_027332641.1-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027332641.1-4exon-XM_027332641.1-4_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027188442.1cds-XP_027188442.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS
cds-XP_027188442.1cds-XP_027188442.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_027188442.1cds-XP_027188442.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_027188442.1cds-XP_027188442.1_CaCDCfrontier-NCBI_v1_4Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027332641.1_CaCDCfrontier-NCBI_v1rna-XM_027332641.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027332641.1_CaCDCfrontier-NCBI_v1rna-XM_027332641.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_027332641.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:9703130-9704653 REVERSE LENGTH=282)

HSP 1 Score: 165.622 bits (418), Expect = 3.985e-52
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGS-DEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            AVPDP  VTVKF DSNLQTFPPS  QGKI+GG+ PPRDADD+FS+PV+G+ DEPQ  GWL  F V AYKPYFDVDTSDV+ER+ +SLFPFRGTF EKT+ NPDL
Sbjct:   22 AVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDADDTFSRPVNGTTDEPQSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTANNPDL 125
[Close]
BLAST of rna-XM_027332641.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:1503992-1505554 REVERSE LENGTH=281)

HSP 1 Score: 154.451 bits (389), Expect = 9.565e-48
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGS-DEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            +VPDP   TVKF +SNLQTFPPS  QGKI+GGS PPRDADDSFS   +GS DEPQ GGWL  F V AYKP+FDVDTSDV+ER+ +SLFPFRGTF EKT+  PDL
Sbjct:   21 SVPDPGHTTVKFAESNLQTFPPSATQGKISGGSNPPRDADDSFSGHGNGSTDEPQSGGWLHKFTVGAYKPFFDVDTSDVVERLKESLFPFRGTFTEKTADKPDL 124
[Close]
BLAST of rna-XM_027332641.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:16610216-16612353 REVERSE LENGTH=275)

HSP 1 Score: 50.0618 bits (118), Expect = 3.597e-8
Identity = 32/89 (35.96%), Postives = 43/89 (48.31%), Query Frame = 0 
Query:   21 SNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            +++Q FPP+   G  T G +       +   P  G  +     W   F V +Y  YFDVDT  VL R++ SL+P  G F  K   NPDL
Sbjct:   41 ASMQIFPPNL--GNNTKGYQ-------TLESPTEGPAQQPSNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFFNKIDANPDL 120
[Close]
BLAST of rna-XM_027332641.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:16610216-16612353 REVERSE LENGTH=276)

HSP 1 Score: 48.9062 bits (115), Expect = 9.007e-8
Identity = 33/89 (37.08%), Postives = 43/89 (48.31%), Query Frame = 0 
Query:   21 SNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            +++Q FPP+   G  T G +         S  V G  +     W   F V +Y  YFDVDT  VL R++ SL+P  G F  K   NPDL
Sbjct:   41 ASMQIFPPNL--GNNTKGYQTLE------SPTVEGPAQQPSNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFFNKIDANPDL 121
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7Y933|A0A3Q7Y933_CICAR (Uncharacterized protein LOC101506173 OS=Cicer arietinum OX=3827 GN=LOC101506173 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 3.337e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MNPSRVAVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            MNPSRVAVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL
Sbjct:    1 MNPSRVAVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XW84|A0A1S2XW84_CICAR (Protein YIP OS=Cicer arietinum OX=3827 GN=LOC101505852 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.388e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL
Sbjct:   21 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 123
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z8W9|A0A1S2Z8W9_CICAR (Uncharacterized protein LOC101494377 OS=Cicer arietinum OX=3827 GN=LOC101494377 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.702e-59
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0 
Query:   18 FTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            F DSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL
Sbjct:    4 FVDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 95
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|I3S8W2|I3S8W2_MEDTR (Protein YIPF OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.325e-57
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 0 
Query:   17 KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGS-DEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKP SGS DEPQQGGWLRNFA+A YKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL
Sbjct:   32 KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPASGSSDEPQQGGWLRNFAIATYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 125
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|G7KYP9|G7KYP9_MEDTR (Protein YIP OS=Medicago truncatula OX=3880 GN=11434181 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.114e-56
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 0 
Query:   17 KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGS-DEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKP SGS DEPQQGGWLRNFA+A YKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL
Sbjct:   32 KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPASGSSDEPQQGGWLRNFAIATYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 125
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8T2YQ61|A0A8T2YQ61_POPDE (Protein YIP OS=Populus deltoides OX=3696 GN=H0E87_009763 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.251e-56
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            AVPDP  VTV+FTDSNLQTFPPS +QGKI+GGSRPPRDADD+FSKP+SGSDEPQQGGW R F +AAYKPYFDVDT+DVLERI DSLFPFRGTF EKT+ NPDL
Sbjct:   24 AVPDPGHVTVQFTDSNLQTFPPSGSQGKISGGSRPPRDADDTFSKPISGSDEPQQGGWFRTFTIAAYKPYFDVDTTDVLERIKDSLFPFRGTFTEKTANNPDL 126
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K2AB05|A0A2K2AB05_POPTR (Protein YIP OS=Populus trichocarpa OX=3694 GN=POPTR_005G033900 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.926e-56
Identity = 85/103 (82.52%), Postives = 94/103 (91.26%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            AVPDP  VTV+FTDSNLQTFPPS +QGKI+GGSRPPRDADD+FSKP+SGSDEPQQGGW R F +AAYKPYFDVDT++VLERI DSLFPFRGTF EKT+ NPDL
Sbjct:   24 AVPDPGHVTVQFTDSNLQTFPPSGSQGKISGGSRPPRDADDTFSKPISGSDEPQQGGWFRTFTIAAYKPYFDVDTTEVLERIKDSLFPFRGTFTEKTANNPDL 126
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4XQJ9|A0A9D4XQJ9_PEA (Protein YIP OS=Pisum sativum OX=3888 GN=KIW84_030486 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.447e-56
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0 
Query:   17 KFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSG--SDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            KFTDSNLQTFPPSQA GKITGGSRPPRDADDSFSKPVSG  SDEPQQGGWL+ FAVA+YKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL
Sbjct:   32 KFTDSNLQTFPPSQAHGKITGGSRPPRDADDSFSKPVSGGSSDEPQQGGWLQTFAVASYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 126
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8X7ZSC6|A0A8X7ZSC6_POPTO (Protein YIP OS=Populus tomentosa OX=118781 GN=POTOM_020493 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.311e-55
Identity = 85/103 (82.52%), Postives = 94/103 (91.26%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            AV DP  VTV+FTDSNLQTFPPS +QGKI+GGSRPPRDADD+FSKP+SGSDEPQQGGW R F +AAYKPYFDVDT+DVLERI DSLFPFRGTF EKT++NPDL
Sbjct:   24 AVSDPGHVTVQFTDSNLQTFPPSGSQGKISGGSRPPRDADDTFSKPISGSDEPQQGGWFRTFTIAAYKPYFDVDTTDVLERIKDSLFPFRGTFTEKTASNPDL 126
[Close]
BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Match: tr|V7BPT0|V7BPT0_PHAVU (Protein YIP OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G092500g PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.693e-55
Identity = 87/103 (84.47%), Postives = 90/103 (87.38%), Query Frame = 0 
Query:    7 AVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFSKPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFNEKTSTNPDL 109
            AVPD   VTV F DSNLQTFPPS  QGKIT  S PPRDADDSFSKP+SGSDEPQQGGW R F VAAYKPYFDVDTSDVLERIIDSLFPFRG+FNEKT+TNPDL
Sbjct:   20 AVPDSRHVTVNFADSNLQTFPPSATQGKITAASGPPRDADDSFSKPISGSDEPQQGGWFRTFTVAAYKPYFDVDTSDVLERIIDSLFPFRGSFNEKTATNPDL 122
The following BLAST results are available for this feature:
BLAST of rna-XM_027332641.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
|3.985e-5275.00Symbols: no symbol available | no full name availa... [more]
|9.565e-4872.12Symbols: no symbol available | no full name availa... [more]
|3.597e-835.96Symbols: no symbol available | no full name availa... [more]
|9.007e-837.08Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_027332641.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_027332641.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7Y933|A0A3Q7Y933_CICAR3.337e-72100.00Uncharacterized protein LOC101506173 OS=Cicer arie... [more]
tr|A0A1S2XW84|A0A1S2XW84_CICAR1.388e-67100.00Protein YIP OS=Cicer arietinum OX=3827 GN=LOC10150... [more]
tr|A0A1S2Z8W9|A0A1S2Z8W9_CICAR5.702e-5998.91Uncharacterized protein LOC101494377 OS=Cicer arie... [more]
tr|I3S8W2|I3S8W2_MEDTR2.325e-5795.74Protein YIPF OS=Medicago truncatula OX=3880 PE=2 S... [more]
tr|G7KYP9|G7KYP9_MEDTR1.114e-5695.74Protein YIP OS=Medicago truncatula OX=3880 GN=1143... [more]
tr|A0A8T2YQ61|A0A8T2YQ61_POPDE2.251e-5683.50Protein YIP OS=Populus deltoides OX=3696 GN=H0E87_... [more]
tr|A0A2K2AB05|A0A2K2AB05_POPTR5.926e-5682.52Protein YIP OS=Populus trichocarpa OX=3694 GN=POPT... [more]
tr|A0A9D4XQJ9|A0A9D4XQJ9_PEA7.447e-5693.68Protein YIP OS=Pisum sativum OX=3888 GN=KIW84_0304... [more]
tr|A0A8X7ZSC6|A0A8X7ZSC6_POPTO1.311e-5582.52Protein YIP OS=Populus tomentosa OX=118781 GN=POTO... [more]
tr|V7BPT0|V7BPT0_PHAVU1.693e-5584.47Protein YIP OS=Phaseolus vulgaris OX=3885 GN=PHAVU... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039765Protein Yip5/YIPF1/YIPF2PANTHERPTHR12822UNCHARACTERIZEDcoord: 15..109

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027332641.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332641.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332641.1; organism=Cicer arietinum; type=mRNA; length=330bp
ATGAACCCCAGCAGGGTGGCCGTTCCAGATCCACCATCTGTAACCGTCAA
GTTCACCGATTCGAATCTTCAGACATTTCCCCCATCCCAAGCTCAGGGGA
AGATTACCGGTGGTTCTAGGCCACCTCGTGATGCAGATGATTCATTTTCA
AAACCTGTATCTGGTTCTGATGAACCCCAGCAGGGTGGTTGGCTTCGGAA
TTTTGCAGTTGCTGCTTACAAACCATACTTTGACGTTGACACTTCAGATG
TTTTGGAGAGGATTATAGACTCACTTTTTCCATTCAGAGGAACTTTTAAT
GAAAAAACTTCTACCAACCCTGATTTGTAA
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protein sequence of rna-XM_027332641.1_CaCDCfrontier-NCBI_v1

>rna-XM_027332641.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332641.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332641.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=109bp
MNPSRVAVPDPPSVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDADDSFS
KPVSGSDEPQQGGWLRNFAVAAYKPYFDVDTSDVLERIIDSLFPFRGTFN
EKTSTNPDL
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mRNA from alignment at chr3:38257392..38259453+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027332641.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332641.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332641.1; organism=Cicer arietinum; type=mRNA; length=2062bp; location=Sequence derived from: chr3:38257392..38259453+ (Cicer arietinum
TTGGGTGTGGGTTAGGTTTGGGAGGCCCGCACATGTGGGTTCTGCAAAGT
AAGCAGCATCAACACATGAAGAGCCCATCACCCCTCCATAAATTCTTGCA
CCAATATACGGATGCGGCGACCGGCTCTCACCGCTCGCTTTGTTTTCCTT
ACTCATTAGTTTAAGGCAACGATAATCGTAGCAATAACCTTCTTATTTAT
ACACTACATGTTGGCTTCTTGAAAACAATATAACCGATGTGGGACTTTAA
CTACATTATTACTAGCATTATAATAGCTCCATCTTCTCCTTCTTCTTCGT
CACCACCAAACGTCGGAGTCATGCTCGTTCCTCTGTTCATGTCGAACTGT
GCGACTCATGtagattcattttcaaaaccTTTATCTGGTTCTGATGAACC
CCAGCAGGGTGGTTGGCTTCGGAATTTTGCAGTTTTTTTTCCATCCAAAT
TTTATCATTCTGTTTTGACTCTAATTTATTACAGGCCGTTCCAGATCCAC
CATCTGTAACCGTCAAGTTCACCGGTACAACTCTTCATAACTTCGTTTCC
atttttgattttgttaatCGATTCATTTGAATAGATCAGTTTCCGTTGTT
GGATTTTGATAGCTGGAAACTCCTCCATTTTCAATTGCTTGTGTTTTTGT
TCCTAATTAAGTTTGCGTGAATTTAATTTGAATCTGTTATTTTTTAGACT
CGGTTTTGTTGAATTGATTTCATAgagaatatttgatttgatgatCGAAT
GTTTTACTTTGTAGATTCGAATCTTCAGACATTTCCCCCATCCCAAGCTC
AGGGGAAGATTACCGGTGGTTCTAGGCCACCTCGTGATGCAGATGGTATG
TTGTTTTGCTTCTAGATGCATTACTCGTAATAACTGATCCAGTTATGATT
TTTGATTTGAATGTGAGTGAGAATATGCTTTCACTGCTCCGTCTTAGCTA
ATCTTAGCTAAGCCGCTGTGCAATTAATATTCTTACTTCTTAGTGGGAAT
AATAGCAGTGTTGTTAATAGCGGATTGCAATAAAATgtgttcaaattctg
ctatgcAACAATACTGTAGtgctgctatttgacaacattatAAATTGCTC
GTGGAACAATAGCGATTTGATCAAATTTCAATACGATATAGCTGCTATTT
AGCAACACTGGGTAATAGATACTGAACTTGAGGGATTTAGTTGAACGGTC
TAGAGATCAGGGTTTTAAATAGTGGTTGTAGTTGATATTGTGGAGAATTG
CATCAAATGCAGCTAAGTTGCGGGAAAATCATCATATAAAACCGTAATGT
CACGTCCCAGATTGAAGTGCCTGACCTTTATTTAAAACTTTGCTTGAGAT
AACAACATAGTAAAGGAGATGACATCATAGGGGACTTGGGTTTTACTGAT
ATTGGCGATATTTGACAGGTTTTAAAATACTGATATTGGAAATTAGAAAG
ATATGCCTGGAAGAAGCAACTGTGAGGGAAACATGGGTTTATGCTTATTA
TTTATAGCATAACATTGCCTTTTGTGCTTCTAGCATTATGGTTGAACTTA
tgatgtttaattaattttcttgcTTATCAGTCTGACGTGTTCATGTCGAA
CTGTGCGACTCATGtagattcattttcaaaaccTGTATCTGGTTCTGATG
AACCCCAGCAGGGTGGTTGGCTTCGGAATTTTGCAGTTGCTGCTTACAAA
CCATACTTTGACGTTGACACTTCAGATGTTTTGGAGAGGATTATAGACTC
ACTTTTTCCATTCAGAGGAACTTTTAATGAAAAAACTTCTACCAACCCTG
ATTTGTAAGTAGACCTTTTCTTTTGCTCATTTAATGGACCGATCAGACTA
ATAATACTTAAGTTATGAGTTCTGACATATTTCAATATTCAACTATGGCG
TGgatattgttaatattatttttatgaagaatAGGTGTAGCTAAATTGTT
TTGAGTTGTGACCAGTTCTGAAATGCTAATGTCCTCTGAGCCATAATAAT
GTAGAAGACATCAATGAAGAACTATAATACATTGGTGATTTTGAGTTTTG
Tgctctatttta
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Coding sequence (CDS) from alignment at chr3:38257392..38259453+

>rna-XM_027332641.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332641.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332641.1; organism=Cicer arietinum; type=CDS; length=330bp; location=Sequence derived from: chr3:38257392..38259453+ (Cicer arietinum
ATGAACCCCAGCAGGGTGGCCGTTCCAGATCCACCATCTGTAACCGTCAA
GTTCACCGATTCGAATCTTCAGACATTTCCCCCATCCCAAGCTCAGGGGA
AGATTACCGGTGGTTCTAGGCCACCTCGTGATGCAGATGattcattttca
aaaccTGTATCTGGTTCTGATGAACCCCAGCAGGGTGGTTGGCTTCGGAA
TTTTGCAGTTGCTGCTTACAAACCATACTTTGACGTTGACACTTCAGATG
TTTTGGAGAGGATTATAGACTCACTTTTTCCATTCAGAGGAACTTTTAAT
GAAAAAACTTCTACCAACCCTGATTTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR039765Yip5/YIPF1/YIPF2
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0031267small GTPase binding
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus