rna-XM_027332647.1
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_027332647.1 vs. Araport11
Match: | (Symbols: ATTSPO, TSPO | TSPO(outer membrane tryptophan-rich sensory protein)-related | chr2:19568701-19569291 FORWARD LENGTH=196) HSP 1 Score: 166.777 bits (421), Expect = 3.032e-52 Identity = 86/199 (43.22%), Postives = 120/199 (60.30%), Query Frame = 0 Query: 1 MDSANLKQR-------LTT---PDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKL 189 MDS +++ R TT + S + K K+D++ MAKRGL+SL +AV+ P+ + L + Y + S + N+ +K W PPLW LH C ASS LMGL+AW+VW DGGFH+ P AL LYL Q L ++WDPV F VG+ GL + G ++FGC F +++ V +L+KPCLAW AF+ VN+KL Sbjct: 1 MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGT--SDGYGNR----AKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 2.901e-51 Identity = 86/199 (43.22%), Postives = 120/199 (60.30%), Query Frame = 0 Query: 1 MDSANLKQR-------LTT---PDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKL 189 MDS +++ R TT + S + K K+D++ MAKRGL+SL +AV+ P+ + L + Y + S + N+ +K W PPLW LH C ASS LMGL+AW+VW DGGFH+ P AL LYL Q L ++WDPV F VG+ GL + G ++FGC F +++ V +L+KPCLAW AF+ VN+KL Sbjct: 1 MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGT--SDGYGNR----AKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|P50637|TSPO_MOUSE (Translocator protein OS=Mus musculus OX=10090 GN=Tspo PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 5.636e-8 Identity = 36/114 (31.58%), Postives = 52/114 (45.61%), Query Frame = 0 Query: 75 KKPFWFPPLWALHLICPASSFLMGLSAWMVWAD-GGFHRNP-TALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVN 186 +KP W PP W L I MG +++VW + GGF + L LY QL W P+ FG + L + G L + +V+ L+ P LAW+AF ++N Sbjct: 38 QKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATVLN 151
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|P30536|TSPO_HUMAN (Translocator protein OS=Homo sapiens OX=9606 GN=TSPO PE=1 SV=3) HSP 1 Score: 52.373 bits (124), Expect = 1.425e-7 Identity = 41/148 (27.70%), Postives = 68/148 (45.95%), Query Frame = 0 Query: 41 IIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWAD-GGF-HRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVN 186 + A+ F L+ +L ++ S F + G +KP W PP W L + MG +++VW + GGF + L LY QL W P+ FG + L+ + G+ + + +V+ + L+ P LAW+AF +N Sbjct: 6 VPAMGFTLAPSL-GCFVGSRFVHGE-GLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLN 151
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|P16257|TSPO_RAT (Translocator protein OS=Rattus norvegicus OX=10116 GN=Tspo PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 1.624e-7 Identity = 35/114 (30.70%), Postives = 52/114 (45.61%), Query Frame = 0 Query: 75 KKPFWFPPLWALHLICPASSFLMGLSAWMVWAD-GGFHRNP-TALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVN 186 +KP W PP W L I MG ++++W + GGF L LY QL W P+ FG + L+ + G L + +V+ L+ P LAW+AF ++N Sbjct: 38 QKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAMVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATMLN 151
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XTT4|A0A1S2XTT4_CICAR (Translocator protein homolog OS=Cicer arietinum OX=3827 GN=LOC101510570 PE=3 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 3.527e-136 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 Query: 1 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI Sbjct: 1 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4XUM9|A0A9D4XUM9_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_030996 PE=3 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 2.223e-91 Identity = 138/205 (67.32%), Postives = 160/205 (78.05%), Query Frame = 0 Query: 3 SANLKQRLTTPDQ---------------STSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 + +LKQR TPDQ TS H K+DKRM MA RGLRSLIIAVSFPLS+ LLSIYI+SSF+ SNHNN+ + S+KPFWFPP W LHL+ P+SSFLMGLSAW+VWA+G FHR+PTA LLYL+QLLFTVLW+PVVFGVGATS GL+LC GIFGS+ GCM VFGKVN DLIKPCLA ++FLFIVNLKL++I Sbjct: 48 TTDLKQRFVTPDQTTTTNTTTTNDDDKNGTSNH----KRDKRMAMATRGLRSLIIAVSFPLSLTLLSIYIASSFTFSNHNNESITSSRKPFWFPPSWLLHLMLPSSSFLMGLSAWLVWAEGAFHRDPTAFLLYLIQLLFTVLWEPVVFGVGATSLGLLLCLGIFGSLIGCMYVFGKVNPAASDLIKPCLAVVSFLFIVNLKLIYI 248
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|G7KRV8|G7KRV8_MEDTR (TSPO/MBR family protein OS=Medicago truncatula OX=3880 GN=11432520 PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 2.948e-81 Identity = 138/195 (70.77%), Postives = 161/195 (82.56%), Query Frame = 0 Query: 3 SANLKQRLTTPDQ-----STSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 +A+LKQR TPDQ + I K+DK+M MAK GLRSLIIAVSFPLSI LLSIYISSSF+ SNHN +++ GSKKPFWFPP WALHL+ P+SSFLMGLSAWMVWA GGFHR+ TALLLYLLQ+L+TVLW+P+VF GATSFGL++CFG F ++FGCM +F KVN V +LIKPCLA IAFLFIVNLKL+FI Sbjct: 6 TADLKQRNITPDQTTTTTNDRNGTISHKRDKKMKMAKGGLRSLIIAVSFPLSITLLSIYISSSFTFSNHNKEVITGSKKPFWFPPSWALHLLLPSSSFLMGLSAWMVWAAGGFHRDLTALLLYLLQILYTVLWNPLVFRFGATSFGLLVCFGNFVTLFGCMRLFKKVNPVAANLIKPCLALIAFLFIVNLKLIFI 200
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8LCS9|A0A8B8LCS9_ABRPR (Translocator protein homolog OS=Abrus precatorius OX=3816 GN=LOC113863646 PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 5.528e-81 Identity = 124/192 (64.58%), Postives = 144/192 (75.00%), Query Frame = 0 Query: 1 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 M S +LK R+T + ++ K ++DKRM+MAKRGLRSL IAV PLS+ +LS I SS S + + + +KPFWFPP WALHL CPASSFLMGLSAWMVWADGGFHRNP ALLLY QLLFTVLWDP+V G GAT GLM+CFG+F S GCM VF +N + DLIKPCL WIAFLFIVNLKLLF+ Sbjct: 1 MASNDLKHRITPNPGPDTMNDKKKRRDKRMVMAKRGLRSLAIAVFLPLSLTVLSACIGSSMHSQSRAHDAV-TWRKPFWFPPSWALHLTCPASSFLMGLSAWMVWADGGFHRNPMALLLYFTQLLFTVLWDPIVLGAGATRVGLMVCFGLFLSQVGCMRVFRPINPIAGDLIKPCLPWIAFLFIVNLKLLFV 191
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5P8Q6|A0A6A5P8Q6_LUPAL (Translocator protein homolog OS=Lupinus albus OX=3870 GN=Lal_00003872 PE=3 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 4.212e-76 Identity = 116/196 (59.18%), Postives = 148/196 (75.51%), Query Frame = 0 Query: 1 MDSANLKQRLTTPDQSTSEHEIKT----KKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 M S +KQR T +T ++ ++ ++DKRM+MAK G RSL IAVS PLS+ L+S+Y+ S + H + S+KPFWFPP W LHL+CPASSFLMG+SAWMVWA+GGFHRNP AL+LYL Q++FTVLWDP+VFG G G ++C G+F ++FGCM VFGKVNSV DL+KPCLAWIAFL IVNLKL+++ Sbjct: 1 MASNAIKQRDPTTTTTTMNNKRRSGGGSRRDKRMVMAKHGFRSLAIAVSLPLSLTLISMYLGLSLHTQQHAHHDD-ASRKPFWFPPSWVLHLLCPASSFLMGISAWMVWANGGFHRNPVALMLYLTQIMFTVLWDPLVFGFGTIRVGFIVCLGMFVALFGCMHVFGKVNSVAADLVKPCLAWIAFLSIVNLKLVYL 195
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MBU8|A0A4D6MBU8_VIGUN (Benzodiazapine receptor OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2938 PE=3 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 5.771e-76 Identity = 116/194 (59.79%), Postives = 142/194 (73.20%), Query Frame = 0 Query: 1 MDSANLKQRLTT-PDQSTSEHE-IKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 M S +LK RLT PD + +++ I K+ KR +MAKRGL+SL IAV+ PLS+ +LS + S + + S++PFWFPP WALH CPA+SFLMGL+AWMVWADGGFHRNPTALLLY +QLLF+VLWDP+VF GAT LMLC G+F S +GCM F VN + DLIKPCLAW+AFL I NLKLLF+ Sbjct: 1 MASNDLKHRLTPHPDTAANDNGMIGEKRQKRKVMAKRGLKSLAIAVTLPLSLTVLSACVGSFIARDDS-----LSSRRPFWFPPSWALHFTCPATSFLMGLAAWMVWADGGFHRNPTALLLYFIQLLFSVLWDPLVFAAGATRLSLMLCLGLFVSQYGCMHAFRSVNPIAADLIKPCLAWVAFLSIANLKLLFV 189
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4NXD0|A0A6A4NXD0_LUPAL (Peripheral-type benzodiazepine receptor OS=Lupinus albus OX=3870 GN=Lalb_Chr18g0047121 PE=3 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 5.458e-75 Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 0 Query: 1 MDSANLKQRLTTPDQSTSEHE-----IKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNH------NNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 M S LKQRLT +T ++ + K+DKRM MAKRG +SL IAV PLS+ LLSIY+ SS + H ++ ++ S +PFWF P W LHL+C ASSFLMG+SAWMVWADGGFH NP ALLLYL Q+LFT+LWDP+VFG+GAT GLM+C G+FG++ GCM VF ++NSV D KPCLA AFL +VN+KLLF+ Sbjct: 1 MASNELKQRLTQNPSTTMNNKKRNIGVGRKRDKRMAMAKRGFKSLAIAVFLPLSLTLLSIYLGSSLHTQQHAHYDDYDDGVVVPSTRPFWFTPSWVLHLMCLASSFLMGISAWMVWADGGFHTNPVALLLYLAQILFTLLWDPLVFGLGATRVGLMVCLGLFGALSGCMHVFRQLNSVAGDFTKPCLACAAFLSVVNVKLLFV 203
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A394DFT7|A0A394DFT7_LUPAN (Translocator protein homolog OS=Lupinus angustifolius OX=3871 GN=TanjilG_08113 PE=3 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.273e-73 Identity = 125/208 (60.10%), Postives = 150/208 (72.12%), Query Frame = 0 Query: 1 MDSANLKQRLTTPDQSTSEHEIKTK------------KDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSS----NHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192 M S LKQRLT D +T+ + K +DKRM+MAKRGLRSL IAVS PLS+ LLS+Y+ S + H++ M S KPFWFPP W LHL+CPASSFLMG+SAWMVWADGGFHRNP ALLLYL Q++FTVLWDP+VFG G G ++C G+F ++FGCM VFG+VNSV DLIKPCLAW AFL IVNLKL+++ Sbjct: 1 MPSNALKQRLTHDDPTTTTMNNQRKSGGGGGGGGSSRRDKRMVMAKRGLRSLSIAVSLPLSLTLLSMYLGLSLHTQPQPHTHDDNSM-ASTKPFWFPPSWVLHLLCPASSFLMGISAWMVWADGGFHRNPMALLLYLTQIMFTVLWDPLVFGFGTIRVGFIVCLGLFVALFGCMRVFGQVNSVAADLIKPCLAWTAFLSIVNLKLVYL 207
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4DIY7|A0A6P4DIY7_ARADU (Translocator protein homolog OS=Arachis duranensis OX=130453 GN=LOC107492491 PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 3.648e-72 Identity = 113/188 (60.11%), Postives = 136/188 (72.34%), Query Frame = 0 Query: 14 DQSTSEHEIKTKK-----------DKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLL 190 + +T H ++T K K+M MAKRGLRSL+IAV PLS+ L S YISSS S +NH+ K PFWFPP WALHL PAS FLMGLSAWMVWA+GGFH++P A++LY+ QLL TVLWDP+VFG GA+ G++LC G+FG ++GCM VF +VN V DLIKPCLAW AFL IVNLKLL Sbjct: 55 NSNTGSHTMQTPKQEEEQQQQPDGTKKMAMAKRGLRSLLIAVILPLSLTLFSAYISSSMSRANHH----MDHKTPFWFPPSWALHLTLPASGFLMGLSAWMVWAEGGFHKHPVAVVLYVAQLLLTVLWDPLVFGAGASRVGMVLCLGLFGCLYGCMRVFKQVNHVAADLIKPCLAWTAFLSIVNLKLL 238
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J5V2G9|A0A6J5V2G9_PRUAR (Translocator protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS34638 PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 5.293e-72 Identity = 116/197 (58.88%), Postives = 141/197 (71.57%), Query Frame = 0 Query: 1 MDSANLKQRLTT-PDQSTS-----EHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLF 191 MDS NLKQR T PD + + + K+KKD RM MAKRGLRSL IAV+ P+S++LL+IY+ S+ + GS KPFWFPPLWAL IC ASSFLMGLSAW+VWADGGFH+NPTAL LYL QL ++WDP+VFG GA GL++ G+FG+M C VF +N V DL+KP LAW+AFL IVNLKL+F Sbjct: 1 MDSQNLKQRRTDDPDTAAATTTMNKSNYKSKKDMRMDMAKRGLRSLAIAVAIPVSLHLLAIYLGST-------DNYPTGSSKPFWFPPLWALRFICMASSFLMGLSAWLVWADGGFHKNPTALPLYLAQLGLNLIWDPIVFGAGAPWVGLLVSMGMFGTMVACTRVFKNINPVAGDLMKPTLAWVAFLAIVNLKLVF 190 The following BLAST results are available for this feature:
BLAST of rna-XM_027332647.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 4
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1; organism=Cicer arietinum; type=mRNA; length=579bpback to top protein sequence of rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 >rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=192bpback to top mRNA from alignment at chr3:36422581..36424029+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1; organism=Cicer arietinum; type=mRNA; length=1449bp; location=Sequence derived from: chr3:36422581..36424029+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr3:36422581..36424029+ >rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1; organism=Cicer arietinum; type=CDS; length=579bp; location=Sequence derived from: chr3:36422581..36424029+ (Cicer arietinumback to top |