rna-XM_027334527.1

Transcript Overview
Namerna-XM_027334527.1
Unique Namerna-XM_027334527.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length528
ProductNADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like
References
External references for this mRNA
DatabaseAccession
GeneID113786610
GenBankXM_027334527.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:35934335..35935316 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ancanL0097Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0293Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL141Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0342Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL189Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL677Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0692Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0708Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL129Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0541Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0657Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR460Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR386Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR398Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvrvR408Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR342Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR353Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR358Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR370Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR493Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR384Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR428Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR314Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR351Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuaR384Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR391Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuR403Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjcanL484Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL676Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR320Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g226100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.2g173280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan07g259100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr08.386Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.001G033900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun08g036500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_02870.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va07G066230.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat05G0128500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.009G076900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va04G066400.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr09.1479Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.2g139720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014646823.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014647909.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg55177.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_009558Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_11998Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan04g237100Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_01631Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_15120.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC113786610gene-LOC113786610_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027334527.1-1exon-XM_027334527.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027190328.1cds-XP_027190328.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027334527.1_CaCDCfrontier-NCBI_v1rna-XM_027334527.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027334527.1_CaCDCfrontier-NCBI_v1rna-XM_027334527.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_027334527.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:3791148-3792929 REVERSE LENGTH=218)

HSP 1 Score: 172.94 bits (437), Expect = 1.024e-54
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 0 
Query:    1 MAFLNR-TSSRFSHLPSAQRVVS------LHTSLPSLS---TPTPYA-PPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA + R T++R   L  +QR V+      LHTSLP+LS   +PT Y  P PP ++  P  +SK AE+V+SKVD LMNWARTGSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 144
[Close]
BLAST of rna-XM_027334527.1 vs. Araport11
Match: | (Symbols: NdhK, PSBG | photosystem II reaction center protein G | chrc:49257-49934 REVERSE LENGTH=225)

HSP 1 Score: 86.2705 bits (212), Expect = 6.345e-21
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:   47 PVSISKTAEYVVSK-VDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            P+    T   V+S  ++ L NW+R  S+WP+ +G +CC +E     GSR+DFDR+G++ R SPRQ+D ++ +GT+T KMAP+L + + 
Sbjct:    7 PILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYE 94
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|P42027|NDUS7_BRAOL (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Brassica oleracea OX=3712 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.142e-57
Identity = 94/141 (66.67%), Postives = 109/141 (77.30%), Query Frame = 0 
Query:    1 MAFLNR-TSSRFSHLPSAQRVVS---LHTSLPSLS---TPTPYAPPPPPSASSPV-SISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA + R T++R   +  + R  +   LHTSLP+LS   TPT Y  P PPS S+P   +SKTAE+V+SKVD LMNWAR GSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MAMITRNTATRLPLVLQSHRAAAVSHLHTSLPALSPATTPTSYTRPGPPSTSAPPPGLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 141
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q43844|NDUS7_SOLTU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.606e-57
Identity = 88/139 (63.31%), Postives = 102/139 (73.38%), Query Frame = 0 
Query:    1 MAFLNRTSSRFSH-LPSAQRVVSLHTSLPSLS-----TPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA + R +   +   P  QR  ++HT+LPSLS     +P       PPS ++P  ISK AEYV+SKVD LMNWAR GSIWPMTFGLACCAVEMMH   +RYDFDRFGIIFRPSPRQSD MI++GTLTNKMAPALRK + 
Sbjct:    1 MALIARNAKLLTGTAPFLQRAATIHTTLPSLSQQPASSPATSGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYD 139
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q42577|NDUS7_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.803e-54
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 0 
Query:    1 MAFLNR-TSSRFSHLPSAQRVVS------LHTSLPSLS---TPTPYA-PPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA + R T++R   L  +QR V+      LHTSLP+LS   +PT Y  P PP ++  P  +SK AE+V+SKVD LMNWARTGSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 144
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|O21272|NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana OX=48483 GN=NAD10 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.551e-44
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 0 
Query:   55 EYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYF---SPPSLFLHSPSC 144
            E++VSK+D L+NWAR GS+WPMTFGLACCAVEMMH++ SRYD DRFGIIFRPSPRQSD MI++GTLTNKMAPALRK +   S P   +   SC
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSC 122
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q2W3I5|NUOB_MAGSA (NADH-quinone oxidoreductase subunit B OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.875e-41
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = 0 
Query:   23 LHTSLPSLSTPTPYAPPPPPSASSPVSISKTAE-----YVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYF---SPPSLFLHSPSC-----YYKLYFTTI 153
            ++ S   + +P   A  PP  A   +  + T E     +V++ VDA++NWARTGS+WPMTFGLACCAVEMMH   SRYD DRFG++FRPSPRQSD MI++GTLTNKMAPALR+ +   + P   +   SC     YY   ++ +
Sbjct:    1 MNPSAGGILSPDHAAALPPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVV 144
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q2GDX9|NUOB_NEOSM (NADH-quinone oxidoreductase subunit B OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyayama) OX=222891 GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.504e-41
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 0 
Query:   56 YVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYF---SPPSLFLHSPSC 144
            Y+V+K+D L+NWAR+GS+WPMTFGLACCAVEMMH + SRYD DRFG+IFRPSPRQSD MI++GTLTNKMAPALR+ +   + P   +   SC
Sbjct:   19 YLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSC 110
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q31HF9|NUOB_HYDCU (NADH-quinone oxidoreductase subunit B OS=Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=nuoB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.713e-41
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0 
Query:   57 VVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYF---SPPSLFLHSPSC 144
            V +  D L+NWARTGS+WPMTFGLACCAVEMMH   SRYD DRFGIIFRPSPRQSD MI++GTL NKMAPALRK +   + P   +   SC
Sbjct:   12 VTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSC 102
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q3J829|NUOB2_NITOC (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.259e-40
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0 
Query:   57 VVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYF---SPPSLFLHSPSC 144
            V +  D L+NWARTGS+WPMTFGLACCAVEMMH   SRYD DRFG+IFRPSPRQSD MI++GTL NKMAPALRK +   S P   +   SC
Sbjct:   12 VTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSC 102
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CB83|NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii OX=9601 GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.305e-40
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0 
Query:   12 SHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            S + +A +   +H S+ +   P+   P  P + +     S   EYVV+K+D L+NWAR  S+WPMTFGLACCAVEMMH +  RYD DRFG++FR SPRQSD MI++GTLTNKMAPALRK + 
Sbjct:   19 SSVGTAVQAQGVHQSVAT-DGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYD 139
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q0MQI0|NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes OX=9598 GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.363e-40
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 0 
Query:   22 SLHTSLPSLSTPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            S+H S+ +   P+   P  P + +     S   EYVV+K+D L+NWAR  S+WPMTFGLACCAVEMMH +  RYD DRFG++FR SPRQSD MI++GTLTNKMAPALRK + 
Sbjct:   29 SVHQSVAT-DGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYD 139
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XRQ6|A0A3Q7XRQ6_CICAR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like OS=Cicer arietinum OX=3827 GN=LOC113786610 PE=4 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 1.264e-125
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 
Query:    1 MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFSPPSLFLHSPSCYYKLYFTTITMHEMKSQHVDKKQLVGVIRLI 175
            MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFSPPSLFLHSPSCYYKLYFTTITMHEMKSQHVDKKQLVGVIRLI
Sbjct:    1 MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFSPPSLFLHSPSCYYKLYFTTITMHEMKSQHVDKKQLVGVIRLI 175
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y9G8|A0A1S2Y9G8_CICAR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Cicer arietinum OX=3827 GN=LOC101513804 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 9.026e-64
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 0 
Query:    2 AFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            AFL RTSSRFSHLPS  RVVSLHT+LPSLSTPTPYAPPPPPSA+SPVS+SKTAEYV+SKVD LMNWAR GSIWP+TFGLACCAVEMMHT G+RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    3 AFLTRTSSRFSHLPSPHRVVSLHTTLPSLSTPTPYAPPPPPSATSPVSVSKTAEYVISKVDDLMNWARRGSIWPLTFGLACCAVEMMHTGGARYDMDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 134
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N2P5|A0A2K3N2P5_TRIPR (NADH dehydrogenase (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g020551 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.773e-63
Identity = 111/131 (84.73%), Postives = 117/131 (89.31%), Query Frame = 0 
Query:    1 MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYA--PPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALR 129
            MAFL RTSSRFS L S QRVVSLHT+LPSLS+ TP    PPPPPSASSPV ISKTAEYV+SKVD LMNWAR GSIWPMTFGLACCAVEMMHT G+RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALR
Sbjct:    1 MAFLTRTSSRFSQLASPQRVVSLHTTLPSLSSTTPTPYAPPPPPSASSPVGISKTAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALR 131
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A438K924|A0A438K924_VITVI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Vitis vinifera OX=29760 GN=NDUS7_0 PE=4 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 4.226e-63
Identity = 97/136 (71.32%), Postives = 112/136 (82.35%), Query Frame = 0 
Query:    1 MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLST----PTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYF 132
            MA L RTS R + L S QR+ +LHT+LPSLS+    P PY+  PPPS++SP  +SK AE+V+SKVD L+NWAR GSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK F
Sbjct:    1 MALLTRTS-RLA-LTSPQRIAALHTTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKAF 134
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6N5B7|A0A2Z6N5B7_TRISU (NADH:ubiquinone oxidoreductase-like 20kDa subunit domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_315400 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 6.233e-63
Identity = 105/135 (77.78%), Postives = 113/135 (83.70%), Query Frame = 0 
Query:    1 MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSP--VSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MAFL RTSSRFS L S QRVVSLHT+LPSLS+ TP    PP   S+   V ISKTAEYV+SKVD LMNWAR GSIWPMTFGLACCAVEMMHT G+RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MAFLTRTSSRFSQLASPQRVVSLHTTLPSLSSTTPTPYAPPLPPSASSPVGISKTAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 135
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BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2P5EKX5|A0A2P5EKX5_TREOI (NADH-ubiquinone oxidoreductase, 20 Kd subunit OS=Trema orientale OX=63057 GN=TorRG33x02_180360 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.043e-62
Identity = 99/144 (68.75%), Postives = 111/144 (77.08%), Query Frame = 0 
Query:    1 MAFLNRTSSRFS-HLPSAQRVVSLHTSLPSLST----------PTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA L R +SR    L SAQR + LHT++PSLS+          PT YA  PPPSA+SP  ISK AE+V+SKVD LMNWAR GSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MALLTRNASRLPLQLASAQRALGLHTTVPSLSSSATAGGGGTAPTTYARAPPPSATSPAGISKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 144
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BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A803NG38|A0A803NG38_CANSA (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.823e-62
Identity = 97/138 (70.29%), Postives = 110/138 (79.71%), Query Frame = 0 
Query:    1 MAFLNRTSSRFS--HLPSAQRVVSLHTSLPSLST------PTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRK 130
            MA L R S+      L SAQR ++LHT++PSLS+      PT YA  PPPSA+SP  +SK AE+V+SKVD LMNWAR GSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK
Sbjct:    1 MAHLARNSAHRIPFQLGSAQRAIALHTTVPSLSSTGTSSAPTTYARAPPPSATSPAGVSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRK 138
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BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2R6PIQ0|A0A2R6PIQ0_ACTCC (NADH dehydrogenase [ubiquinone] iron-sulfur protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc29101 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.284e-61
Identity = 96/136 (70.59%), Postives = 110/136 (80.88%), Query Frame = 0 
Query:    1 MAFLNRTSSRFSHLPSAQRVVSLHTSLPSL---STPTPYAPPPPPSASSPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA L R S R + L ++QR  ++HT+LPSL   S PTPY  PPP SASSP  +SK AE+V+SKVD LMNWAR GSIWPMTFGLACCAVEMMHT  +RYD DRFG+IFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MALLARNSHRMT-LIASQRAATIHTTLPSLAQPSHPTPYTAPPPMSASSPAGMSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 135
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BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0D2PRF1|A0A0D2PRF1_GOSRA (NADH:ubiquinone oxidoreductase-like 20kDa subunit domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G023500 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.531e-61
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 0 
Query:    1 MAFLNRTSS-RFSHLPSAQRVVSLHTSLPSLS---TPTPYAPPPPPSAS-SPVSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            MA + RT++ R  HL S QR +++HT++PSLS   TPT YA P PPS S +P S+SK AEYV+SKVD L+NWAR GSIWPMTFGLACCAVEMMH   SRYDFDRFG+IFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    1 MALITRTTANRLPHLLSLQRALAIHTTVPSLSSSATPTTYARPSPPSTSGTPSSLSKPAEYVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 138
[Close]
BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Match: tr|B7FN31|B7FN31_MEDTR (NADH:ubiquinone oxidoreductase-like 20kDa subunit domain-containing protein (Fragment) OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.724e-61
Identity = 103/134 (76.87%), Postives = 112/134 (83.58%), Query Frame = 0 
Query:    2 AFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSP--VSISKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRFGIIFRPSPRQSDCMIISGTLTNKMAPALRKYFS 133
            AFL RTSSRFS L S QR+ SLHT+LPSLS+ TP    PPP  S+   V ISKTAEYV+SKVD LMNWARTGSIWPMTFGLACCAVEMMHT  +RYD DRFGIIFRPSPRQSDCMI++GTLTNKMAPALRK + 
Sbjct:    3 AFLTRTSSRFSQLSSPQRIASLHTTLPSLSSTTPTPYAPPPLPSTTSPVGISKTAEYVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 136
The following BLAST results are available for this feature:
BLAST of rna-XM_027334527.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|1.024e-5465.28Symbols: no symbol available | no full name availa... [more]
|6.345e-2142.05Symbols: NdhK, PSBG | photosystem II reaction cent... [more]
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BLAST of rna-XM_027334527.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|P42027|NDUS7_BRAOL1.142e-5766.67NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
sp|Q43844|NDUS7_SOLTU9.606e-5763.31NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
sp|Q42577|NDUS7_ARATH9.803e-5465.28NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
sp|O21272|NDUS7_RECAM4.551e-4470.97NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
sp|Q2W3I5|NUOB_MAGSA1.875e-4149.31NADH-quinone oxidoreductase subunit B OS=Magnetosp... [more]
sp|Q2GDX9|NUOB_NEOSM2.504e-4167.39NADH-quinone oxidoreductase subunit B OS=Neoricket... [more]
sp|Q31HF9|NUOB_HYDCU7.713e-4168.13NADH-quinone oxidoreductase subunit B OS=Hydrogeno... [more]
sp|Q3J829|NUOB2_NITOC1.259e-4068.13NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
sp|P0CB83|NDUS7_PONAB1.305e-4054.10NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
sp|Q0MQI0|NDUS7_PANTR1.363e-4058.04NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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BLAST of rna-XM_027334527.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7XRQ6|A0A3Q7XRQ6_CICAR1.264e-125100.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
tr|A0A1S2Y9G8|A0A1S2Y9G8_CICAR9.026e-6486.36NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
tr|A0A2K3N2P5|A0A2K3N2P5_TRIPR1.773e-6384.73NADH dehydrogenase (Fragment) OS=Trifolium pratens... [more]
tr|A0A438K924|A0A438K924_VITVI4.226e-6371.32NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
tr|A0A2Z6N5B7|A0A2Z6N5B7_TRISU6.233e-6377.78NADH:ubiquinone oxidoreductase-like 20kDa subunit ... [more]
tr|A0A2P5EKX5|A0A2P5EKX5_TREOI1.043e-6268.75NADH-ubiquinone oxidoreductase, 20 Kd subunit OS=T... [more]
tr|A0A803NG38|A0A803NG38_CANSA2.823e-6270.29Uncharacterized protein OS=Cannabis sativa OX=3483... [more]
tr|A0A2R6PIQ0|A0A2R6PIQ0_ACTCC1.284e-6170.59NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
tr|A0A0D2PRF1|A0A0D2PRF1_GOSRA1.531e-6170.29NADH:ubiquinone oxidoreductase-like 20kDa subunit ... [more]
tr|B7FN31|B7FN31_MEDTR1.724e-6176.87NADH:ubiquinone oxidoreductase-like 20kDa subunit ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.12280coord: 45..134
e-value: 1.9E-36
score: 126.8
NoneNo IPR availablePANTHERPTHR11995NADH DEHYDROGENASEcoord: 46..132
NoneNo IPR availableSUPERFAMILY56770HydA/Nqo6-likecoord: 55..131

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027334527.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334527.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334527.1; organism=Cicer arietinum; type=mRNA; length=528bp
ATGGCTTTTCTGAATCGAACATCATCACGTTTCTCTCATCTACCATCAGC
ACAACGCGTAGTTTCTCTCCACACAAGCCTCCCTTCTCTATCGACACCTA
CACCTTATGCTCCACCACCTCCCCCATCGGCTAGTTCCCCCGTGAGCATT
TCGAAGACGGCGGAGTATGTTGTCTCAAAGGTAGATGCTCTCATGAATTG
GGCTCGTACTGGTTCCATCTGGCCCATGACATTTGGACTCGCTTGTTGTG
CTGTCGAAATGATGCATACTAGTGGCTCTCGTTACGATTTTGATCGATTT
GGTATCATTTTCAGGCCTAGTCCTCGTCAATCTGATTGCATGATTATTTC
TGGTACTCTCACCAATAAAATGGCTCCAGCACTTCGCAAGTACTTTTCTC
CCCCTTCTCTTTTTTTACATTCACCTTCTTGCTATTATAAGCTTTATTTT
ACTACTATCACTATGCATGAAATGAAGTCACAACATGTAGATAAAAAACA
ACTGGTAGGAGTAATTAGATTAATCTAA
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protein sequence of rna-XM_027334527.1_CaCDCfrontier-NCBI_v1

>rna-XM_027334527.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334527.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334527.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=175bp
MAFLNRTSSRFSHLPSAQRVVSLHTSLPSLSTPTPYAPPPPPSASSPVSI
SKTAEYVVSKVDALMNWARTGSIWPMTFGLACCAVEMMHTSGSRYDFDRF
GIIFRPSPRQSDCMIISGTLTNKMAPALRKYFSPPSLFLHSPSCYYKLYF
TTITMHEMKSQHVDKKQLVGVIRLI
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mRNA from alignment at chr5:35934335..35935316+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027334527.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334527.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334527.1; organism=Cicer arietinum; type=mRNA; length=982bp; location=Sequence derived from: chr5:35934335..35935316+ (Cicer arietinum
TAGCGAGCGTACCAATAAAAGTGGATGGAATTGACCAAGTAAGATGCATC
ATTTGTGCTATTCTTCCTGTGgtttatttgtttgttatttttgaaACGAC
TCACAAAAAAGGGGAAAAAAAAGTTGCACGAGTTTTTCTAAGCACAGGTT
CATGCTTTTCTCCCGATTTTTTATTCGTGATATGAAgcatttctaaaaaa
aataaataaaaaataaaaaaacttgtgTGATGGAATTGTTGTTCCAATAA
ACAGAAACAGAAGCAGAAGCAACGTTGCGATGGCTTTTCTGAATCGAACA
TCATCACGTTTCTCTCATCTACCATCAGCACAACGCGTAGTTTCTCTCCA
CACAAGCCTCCCTTCTCTATCGACACCTACACCTTATGCTCCACCACCTC
CCCCATCGGCTAGTTCCCCCGTGAGCATTTCGAAGACGGCGGAGTATGTT
GTCTCAAAGGTAGATGCTCTCATGAATTGGGCTCGTACTGGTTCCATCTG
GCCCATGACATTTGGACTCGCTTGTTGTGCTGTCGAAATGATGCATACTA
GTGGCTCTCGTTACGATTTTGATCGATTTGGTATCATTTTCAGGCCTAGT
CCTCGTCAATCTGATTGCATGATTATTTCTGGTACTCTCACCAATAAAAT
GGCTCCAGCACTTCGCAAGTACTTTTCTCCCCCTTCTCTTTTTTTACATT
CACCTTCTTGCTATTATAAGCTTTATTTTACTACTATCACTATGCATGAA
ATGAAGTCACAACATGTAGATAAAAAACAACTGGTAGGAGTAATTAGATT
AATCTAATCAGAGAAAACATAGATCTATCAGCAATTAGAGGTTTGAGACA
ATGTAGCTTTGGTTGCGGACGTGAACACACTACAACAAAATGTGAAAATG
AAAGCCATATATGTTGAGAAACATAGTTCAATTTAATAAAGTGGAAAATT
AAATGAGAGcataattaatctttttaattGAT
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Coding sequence (CDS) from alignment at chr5:35934335..35935316+

>rna-XM_027334527.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027334527.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027334527.1; organism=Cicer arietinum; type=CDS; length=528bp; location=Sequence derived from: chr5:35934335..35935316+ (Cicer arietinum
ATGGCTTTTCTGAATCGAACATCATCACGTTTCTCTCATCTACCATCAGC
ACAACGCGTAGTTTCTCTCCACACAAGCCTCCCTTCTCTATCGACACCTA
CACCTTATGCTCCACCACCTCCCCCATCGGCTAGTTCCCCCGTGAGCATT
TCGAAGACGGCGGAGTATGTTGTCTCAAAGGTAGATGCTCTCATGAATTG
GGCTCGTACTGGTTCCATCTGGCCCATGACATTTGGACTCGCTTGTTGTG
CTGTCGAAATGATGCATACTAGTGGCTCTCGTTACGATTTTGATCGATTT
GGTATCATTTTCAGGCCTAGTCCTCGTCAATCTGATTGCATGATTATTTC
TGGTACTCTCACCAATAAAATGGCTCCAGCACTTCGCAAGTACTTTTCTC
CCCCTTCTCTTTTTTTACATTCACCTTCTTGCTATTATAAGCTTTATTTT
ACTACTATCACTATGCATGAAATGAAGTCACAACATGTAGATAAAAAACA
ACTGGTAGGAGTAATTAGATTAATCTAA
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