rna-XM_027334153.1

Transcript Overview
Namerna-XM_027334153.1
Unique Namerna-XM_027334153.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length681
Productuncharacterized LOC113786371
References
External references for this mRNA
DatabaseAccession
GeneID113786371
GenBankXM_027334153.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:18812427..18813287 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL342Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0633Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0780Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0091Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1030Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
canccR0481Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR354Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR406Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR312Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR264Vicia faba cv. Tiffany genome v1.0Vicia faba
canpvR353Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvssR270Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuR266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR266Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsR284Pisum sativum Cameor genome v1aPisum sativum
canpsR329Pisum sativum Cameor genome v1aPisum sativum
avjcanL310Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR212Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Cr_10618.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
LR48_mrnaVigan02g272600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_008135Cajanus cajan Asha genome v1.0Cajanus cajan
Psat6g241760.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014656537.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr07.50Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.007G004800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg12888.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun07g292800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va02G073630.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.3g003480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.3g006200.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_13982Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_02028.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC113786371gene-LOC113786371_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027334153.1-1exon-XM_027334153.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027189954.1cds-XP_027189954.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027334153.1_CaCDCfrontier-NCBI_v1rna-XM_027334153.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027334153.1_CaCDCfrontier-NCBI_v1rna-XM_027334153.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_027334153.1 vs. Araport11
Match: | (Symbols: GAL3 | GAZ-LIKE 3 | chr5:7691494-7692468 REVERSE LENGTH=324)

HSP 1 Score: 82.0333 bits (201), Expect = 2.919e-18
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:  121 DGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDD 188
            DGR HSLP++KYGPYTC +C  VF TSQKFA H++S HYK ES E++ KRY +R + R   + Q + +
Sbjct:  232 DGRTHSLPYEKYGPYTCPKCNSVFDTSQKFAAHISSMHYKNESIEEKFKRYNARNKKRLRKRNQMIHE 299
[Close]
BLAST of rna-XM_027334153.1 vs. Araport11
Match: | (Symbols: GAZ | GA- AND ABA-RESPONSIVE ZINC FINGER | chr2:8020668-8021423 FORWARD LENGTH=251)

HSP 1 Score: 78.9518 bits (193), Expect = 1.621e-17
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 0 
Query:   47 LLPRGNANDTGDVASIRKSVHILEVQSGH-HDQP---PSPSPSPSPAPINNNDVIMATPIRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRS---NLQI----QKV--DDGI 190
            + P  N+ D       R+ +++  + S H HDQ       S +  P P       M+        D +  +K  +   DGRIHSLP+KKYGPYTC +C  +F TSQKFA H+ SSHYK E+ ++R +R+ +R + +    NL++    QK+  +DG+
Sbjct:   90 IFPHQNSGD-------RQYLNMFSLSSKHNHDQNVFHEGRSSTKIPKPT------MSIEKTTEYIDCEENEKSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHM-SSHYKSETNKERAQRFRARNKRKYRKLNLEVYGESQKIKQEDGV 232
[Close]
BLAST of rna-XM_027334153.1 vs. Araport11
Match: | (Symbols: GAZ | GA- AND ABA-RESPONSIVE ZINC FINGER | chr2:8020518-8021423 FORWARD LENGTH=301)

HSP 1 Score: 79.7221 bits (195), Expect = 1.904e-17
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 0 
Query:   47 LLPRGNANDTGDVASIRKSVHILEVQSGH-HDQP---PSPSPSPSPAPINNNDVIMATPIRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRS---NLQI----QKV--DDGI 190
            + P  N+ D       R+ +++  + S H HDQ       S +  P P       M+        D +  +K  +   DGRIHSLP+KKYGPYTC +C  +F TSQKFA H+ SSHYK E+ ++R +R+ +R + +    NL++    QK+  +DG+
Sbjct:  140 IFPHQNSGD-------RQYLNMFSLSSKHNHDQNVFHEGRSSTKIPKPT------MSIEKTTEYIDCEENEKSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHM-SSHYKSETNKERAQRFRARNKRKYRKLNLEVYGESQKIKQEDGV 282
[Close]
BLAST of rna-XM_027334153.1 vs. Araport11
Match: | (Symbols: GAL1 | GAZ-LIKE 1 | chr2:6856746-6857735 REVERSE LENGTH=329)

HSP 1 Score: 77.0258 bits (188), Expect = 2.519e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 0 
Query:  113 KKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNR 178
            +K  N + DGR HSLP++KYGPYTC +C  VF TSQKFA H+ SSHYK E+ E+R++R   R +N+
Sbjct:  222 EKSNNDHNDGRTHSLPYEKYGPYTCPKCNGVFNTSQKFAAHM-SSHYKNETSEEREQRI--RAKNK 284
[Close]
BLAST of rna-XM_027334153.1 vs. Araport11
Match: | (Symbols: GAL2 | GAZ-LIKE 2 | chr5:17088695-17089597 FORWARD LENGTH=300)

HSP 1 Score: 71.633 bits (174), Expect = 1.291e-14
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0 
Query:  121 DGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNR 178
            DGR HSLP+ KYGPYTC  C  VF TSQKFA H+  SHY  E++++R +R+ +R + R
Sbjct:  229 DGRTHSLPYTKYGPYTCPRCNGVFDTSQKFAAHML-SHYNNETDKERDQRFRARNKKR 285
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7X8I8|A0A3Q7X8I8_CICAR (Uncharacterized protein LOC113786371 OS=Cicer arietinum OX=3827 GN=LOC113786371 PE=4 SV=1)

HSP 1 Score: 468.003 bits (1203), Expect = 1.184e-166
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0 
Query:    1 MGSNEAFVGVSSTDVIFSSSSSPPPSPENENGRWICGYNTVTHTYHLLPRGNANDTGDVASIRKSVHILEVQSGHHDQPPSPSPSPSPAPINNNDVIMATPIRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVVAAAAAINDDQTIAVDPTPLPIPIKVKSEPQDSS 226
            MGSNEAFVGVSSTDVIFSSSSSPPPSPENENGRWICGYNTVTHTYHLLPRGNANDTGDVASIRKSVHILEVQSGHHDQPPSPSPSPSPAPINNNDVIMATPIRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVVAAAAAINDDQTIAVDPTPLPIPIKVKSEPQDSS
Sbjct:    1 MGSNEAFVGVSSTDVIFSSSSSPPPSPENENGRWICGYNTVTHTYHLLPRGNANDTGDVASIRKSVHILEVQSGHHDQPPSPSPSPSPAPINNNDVIMATPIRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVVAAAAAINDDQTIAVDPTPLPIPIKVKSEPQDSS 226
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|G7JBB9|G7JBB9_MEDTR (C2H2-type domain-containing protein OS=Medicago truncatula OX=3880 GN=MTR_3g084720 PE=4 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 8.820e-37
Identity = 97/222 (43.69%), Postives = 118/222 (53.15%), Query Frame = 0 
Query:   33 RWICGYNTVTHTY--------HLLPRGNANDTGDVASIRKSVHILEVQSGH--------HDQPPSPSPSPSPAPINNNDVIMATPIRAVAA-------DDKTTKKEKNKN-KDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGIT----VVAAA----AAINDDQTIAVDPTPLPIPIKVKSEP 222
            +W+ GYNT    Y             G  N       I K++ ILE Q GH                        N N+ +M T    VAA       +D   KK++N+N  DGRIHSLPHKKYGPY CS+C ++F TSQKFA HV+SSH K ESEE RKKRY+SR+R R  LQIQK++DG T    V+A      A +NDD    +  TPLP  IKVKSEP
Sbjct:    8 QWMHGYNTTLKIYTHSSFDYDSSSSVGTNNFGSHAPGILKAMEILETQFGHLHTSTSSSSSSININMNDDIIINNNKNNNMMMTMNTYVAASSHLDLHNDMRKKKKRNENINDGRIHSLPHKKYGPYPCSKCNKIFETSQKFANHVSSSHCKFESEEDRKKRYISRIRKRPRLQIQKLNDGTTTFVPVIACGDKSHAYVNDDGHNMIALTPLPNGIKVKSEP 229
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IXT0|A0A396IXT0_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0122071 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.821e-36
Identity = 94/215 (43.72%), Postives = 114/215 (53.02%), Query Frame = 0 
Query:   33 RWICGYNTVTHTY--------HLLPRGNANDTGDVASIRKSVHILEVQSGH--------HDQPPSPSPSPSPAPINNNDVIMATPIRAVAADDKTTKKEKNKN-KDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGIT----VVAAA----AAINDDQTIAVDPTPLPIPIKVKSEP 222
            +W+ GYNT    Y             G  N       I K++ ILE Q GH                        N N+ +M T    VAA       ++N+N  DGRIHSLPHKKYGPY CS+C ++F TSQKFA HV+SSH K ESEE RKKRY+SR+R R  LQIQK++DG T    V+A      A +NDD    +  TPLP  IKVKSEP
Sbjct:    8 QWMHGYNTTLKIYTHSSFDYDSSSSVGTNNFGSHAPGILKAMEILETQFGHLHTSTSSSSSSININMNDDIIINNNKNNNMMMTMNTYVAASSHLDLHKRNENINDGRIHSLPHKKYGPYPCSKCNKIFETSQKFANHVSSSHCKFESEEDRKKRYISRIRKRPRLQIQKLNDGTTTFVPVIACGDKSHAYVNDDGHNMIALTPLPNGIKVKSEP 222
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8MEY6|A0A8B8MEY6_ABRPR (Uncharacterized protein LOC113873287 OS=Abrus precatorius OX=3816 GN=LOC113873287 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.308e-23
Identity = 57/126 (45.24%), Postives = 77/126 (61.11%), Query Frame = 0 
Query:  121 DGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVV-----------------AAAAAINDDQTIAVD-PTPLP---IPIKVKSEPQDS 225
            DGRIHS P+KK GPYTC +C  VF TSQ+FA HV+SSHYK ES+ QRKKR M+++R +S  Q+ +V+DG+T V                  A   +   +  AV+  +PLP   + +K+K EP DS
Sbjct:  234 DGRIHSFPYKKNGPYTCPKCSHVFGTSQRFAAHVSSSHYKYESKAQRKKRLMAKIRGKS-FQLHRVNDGLTFVPVPSSKVVAAGNNSNHGGAMVKVEAVEVGAVEVASPLPGKELGVKIKLEPVDS 358
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151U7Z7|A0A151U7Z7_CAJCA (C2H2-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_008135 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.608e-23
Identity = 54/116 (46.55%), Postives = 80/116 (68.97%), Query Frame = 0 
Query:  109 DKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVV---AAAAAINDDQTIAVDPTPLPIPIKVKSE 221
            D   +  K +  DGRIHS P+KK GPYTC +C  VF TSQKFA HV+S+HYK E++ +RK+R +++VR R NL++Q+V+D +T+V   A +A  +++  I V P+P   P  +K+E
Sbjct:  202 DNVCENGKARRYDGRIHSYPYKKNGPYTCPKCDTVFYTSQKFAAHVSSNHYKYETKSERKQRLLAKVRGR-NLRLQQVNDALTMVPINAVSARNHNNNNIVVTPSP---PRVIKAE 313
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IJH9|A0A396IJH9_MEDTR (Putative transcription factor C2H2 family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0064011 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.532e-20
Identity = 83/236 (35.17%), Postives = 113/236 (47.88%), Query Frame = 0 
Query:   33 RWICGYNTVTHTYHLLPRGNANDTGDVA-SIRKSVHILEVQ-SGHHDQPPSPSPSPSPAPINNNDVIMATP---------------------------------IRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVVAAAAAINDDQTIAVD--------PTPLPIPIKVKSEPQDS 225
            +W+ GYNT   +       + N  G  A  I K++ +L+ Q    H   PS   S     INNN +++ T                                  IRA    +   KKE+  + DGR HSL H K GPYTC +C +V ATSQKFA H  S HYK ESEE++KKRYMSR+R R +L+ QK++DG T     A+++    ++V         P P    +KVK EP D+
Sbjct:    8 KWMYGYNTTKSS------ADTNGFGSHAPGIIKAMQMLDTQFENLHASSPS---SDRNDVINNNKMVLNTSSAFAHLDLLGGSSSHSQQPPSETNNIVATNGDEIRAFNNTNMKRKKEEIVD-DGRTHSLSHNKNGPYTCPKCNKVLATSQKFASHA-SIHYKSESEEEKKKRYMSRIRKRPDLRFQKLNDGTTTFVPIASVDQSHAVSVSYNNHNMSAPAPPLSGVKVKLEPADN 232
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445IUK6|A0A445IUK6_GLYSO (C2H2-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_028499 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.603e-20
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 0 
Query:  121 DGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVV 193
            DGR+HS P+KK GPYTC +C  VF TSQ+FA HV+SSHYK E++ +RKKR M+++R R NL+I+ V  G+TVV
Sbjct:  188 DGRMHSYPYKKNGPYTCPKCGHVFETSQRFAAHVSSSHYKYETKSERKKRLMAKIRKR-NLRIEWVSGGLTVV 259
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|C6TM62|C6TM62_SOYBN (C2H2-type domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.619e-20
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 0 
Query:  121 DGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVV 193
            DGR+HS P+KK GPYTC +C  VF TSQ+FA HV+SSHYK E++ +RKKR M+++R R NL+I+ V  G+TVV
Sbjct:  188 DGRMHSYPYKKNGPYTCPKCGHVFETSQRFAAHVSSSHYKYETKSERKKRLMAKIRKR-NLRIEWVSGGLTVV 259
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|I1LFI1|I1LFI1_SOYBN (C2H2-type domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_10G295200 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.653e-20
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 0 
Query:  121 DGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVV 193
            DGR+HS P+KK GPYTC +C  VF TSQ+FA HV+SSHYK E++ +RKKR M+++R R NL+I+ V  G+TVV
Sbjct:  188 DGRMHSYPYKKNGPYTCPKCGHVFETSQRFAAHVSSSHYKYETKSERKKRLMAKIRKR-NLRIEWVSGGLTVV 259
[Close]
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MYD7|A0A4D6MYD7_VIGUN (C2H2-type domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g709 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.064e-18
Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = 0 
Query:  106 AADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKFACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVVAAAAAINDDQTIA-------VDPTPLPIPIKVKSE 221
            A +D    ++     DGR+HS P+KK GPYTC +C  VF TSQ+FA HV+S HY+ E++ +RKKR M+++R RS L+++  +  +TVVA  A   +            V P   P+ +K+++E
Sbjct:  223 AVEDVCGGRDDESEYDGRMHSNPYKKNGPYTCPKCGCVFETSQRFAAHVSSRHYRYETKSERKKRMMAKIRRRS-LRLEWENGALTVVADDAPRTNSSVFGFAGNNTNVAPATAPVEVKIENE 344
The following BLAST results are available for this feature:
BLAST of rna-XM_027334153.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
|2.919e-1854.41Symbols: GAL3 | GAZ-LIKE 3 | chr5:7691494-7692468 ... [more]
|1.621e-1735.03Symbols: GAZ | GA- AND ABA-RESPONSIVE ZINC FINGER ... [more]
|1.904e-1735.03Symbols: GAZ | GA- AND ABA-RESPONSIVE ZINC FINGER ... [more]
|2.519e-1656.06Symbols: GAL1 | GAZ-LIKE 1 | chr2:6856746-6857735 ... [more]
|1.291e-1455.17Symbols: GAL2 | GAZ-LIKE 2 | chr5:17088695-1708959... [more]
back to top
BLAST of rna-XM_027334153.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_027334153.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7X8I8|A0A3Q7X8I8_CICAR1.184e-166100.00Uncharacterized protein LOC113786371 OS=Cicer arie... [more]
tr|G7JBB9|G7JBB9_MEDTR8.820e-3743.69C2H2-type domain-containing protein OS=Medicago tr... [more]
tr|A0A396IXT0|A0A396IXT0_MEDTR1.821e-3643.72Putative transcription factor C2H2 family OS=Medic... [more]
tr|A0A8B8MEY6|A0A8B8MEY6_ABRPR2.308e-2345.24Uncharacterized protein LOC113873287 OS=Abrus prec... [more]
tr|A0A151U7Z7|A0A151U7Z7_CAJCA6.608e-2346.55C2H2-type domain-containing protein OS=Cajanus caj... [more]
tr|A0A396IJH9|A0A396IJH9_MEDTR1.532e-2035.17Putative transcription factor C2H2 family OS=Medic... [more]
tr|A0A445IUK6|A0A445IUK6_GLYSO1.603e-2060.27C2H2-type domain-containing protein OS=Glycine soj... [more]
tr|C6TM62|C6TM62_SOYBN1.619e-2060.27C2H2-type domain-containing protein OS=Glycine max... [more]
tr|I1LFI1|I1LFI1_SOYBN1.653e-2060.27C2H2-type domain-containing protein OS=Glycine max... [more]
tr|A0A4D6MYD7|A0A4D6MYD7_VIGUN3.064e-1839.02C2H2-type domain-containing protein OS=Vigna ungui... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSRPIRSR602322-1PIRSR602322-1coord: 94..177
e-value: 1.5E-5
score: 17.9
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 135..163
score: 8.766628

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027334153.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334153.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334153.1; organism=Cicer arietinum; type=mRNA; length=681bp
ATGGGTTCCAATGAGGCGTTTGTTGGTGTTAGTAGCACCGATGTTATCTT
TTCTTCTTCGTCTTCTCCTCCCCCTTCTCCCGAAAATGAAAATGGAAGAT
GGATTTGTGGCTACAACACAGTTACTCATACATACCACCTTCTTCCTCGA
GGCAATGCCAATGACACTGGTGATGTCGCTTCAATTAGAAAATCCGTACA
TATATTAGAAGTTCAATCCGGTCACCATGATCAACCACCATCACCATCAC
CGTCGCCGTCACCGGCACCAATTAATAATAATGATGTAATAATGGCGACT
CCAATTCGTGCTGTTGCTGCTGATGATAAGACGACGAAGAAGGAGAAGAA
TAAGAATAAGGACGGTCGAATCCATAGTCTACCACACAAGAAATATGGAC
CGTACACGTGTTCAGAGTGCTATGAAGTGTTTGCTACTTCTCAGAAGTTT
GCTTGTCACGTGACGTCGAGTCACTACAAGGGAGAAAGTGAAGAACAGAG
AAAGAAAAGATATATGTCAAGAGTTCGAAACAGATCTAATCTTCAAATTC
AGAAGGTCGATGATGGAATCACTGTTGTTGCTGCTGCTGCTGCTATCAAT
GATGATCAGACCATTGCTGTTGATCCTACTCCTCTTCCAATTCCAATCAA
AGTAAAATCGGAGCCCCAAGATTCATCATGA
back to top

protein sequence of rna-XM_027334153.1_CaCDCfrontier-NCBI_v1

>rna-XM_027334153.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334153.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334153.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=226bp
MGSNEAFVGVSSTDVIFSSSSSPPPSPENENGRWICGYNTVTHTYHLLPR
GNANDTGDVASIRKSVHILEVQSGHHDQPPSPSPSPSPAPINNNDVIMAT
PIRAVAADDKTTKKEKNKNKDGRIHSLPHKKYGPYTCSECYEVFATSQKF
ACHVTSSHYKGESEEQRKKRYMSRVRNRSNLQIQKVDDGITVVAAAAAIN
DDQTIAVDPTPLPIPIKVKSEPQDSS
back to top

mRNA from alignment at chr4:18812427..18813287-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027334153.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334153.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334153.1; organism=Cicer arietinum; type=mRNA; length=861bp; location=Sequence derived from: chr4:18812427..18813287- (Cicer arietinum
TTCATTTCATTCTATTTCATTTCATTTTCATCGATGGGTTCCAATGAGGC
GTTTGTTGGTGTTAGTAGCACCGATGTTATCTTTTCTTCTTCGTCTTCTC
CTCCCCCTTCTCCCGAAAATGAAAATGGAAGATGGATTTGTGGCTACAAC
ACAGTTACTCATACATACCACCTTCTTCCTCGAGGCAATGCCAATGACAC
TGGTGATGTCGCTTCAATTAGAAAATCCGTACATATATTAGAAGTTCAAT
CCGGTCACCATGATCAACCACCATCACCATCACCGTCGCCGTCACCGGCA
CCAATTAATAATAATGATGTAATAATGGCGACTCCAATTCGTGCTGTTGC
TGCTGATGATAAGACGACGAAGAAGGAGAAGAATAAGAATAAGGACGGTC
GAATCCATAGTCTACCACACAAGAAATATGGACCGTACACGTGTTCAGAG
TGCTATGAAGTGTTTGCTACTTCTCAGAAGTTTGCTTGTCACGTGACGTC
GAGTCACTACAAGGGAGAAAGTGAAGAACAGAGAAAGAAAAGATATATGT
CAAGAGTTCGAAACAGATCTAATCTTCAAATTCAGAAGGTCGATGATGGA
ATCACTGTTGTTGCTGCTGCTGCTGCTATCAATGATGATCAGACCATTGC
TGTTGATCCTACTCCTCTTCCAATTCCAATCAAAGTAAAATCGGAGCCCC
AAGATTCATCATGAATTAATATTCAATCAACAGGCTGCATCAATTTTATT
TTCATGTTTAGTTCTGTACCAACTATTATTTTTCAATGCTTTTATTTCTT
TATTTATGTTCACCCGTTGATTTTCAATACTAAATCTCTCATCACAACTG
ATTTAAATGAA
back to top

Coding sequence (CDS) from alignment at chr4:18812427..18813287-

>rna-XM_027334153.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334153.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334153.1; organism=Cicer arietinum; type=CDS; length=681bp; location=Sequence derived from: chr4:18812427..18813287- (Cicer arietinum
ATGGGTTCCAATGAGGCGTTTGTTGGTGTTAGTAGCACCGATGTTATCTT
TTCTTCTTCGTCTTCTCCTCCCCCTTCTCCCGAAAATGAAAATGGAAGAT
GGATTTGTGGCTACAACACAGTTACTCATACATACCACCTTCTTCCTCGA
GGCAATGCCAATGACACTGGTGATGTCGCTTCAATTAGAAAATCCGTACA
TATATTAGAAGTTCAATCCGGTCACCATGATCAACCACCATCACCATCAC
CGTCGCCGTCACCGGCACCAATTAATAATAATGATGTAATAATGGCGACT
CCAATTCGTGCTGTTGCTGCTGATGATAAGACGACGAAGAAGGAGAAGAA
TAAGAATAAGGACGGTCGAATCCATAGTCTACCACACAAGAAATATGGAC
CGTACACGTGTTCAGAGTGCTATGAAGTGTTTGCTACTTCTCAGAAGTTT
GCTTGTCACGTGACGTCGAGTCACTACAAGGGAGAAAGTGAAGAACAGAG
AAAGAAAAGATATATGTCAAGAGTTCGAAACAGATCTAATCTTCAAATTC
AGAAGGTCGATGATGGAATCACTGTTGTTGCTGCTGCTGCTGCTATCAAT
GATGATCAGACCATTGCTGTTGATCCTACTCCTCTTCCAATTCCAATCAA
AGTAAAATCGGAGCCCCAAGATTCATCATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type