rna-XM_027332647.1

Transcript Overview
Namerna-XM_027332647.1
Unique Namerna-XM_027332647.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length579
Producttranslocator protein homolog, transcript variant X1
References
External references for this mRNA
DatabaseAccession
GeneID101510570
GenBankXM_027332647.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:36422581..36424029 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL081Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL121Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL332Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL430Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0389Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL299Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0568Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0619Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0753Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0759Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanR089Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancanR095Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancanR123Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0265Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1017Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0371Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0286Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0304Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR229Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR274Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR282Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR309Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canpvR176Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvrvR176Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR170Vicia faba cv. Tiffany genome v1.0Vicia faba
cantifR178Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR176Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvrvR206Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR186Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvrvR212Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR183Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR228Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR192Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR261Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR223Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR237Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR243Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR134Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR143Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR150Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR175Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR170Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuR188Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR197Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR211Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR194Pisum sativum Cameor genome v1aPisum sativum
canpsR223Pisum sativum Cameor genome v1aPisum sativum
canpsR238Pisum sativum Cameor genome v1aPisum sativum
avjcanL298Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL396Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL474Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR133Cicer arietinum
cancarR156Cicer arietinum
cancarR186Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101510570gene-LOC101510570_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027332647.1-1exon-XM_027332647.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027332647.1-2exon-XM_027332647.1-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027188448.1cds-XP_027188448.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027332647.1_CaCDCfrontier-NCBI_v1rna-XM_027332647.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027332647.1_CaCDCfrontier-NCBI_v1rna-XM_027332647.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
BLAST of rna-XM_027332647.1 vs. Araport11
Match: | (Symbols: ATTSPO, TSPO | TSPO(outer membrane tryptophan-rich sensory protein)-related | chr2:19568701-19569291 FORWARD LENGTH=196)

HSP 1 Score: 166.777 bits (421), Expect = 3.032e-52
Identity = 86/199 (43.22%), Postives = 120/199 (60.30%), Query Frame = 0
Query:    1 MDSANLKQR-------LTT---PDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKL 189
            MDS +++ R        TT     +  S  + K K+D++  MAKRGL+SL +AV+ P+ + L + Y   +  S  + N+    +K   W PPLW LH  C ASS LMGL+AW+VW DGGFH+ P AL LYL Q L  ++WDPV F VG+   GL +  G   ++FGC   F +++ V  +L+KPCLAW AF+  VN+KL
Sbjct:    1 MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGT--SDGYGNR----AKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193          
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.901e-51
Identity = 86/199 (43.22%), Postives = 120/199 (60.30%), Query Frame = 0
Query:    1 MDSANLKQR-------LTT---PDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKL 189
            MDS +++ R        TT     +  S  + K K+D++  MAKRGL+SL +AV+ P+ + L + Y   +  S  + N+    +K   W PPLW LH  C ASS LMGL+AW+VW DGGFH+ P AL LYL Q L  ++WDPV F VG+   GL +  G   ++FGC   F +++ V  +L+KPCLAW AF+  VN+KL
Sbjct:    1 MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGT--SDGYGNR----AKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193          
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|P50637|TSPO_MOUSE (Translocator protein OS=Mus musculus OX=10090 GN=Tspo PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.636e-8
Identity = 36/114 (31.58%), Postives = 52/114 (45.61%), Query Frame = 0
Query:   75 KKPFWFPPLWALHLICPASSFLMGLSAWMVWAD-GGFHRNP-TALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVN 186
            +KP W PP W L  I       MG  +++VW + GGF  +    L LY  QL     W P+ FG     + L     + G      L + +V+     L+ P LAW+AF  ++N
Sbjct:   38 QKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATVLN 151          
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|P30536|TSPO_HUMAN (Translocator protein OS=Homo sapiens OX=9606 GN=TSPO PE=1 SV=3)

HSP 1 Score: 52.373 bits (124), Expect = 1.425e-7
Identity = 41/148 (27.70%), Postives = 68/148 (45.95%), Query Frame = 0
Query:   41 IIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWAD-GGF-HRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVN 186
            + A+ F L+ +L   ++ S F       +   G +KP W PP W L  +       MG  +++VW + GGF  +    L LY  QL     W P+ FG     + L+    + G+     + + +V+ +   L+ P LAW+AF   +N
Sbjct:    6 VPAMGFTLAPSL-GCFVGSRFVHGE-GLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLN 151          
BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Match: sp|P16257|TSPO_RAT (Translocator protein OS=Rattus norvegicus OX=10116 GN=Tspo PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.624e-7
Identity = 35/114 (30.70%), Postives = 52/114 (45.61%), Query Frame = 0
Query:   75 KKPFWFPPLWALHLICPASSFLMGLSAWMVWAD-GGFHRNP-TALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVN 186
            +KP W PP W L  I       MG  ++++W + GGF       L LY  QL     W P+ FG     + L+    + G      L + +V+     L+ P LAW+AF  ++N
Sbjct:   38 QKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAMVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATMLN 151          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XTT4|A0A1S2XTT4_CICAR (Translocator protein homolog OS=Cicer arietinum OX=3827 GN=LOC101510570 PE=3 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 3.527e-136
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI
Sbjct:    1 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4XUM9|A0A9D4XUM9_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_030996 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 2.223e-91
Identity = 138/205 (67.32%), Postives = 160/205 (78.05%), Query Frame = 0
Query:    3 SANLKQRLTTPDQ---------------STSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            + +LKQR  TPDQ                TS H    K+DKRM MA RGLRSLIIAVSFPLS+ LLSIYI+SSF+ SNHNN+ +  S+KPFWFPP W LHL+ P+SSFLMGLSAW+VWA+G FHR+PTA LLYL+QLLFTVLW+PVVFGVGATS GL+LC GIFGS+ GCM VFGKVN    DLIKPCLA ++FLFIVNLKL++I
Sbjct:   48 TTDLKQRFVTPDQTTTTNTTTTNDDDKNGTSNH----KRDKRMAMATRGLRSLIIAVSFPLSLTLLSIYIASSFTFSNHNNESITSSRKPFWFPPSWLLHLMLPSSSFLMGLSAWLVWAEGAFHRDPTAFLLYLIQLLFTVLWEPVVFGVGATSLGLLLCLGIFGSLIGCMYVFGKVNPAASDLIKPCLAVVSFLFIVNLKLIYI 248          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|G7KRV8|G7KRV8_MEDTR (TSPO/MBR family protein OS=Medicago truncatula OX=3880 GN=11432520 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.948e-81
Identity = 138/195 (70.77%), Postives = 161/195 (82.56%), Query Frame = 0
Query:    3 SANLKQRLTTPDQ-----STSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            +A+LKQR  TPDQ     +     I  K+DK+M MAK GLRSLIIAVSFPLSI LLSIYISSSF+ SNHN +++ GSKKPFWFPP WALHL+ P+SSFLMGLSAWMVWA GGFHR+ TALLLYLLQ+L+TVLW+P+VF  GATSFGL++CFG F ++FGCM +F KVN V  +LIKPCLA IAFLFIVNLKL+FI
Sbjct:    6 TADLKQRNITPDQTTTTTNDRNGTISHKRDKKMKMAKGGLRSLIIAVSFPLSITLLSIYISSSFTFSNHNKEVITGSKKPFWFPPSWALHLLLPSSSFLMGLSAWMVWAAGGFHRDLTALLLYLLQILYTVLWNPLVFRFGATSFGLLVCFGNFVTLFGCMRLFKKVNPVAANLIKPCLALIAFLFIVNLKLIFI 200          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8LCS9|A0A8B8LCS9_ABRPR (Translocator protein homolog OS=Abrus precatorius OX=3816 GN=LOC113863646 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 5.528e-81
Identity = 124/192 (64.58%), Postives = 144/192 (75.00%), Query Frame = 0
Query:    1 MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            M S +LK R+T      + ++ K ++DKRM+MAKRGLRSL IAV  PLS+ +LS  I SS  S +  +  +   +KPFWFPP WALHL CPASSFLMGLSAWMVWADGGFHRNP ALLLY  QLLFTVLWDP+V G GAT  GLM+CFG+F S  GCM VF  +N +  DLIKPCL WIAFLFIVNLKLLF+
Sbjct:    1 MASNDLKHRITPNPGPDTMNDKKKRRDKRMVMAKRGLRSLAIAVFLPLSLTVLSACIGSSMHSQSRAHDAV-TWRKPFWFPPSWALHLTCPASSFLMGLSAWMVWADGGFHRNPMALLLYFTQLLFTVLWDPIVLGAGATRVGLMVCFGLFLSQVGCMRVFRPINPIAGDLIKPCLPWIAFLFIVNLKLLFV 191          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5P8Q6|A0A6A5P8Q6_LUPAL (Translocator protein homolog OS=Lupinus albus OX=3870 GN=Lal_00003872 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 4.212e-76
Identity = 116/196 (59.18%), Postives = 148/196 (75.51%), Query Frame = 0
Query:    1 MDSANLKQRLTTPDQSTSEHEIKT----KKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            M S  +KQR  T   +T  ++ ++    ++DKRM+MAK G RSL IAVS PLS+ L+S+Y+  S  +  H +     S+KPFWFPP W LHL+CPASSFLMG+SAWMVWA+GGFHRNP AL+LYL Q++FTVLWDP+VFG G    G ++C G+F ++FGCM VFGKVNSV  DL+KPCLAWIAFL IVNLKL+++
Sbjct:    1 MASNAIKQRDPTTTTTTMNNKRRSGGGSRRDKRMVMAKHGFRSLAIAVSLPLSLTLISMYLGLSLHTQQHAHHDD-ASRKPFWFPPSWVLHLLCPASSFLMGISAWMVWANGGFHRNPVALMLYLTQIMFTVLWDPLVFGFGTIRVGFIVCLGMFVALFGCMHVFGKVNSVAADLVKPCLAWIAFLSIVNLKLVYL 195          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MBU8|A0A4D6MBU8_VIGUN (Benzodiazapine receptor OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2938 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.771e-76
Identity = 116/194 (59.79%), Postives = 142/194 (73.20%), Query Frame = 0
Query:    1 MDSANLKQRLTT-PDQSTSEHE-IKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            M S +LK RLT  PD + +++  I  K+ KR +MAKRGL+SL IAV+ PLS+ +LS  + S  +  +        S++PFWFPP WALH  CPA+SFLMGL+AWMVWADGGFHRNPTALLLY +QLLF+VLWDP+VF  GAT   LMLC G+F S +GCM  F  VN +  DLIKPCLAW+AFL I NLKLLF+
Sbjct:    1 MASNDLKHRLTPHPDTAANDNGMIGEKRQKRKVMAKRGLKSLAIAVTLPLSLTVLSACVGSFIARDDS-----LSSRRPFWFPPSWALHFTCPATSFLMGLAAWMVWADGGFHRNPTALLLYFIQLLFSVLWDPLVFAAGATRLSLMLCLGLFVSQYGCMHAFRSVNPIAADLIKPCLAWVAFLSIANLKLLFV 189          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4NXD0|A0A6A4NXD0_LUPAL (Peripheral-type benzodiazepine receptor OS=Lupinus albus OX=3870 GN=Lalb_Chr18g0047121 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.458e-75
Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 0
Query:    1 MDSANLKQRLTTPDQSTSEHE-----IKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNH------NNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            M S  LKQRLT    +T  ++     +  K+DKRM MAKRG +SL IAV  PLS+ LLSIY+ SS  +  H      ++ ++  S +PFWF P W LHL+C ASSFLMG+SAWMVWADGGFH NP ALLLYL Q+LFT+LWDP+VFG+GAT  GLM+C G+FG++ GCM VF ++NSV  D  KPCLA  AFL +VN+KLLF+
Sbjct:    1 MASNELKQRLTQNPSTTMNNKKRNIGVGRKRDKRMAMAKRGFKSLAIAVFLPLSLTLLSIYLGSSLHTQQHAHYDDYDDGVVVPSTRPFWFTPSWVLHLMCLASSFLMGISAWMVWADGGFHTNPVALLLYLAQILFTLLWDPLVFGLGATRVGLMVCLGLFGALSGCMHVFRQLNSVAGDFTKPCLACAAFLSVVNVKLLFV 203          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A394DFT7|A0A394DFT7_LUPAN (Translocator protein homolog OS=Lupinus angustifolius OX=3871 GN=TanjilG_08113 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.273e-73
Identity = 125/208 (60.10%), Postives = 150/208 (72.12%), Query Frame = 0
Query:    1 MDSANLKQRLTTPDQSTSEHEIKTK------------KDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSS----NHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI 192
            M S  LKQRLT  D +T+    + K            +DKRM+MAKRGLRSL IAVS PLS+ LLS+Y+  S  +      H++  M  S KPFWFPP W LHL+CPASSFLMG+SAWMVWADGGFHRNP ALLLYL Q++FTVLWDP+VFG G    G ++C G+F ++FGCM VFG+VNSV  DLIKPCLAW AFL IVNLKL+++
Sbjct:    1 MPSNALKQRLTHDDPTTTTMNNQRKSGGGGGGGGSSRRDKRMVMAKRGLRSLSIAVSLPLSLTLLSMYLGLSLHTQPQPHTHDDNSM-ASTKPFWFPPSWVLHLLCPASSFLMGISAWMVWADGGFHRNPMALLLYLTQIMFTVLWDPLVFGFGTIRVGFIVCLGLFVALFGCMRVFGQVNSVAADLIKPCLAWTAFLSIVNLKLVYL 207          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4DIY7|A0A6P4DIY7_ARADU (Translocator protein homolog OS=Arachis duranensis OX=130453 GN=LOC107492491 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.648e-72
Identity = 113/188 (60.11%), Postives = 136/188 (72.34%), Query Frame = 0
Query:   14 DQSTSEHEIKTKK-----------DKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLL 190
            + +T  H ++T K            K+M MAKRGLRSL+IAV  PLS+ L S YISSS S +NH+       K PFWFPP WALHL  PAS FLMGLSAWMVWA+GGFH++P A++LY+ QLL TVLWDP+VFG GA+  G++LC G+FG ++GCM VF +VN V  DLIKPCLAW AFL IVNLKLL
Sbjct:   55 NSNTGSHTMQTPKQEEEQQQQPDGTKKMAMAKRGLRSLLIAVILPLSLTLFSAYISSSMSRANHH----MDHKTPFWFPPSWALHLTLPASGFLMGLSAWMVWAEGGFHKHPVAVVLYVAQLLLTVLWDPLVFGAGASRVGMVLCLGLFGCLYGCMRVFKQVNHVAADLIKPCLAWTAFLSIVNLKLL 238          
BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J5V2G9|A0A6J5V2G9_PRUAR (Translocator protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS34638 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.293e-72
Identity = 116/197 (58.88%), Postives = 141/197 (71.57%), Query Frame = 0
Query:    1 MDSANLKQRLTT-PDQSTS-----EHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSINLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLSAWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGIFGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLF 191
            MDS NLKQR T  PD + +     +   K+KKD RM MAKRGLRSL IAV+ P+S++LL+IY+ S+       +    GS KPFWFPPLWAL  IC ASSFLMGLSAW+VWADGGFH+NPTAL LYL QL   ++WDP+VFG GA   GL++  G+FG+M  C  VF  +N V  DL+KP LAW+AFL IVNLKL+F
Sbjct:    1 MDSQNLKQRRTDDPDTAAATTTMNKSNYKSKKDMRMDMAKRGLRSLAIAVAIPVSLHLLAIYLGST-------DNYPTGSSKPFWFPPLWALRFICMASSFLMGLSAWLVWADGGFHKNPTALPLYLAQLGLNLIWDPIVFGAGAPWVGLLVSMGMFGTMVACTRVFKNINPVAGDLMKPTLAWVAFLAIVNLKLVF 190          
The following BLAST results are available for this feature:
BLAST of rna-XM_027332647.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|3.032e-5243.22Symbols: ATTSPO, TSPO | TSPO(outer membrane trypto... [more]
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BLAST of rna-XM_027332647.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
sp|O82245|TSPO_ARATH2.901e-5143.22Translocator protein homolog OS=Arabidopsis thalia... [more]
sp|P50637|TSPO_MOUSE5.636e-831.58Translocator protein OS=Mus musculus OX=10090 GN=T... [more]
sp|P30536|TSPO_HUMAN1.425e-727.70Translocator protein OS=Homo sapiens OX=9606 GN=TS... [more]
sp|P16257|TSPO_RAT1.624e-730.70Translocator protein OS=Rattus norvegicus OX=10116... [more]
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BLAST of rna-XM_027332647.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XTT4|A0A1S2XTT4_CICAR3.527e-136100.00Translocator protein homolog OS=Cicer arietinum OX... [more]
tr|A0A9D4XUM9|A0A9D4XUM9_PEA2.223e-9167.32Uncharacterized protein OS=Pisum sativum OX=3888 G... [more]
tr|G7KRV8|G7KRV8_MEDTR2.948e-8170.77TSPO/MBR family protein OS=Medicago truncatula OX=... [more]
tr|A0A8B8LCS9|A0A8B8LCS9_ABRPR5.528e-8164.58Translocator protein homolog OS=Abrus precatorius ... [more]
tr|A0A6A5P8Q6|A0A6A5P8Q6_LUPAL4.212e-7659.18Translocator protein homolog OS=Lupinus albus OX=3... [more]
tr|A0A4D6MBU8|A0A4D6MBU8_VIGUN5.771e-7659.79Benzodiazapine receptor OS=Vigna unguiculata OX=39... [more]
tr|A0A6A4NXD0|A0A6A4NXD0_LUPAL5.458e-7557.64Peripheral-type benzodiazepine receptor OS=Lupinus... [more]
tr|A0A394DFT7|A0A394DFT7_LUPAN1.273e-7360.10Translocator protein homolog OS=Lupinus angustifol... [more]
tr|A0A6P4DIY7|A0A6P4DIY7_ARADU3.648e-7260.11Translocator protein homolog OS=Arachis duranensis... [more]
tr|A0A6J5V2G9|A0A6J5V2G9_PRUAR5.293e-7258.88Translocator protein homolog OS=Prunus armeniaca O... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:1.20.1260.100:FF:000001coord: 36..192
e-value: 3.3E-36
score: 126.1
IPR038330TspO/MBR-related superfamilyGENE3D1.20.1260.100TspO/MBR proteincoord: 38..191
e-value: 1.2E-24
score: 88.6
IPR004307TspO/MBR-related proteinPIRSFPIRSF005859PBRcoord: 29..192
e-value: 2.5E-34
score: 111.1
IPR004307TspO/MBR-related proteinPFAMPF03073TspO_MBRcoord: 55..189
e-value: 2.7E-24
score: 97.0
IPR004307TspO/MBR-related proteinPANTHERPTHR10057PERIPHERAL-TYPE BENZODIAZEPINE RECEPTORcoord: 24..190
IPR004307TspO/MBR-related proteinCDDcd15904TSPO_MBRcoord: 75..187
e-value: 5.23044E-21
score: 82.5448

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1; organism=Cicer arietinum; type=mRNA; length=579bp
ATGGATTCAGCAAACCTCAAACAACGACTCACCACACCCGATCAATCTAC
CAGTGAACATGAAATTAAAACCAAAAAAGACAAACGAATGATAATGGCAA
AACGCGGTCTTAGATCACTCATAATAGCAGTTTCCTTCCCTCTCTCAATT
AACCTTTTATCCATTTACATATCCTCTTCCTTTTCCTCCTCCAACCACAA
CAATAAAATCATGTTCGGTTCAAAAAAGCCCTTCTGGTTTCCACCTTTGT
GGGCCCTACACCTCATCTGTCCTGCTTCAAGCTTCTTAATGGGCCTTTCA
GCTTGGATGGTTTGGGCTGATGGTGGTTTTCATAGAAACCCAACTGCTTT
GTTGCTTTACTTGCTTCAGCTTCTCTTTACTGTGTTGTGGGACCCTGTTG
TTTTTGGAGTTGGAGCAACGAGTTTTGGATTGATGCTTTGTTTTGGAATT
TTTGGGAGCATGTTTGGGTGTATGCTTGTGTTTGGGAAGGTTAATTCGGT
TACACGTGATTTGATAAAGCCGTGTTTGGCTTGGATTGCTTTTCTTTTCA
TTGTAAATCTGAAGCTACTTTTTATCTGA
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protein sequence of rna-XM_027332647.1_CaCDCfrontier-NCBI_v1

>rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=192bp
MDSANLKQRLTTPDQSTSEHEIKTKKDKRMIMAKRGLRSLIIAVSFPLSI
NLLSIYISSSFSSSNHNNKIMFGSKKPFWFPPLWALHLICPASSFLMGLS
AWMVWADGGFHRNPTALLLYLLQLLFTVLWDPVVFGVGATSFGLMLCFGI
FGSMFGCMLVFGKVNSVTRDLIKPCLAWIAFLFIVNLKLLFI
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mRNA from alignment at chr3:36422581..36424029+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1; organism=Cicer arietinum; type=mRNA; length=1449bp; location=Sequence derived from: chr3:36422581..36424029+ (Cicer arietinum
ACTTCTCTCATTCTTTCAAACACAAATTATCTTCTCCAATGGATTCAGCA AACCTCAAACAACGACTCACCACACCCGATCAATCTACCAGTGAACATga aattaaaaccaaaaaagaCAAACGAATGATAATGGCAAAACGCGGTCTTA GATCACTCATAATAGCAGTTTCCTTCCCTCTCTCAATTAACCTTTTATCC ATTTACATATCCTCTTCCTTTTCCTCCTCCAACCACAACAATAAAATCAT GTTCGGTTCAAAAAAGCCCTTCTGGTTTCCACCTTTGTGGGCCCTACACC TCATCTGTCCTGCTTCAAGCTTCTTAATGGGCCTTTCAGCTTGGATGGTT TGGGCTGATGGTGGTTTTCATAGAAACCCAACTGCTTTGTTGCTTTACTT GCTTCAGCTTCTCTTTACTGTGTTGTGGGACCCTGTTGTTTTTGGAGTTG GAGCAACGAGTTTTGGATTGATGctttgttttggaatttttgggaGCATG TTTGGGTGTATGCTTGTGTTTGGGAAGGTTAATTCGGTTACACGTGATTT GATAAAGCCGTGTTTGGCTTGGATTGCTTTTCTTTTCATTGTAAATCTGA AGCTACTTTTTATCTGAAGAAAACATACACACCCAGCTTCATGTGTTGTG TTAGACACACACACTTggtgtaaataatatatatatNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNATGTTTTGTGTTAGACACACACACTCtgtgtatataatatatata tatatatatatatatatatatatatatatatatatatatatataccacta TTTTGTACTTTTTTAGATGTTTTGTAATTTTTACGTCCAAAGATGATTAG TGTATGTGCTAGATTTGGAGTGTAAATATATGTTCAGTCAAAGCAAAAAG AGTGTAAATATATAGATTGcatttttgtgtttttaatattatttccttTA GGACTGGGATTTGAACGaaataatatctttgtgtttgtttttattGTCA
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Coding sequence (CDS) from alignment at chr3:36422581..36424029+

>rna-XM_027332647.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332647.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332647.1; organism=Cicer arietinum; type=CDS; length=579bp; location=Sequence derived from: chr3:36422581..36424029+ (Cicer arietinum
ATGGATTCAGCAAACCTCAAACAACGACTCACCACACCCGATCAATCTAC
CAGTGAACATgaaattaaaaccaaaaaagaCAAACGAATGATAATGGCAA
AACGCGGTCTTAGATCACTCATAATAGCAGTTTCCTTCCCTCTCTCAATT
AACCTTTTATCCATTTACATATCCTCTTCCTTTTCCTCCTCCAACCACAA
CAATAAAATCATGTTCGGTTCAAAAAAGCCCTTCTGGTTTCCACCTTTGT
GGGCCCTACACCTCATCTGTCCTGCTTCAAGCTTCTTAATGGGCCTTTCA
GCTTGGATGGTTTGGGCTGATGGTGGTTTTCATAGAAACCCAACTGCTTT
GTTGCTTTACTTGCTTCAGCTTCTCTTTACTGTGTTGTGGGACCCTGTTG
TTTTTGGAGTTGGAGCAACGAGTTTTGGATTGATGctttgttttggaatt
tttgggaGCATGTTTGGGTGTATGCTTGTGTTTGGGAAGGTTAATTCGGT
TACACGTGATTTGATAAAGCCGTGTTTGGCTTGGATTGCTTTTCTTTTCA
TTGTAAATCTGAAGCTACTTTTTATCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR038330TspO/MBR-related_sf
IPR004307TspO_MBR
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane