rna-XM_027335399.1

Transcript Overview
Namerna-XM_027335399.1
Unique Namerna-XM_027335399.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length714
Productuncharacterized LOC101503228, transcript variant X3
References
External references for this mRNA
DatabaseAccession
GeneID101503228
GenBankXM_027335399.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6chromosomechr6:18398227..18403063 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascanL202Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL204Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL202Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0433Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0439Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL252Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0485Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0487Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascanL628Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL344Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0892Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL166Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancanR194Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0713Cicer arietinum ICC 4958 genome v2Cicer arietinum
caicanL0969Cicer arietinum ICC 4958 genome v2Cicer arietinum
cancrR591Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canccR0906Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR620Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR638Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR473Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR388Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR406Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR431Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR524Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR450Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR468Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR486Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR571Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canpvR583Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canpvR635Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR529Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR553Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR587Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR367Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR424Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canzwsR410Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR417Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR441Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR460Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuR467Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR489Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR531Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR469Pisum sativum Cameor genome v1aPisum sativum
canpsR503Pisum sativum Cameor genome v1aPisum sativum
canpsR512Pisum sativum Cameor genome v1aPisum sativum
canpsR524Pisum sativum Cameor genome v1aPisum sativum
canpsR565Pisum sativum Cameor genome v1aPisum sativum
avjcanL249Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL519Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL630Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR409Cicer arietinum
cancarR416Cicer arietinum
cancarR450Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101503228gene-LOC101503228_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027335399.1-4exon-XM_027335399.1-4_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027335399.1-3exon-XM_027335399.1-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027335399.1-2exon-XM_027335399.1-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027335399.1-1exon-XM_027335399.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027191200.1cds-XP_027191200.1_CaCDCfrontier-NCBI_v1_4Cicer arietinumCDS
cds-XP_027191200.1cds-XP_027191200.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_027191200.1cds-XP_027191200.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_027191200.1cds-XP_027191200.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027335399.1_CaCDCfrontier-NCBI_v1rna-XM_027335399.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027335399.1_CaCDCfrontier-NCBI_v1rna-XM_027335399.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YFW5|A0A3Q7YFW5_CICAR (Uncharacterized protein LOC101503228 isoform X3 OS=Cicer arietinum OX=3827 GN=LOC101503228 PE=4 SV=1)

HSP 1 Score: 495.738 bits (1275), Expect = 2.437e-177
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTTVGYLRWLIYWLFHTALYRATMIHEPLF 237
            MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTTVGYLRWLIYWLFHTALYRATMIHEPLF
Sbjct:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTTVGYLRWLIYWLFHTALYRATMIHEPLF 237
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YIV1|A0A1S2YIV1_CICAR (Uncharacterized protein LOC101503228 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101503228 PE=4 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 2.806e-154
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT
Sbjct:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XCC5|A0A3Q7XCC5_CICAR (Uncharacterized protein LOC101503228 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101503228 PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 2.690e-150
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFP  SRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT
Sbjct:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFP--SRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 208
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LSL9|A0A2Z6LSL9_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_95410 PE=4 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 6.883e-105
Identity = 159/213 (74.65%), Postives = 175/213 (82.16%), Query Frame = 0 
Query:    1 MEANLRIRR---DLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            ME +L +R     LHS  FPS PESFPELTRSGS S      DSSATSVDNTSR+ A F D SRRWTDQLH LY++SLEASFVN+LHHSIHL G  FHNN +EAYKCRTLQNTP MP QSLALQDG QKK +LEKIAPMLES ADSHVLAG+  G AMVDKAC+LREP TYDHGLLCD+EI+ASGS+A ANRSA+SC +KQCSFH ESGCS+T
Sbjct:    1 MEEDLSLRHHLHRLHSSTFPSDPESFPELTRSGSYS------DSSATSVDNTSRDTASFLDTSRRWTDQLHKLYLNSLEASFVNELHHSIHLRGRRFHNNAEEAYKCRTLQNTPTMPRQSLALQDGFQKKINLEKIAPMLESAADSHVLAGSQPGFAMVDKACSLREPITYDHGLLCDKEINASGSSASANRSAKSCLEKQCSFHEESGCSST 207
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|G7JL76|G7JL76_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11443438 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 2.570e-104
Identity = 156/210 (74.29%), Postives = 173/210 (82.38%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            ME +L +R +LHSP FPS  E    LTRS S S      DSSAT+ DNTS +AAPF DQSRRWTDQLH  Y+SSLEASFVN+LH SIHL GWSFHN  DEAYKC+TLQNTP+MP QSLALQDGCQKK  LEKIA MLES ADSHV+AG+ LG+A VDKAC+LREP+TYDHGLLC EEIHASGS+AFANRSARSC +KQC+FHAES CSTT
Sbjct:    1 MEQDLPLRHNLHSPTFPSDLE----LTRSASFS------DSSATTTDNTSGDAAPFQDQSRRWTDQLHKSYLSSLEASFVNELHRSIHLRGWSFHNRADEAYKCKTLQNTPSMPRQSLALQDGCQKKIKLEKIATMLESAADSHVVAGSELGVATVDKACSLREPNTYDHGLLCKEEIHASGSSAFANRSARSCVEKQCTFHAESDCSTT 200
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4VQA3|A0A9D4VQA3_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_073208 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 7.278e-88
Identity = 147/211 (69.67%), Postives = 161/211 (76.30%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKK-TSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            ME +LR  RD HSP       +FPELTRSG         DSSAT VD      APF DQSRRWTDQLH LY+SSLEASFVN+LH SIHL GWSFHNN DE YKC T     +MP QSLALQDGCQKK +SLEKIAP+LESTADSHVL G+  G AM+DKACNLREP TYDHGLL D+EIHASGS++FAN+SARS  +KQCSFH ESGCSTT
Sbjct:   82 MEEDLR--RDFHSP-------TFPELTRSGVHY------DSSATIVD-----IAPFQDQSRRWTDQLHKLYLSSLEASFVNELHRSIHLRGWSFHNNDDETYKCIT-----DMPRQSLALQDGCQKKISSLEKIAPVLESTADSHVLTGSEPGDAMLDKACNLREPCTYDHGLLSDQEIHASGSSSFANKSARSYLEKQCSFHGESGCSTT 267
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4ZYN2|A0A9D4ZYN2_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_073208 PE=4 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 3.592e-85
Identity = 146/211 (69.19%), Postives = 160/211 (75.83%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSREAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKK-TSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            ME +LR  RD HSP       +FPELTRSG         DSSAT VD      APF  QSRRWTDQLH LY+SSLEASFVN+LH SIHL GWSFHNN DE YKC T     +MP QSLALQDGCQKK +SLEKIAP+LESTADSHVL G+  G AM+DKACNLREP TYDHGLL D+EIHASGS++FAN+SARS  +KQCSFH ESGCSTT
Sbjct:   82 MEEDLR--RDFHSP-------TFPELTRSGVHY------DSSATIVD-----IAPF--QSRRWTDQLHKLYLSSLEASFVNELHRSIHLRGWSFHNNDDETYKCIT-----DMPRQSLALQDGCQKKISSLEKIAPVLESTADSHVLTGSEPGDAMLDKACNLREPCTYDHGLLSDQEIHASGSSSFANKSARSYLEKQCSFHGESGCSTT 265
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N3V2|A0A2K3N3V2_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g020929 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.587e-79
Identity = 117/153 (76.47%), Postives = 130/153 (84.97%), Query Frame = 0 
Query:   58 DQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCSFHAESGCSTT 210
            D SRRWTDQLH LY+SSLEASFVN+LHHSIHL G  FHNN DEAYKCR LQNTP MP QSLALQDG Q+K +LEKIAPMLES ADSHVLAG+  G AMVDK C+LREP TYDHGL  ++EIHASGS+  ANRSA+SC +KQCSF+ ESGCS+T
Sbjct:    1 DTSRRWTDQLHKLYLSSLEASFVNELHHSIHLRGRRFHNNADEAYKCRALQNTPTMPRQSLALQDGFQEKINLEKIAPMLESAADSHVLAGSEPGFAMVDKVCSLREPITYDHGLFRNKEIHASGSSPSANRSAKSCLEKQCSFNEESGCSST 153
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8KTU6|A0A8B8KTU6_ABRPR (Uncharacterized protein LOC113858758 isoform X2 OS=Abrus precatorius OX=3816 GN=LOC113858758 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.607e-73
Identity = 129/257 (50.19%), Postives = 163/257 (63.42%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSRE------AAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQ--CS----------------FHAESGCSTTVGYLRWLIYWLFHTALYRATMIH 233
            ME +LR    LHSPPF S P+S PE TRS S S        SA +VD  S++       APF DQS RWTD+ HS Y+SSLEASFVN+LH S+ L GW   NNTDEA+KCRT+QN+ NMP QSLA QDGCQKK +L++IAPMLESTADSHVLAG+   L  VD++C+LREP+TY+H LL +E+IHA  S+ F  RS+RS  K+   CS                F  E   S+ +  ++W +   F   ++R  +I 
Sbjct:    1 MEEDLR----LHSPPFSSDPDSLPEFTRSSSRS--------SAVTVDTASKDFSHHCSPAPFLDQSTRWTDKQHSRYLSSLEASFVNELHRSMRLRGWIIQNNTDEAHKCRTMQNSLNMPRQSLAQQDGCQKKINLKRIAPMLESTADSHVLAGSQCKLRSVDRSCSLREPNTYNHCLLSNEDIHARCSSTFTKRSSRSLEKQPICCSLQPDMVSSTTEVSDQNFKDEEARSSCITIVKWFLLENFTHLMFRLVVIQ 245
[Close]
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8KTS5|A0A8B8KTS5_ABRPR (Uncharacterized protein LOC113858758 isoform X1 OS=Abrus precatorius OX=3816 GN=LOC113858758 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.525e-72
Identity = 125/218 (57.34%), Postives = 152/218 (69.72%), Query Frame = 0 
Query:    1 MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTSRE------AAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDEAYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNYLGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQ--CSFHAESGCSTT 210
            ME +LR    LHSPPF S P+S PE TRS S S        SA +VD  S++       APF DQS RWTD+ HS Y+SSLEASFVN+LH S+ L GW   NNTDEA+KCRT+QN+ NMP QSLA QDGCQKK +L++IAPMLESTADSHVLAG+   L  VD++C+LREP+TY+H LL +E+IHA  S+ F  RS+RS  K+   CS   +   STT
Sbjct:    1 MEEDLR----LHSPPFSSDPDSLPEFTRSSSRS--------SAVTVDTASKDFSHHCSPAPFLDQSTRWTDKQHSRYLSSLEASFVNELHRSMRLRGWIIQNNTDEAHKCRTMQNSLNMPRQSLAQQDGCQKKINLKRIAPMLESTADSHVLAGSQCKLRSVDRSCSLREPNTYNHCLLSNEDIHARCSSTFTKRSSRSLEKQPICCSLQPDMVSSTT 206
The following BLAST results are available for this feature:
BLAST of rna-XM_027335399.1 vs.
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_027335399.1 vs.
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_027335399.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7YFW5|A0A3Q7YFW5_CICAR2.437e-177100.00Uncharacterized protein LOC101503228 isoform X3 OS... [more]
tr|A0A1S2YIV1|A0A1S2YIV1_CICAR2.806e-154100.00Uncharacterized protein LOC101503228 isoform X1 OS... [more]
tr|A0A3Q7XCC5|A0A3Q7XCC5_CICAR2.690e-15099.05Uncharacterized protein LOC101503228 isoform X2 OS... [more]
tr|A0A2Z6LSL9|A0A2Z6LSL9_TRISU6.883e-10574.65Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|G7JL76|G7JL76_MEDTR2.570e-10474.29Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A9D4VQA3|A0A9D4VQA3_PEA7.278e-8869.67Uncharacterized protein OS=Pisum sativum OX=3888 G... [more]
tr|A0A9D4ZYN2|A0A9D4ZYN2_PEA3.592e-8569.19Uncharacterized protein OS=Pisum sativum OX=3888 G... [more]
tr|A0A2K3N3V2|A0A2K3N3V2_TRIPR2.587e-7976.47Uncharacterized protein (Fragment) OS=Trifolium pr... [more]
tr|A0A8B8KTU6|A0A8B8KTU6_ABRPR1.607e-7350.19Uncharacterized protein LOC113858758 isoform X2 OS... [more]
tr|A0A8B8KTS5|A0A8B8KTS5_ABRPR4.525e-7257.34Uncharacterized protein LOC113858758 isoform X1 OS... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044678Cold-regulated protein 27/28PANTHERPTHR33676COLD REGULATED PROTEIN 27coord: 40..208

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027335399.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027335399.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027335399.1; organism=Cicer arietinum; type=mRNA; length=714bp
ATGGAAGCGAATCTCCGTATCCGCCGTGATCTCCACTCGCCGCCGTTCCC
CTCCGGTCCAGAGTCATTTCCCGAGTTGACTCGCTCCGGCTCCGGTTCCG
GCCCCGGCCCCGACTCCGATTCCTCCGCCACATCCGTTGACAATACTTCC
AGAGAGGCCGCTCCGTTTCCGGACCAGTCTAGACGATGGACAGATCAGCT
GCACAGTCTATATATTAGTTCTTTAGAGGCCTCATTTGTGAATAAGTTGC
ATCATTCTATACATTTACATGGTTGGAGCTTTCATAATAATACCGATGAA
GCATATAAGTGTAGAACTCTGCAAAATACACCTAATATGCCTAGTCAGTC
TCTGGCTCTACAAGATGGCTGCCAGAAGAAGACCAGCCTAGAAAAAATTG
CTCCCATGTTAGAGAGCACAGCTGATTCTCATGTTCTTGCAGGAAATTAT
TTGGGACTTGCAATGGTAGATAAAGCTTGTAATTTGAGAGAGCCTAGTAC
CTATGATCATGGCTTACTCTGTGACGAGGAGATTCATGCCAGTGGAAGTA
CAGCATTTGCCAACAGGTCAGCAAGAAGTTGTTTTAAGAAGCAATGCTCA
TTCCATGCAGAATCGGGATGCAGTACAACAGTTGGGTATTTAAGGTGGCT
GATTTATTGGCTCTTCCACACAGCTTTATACAGAGCTACTATGATACATG
AGCCTTTGTTCTAG
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protein sequence of rna-XM_027335399.1_CaCDCfrontier-NCBI_v1

>rna-XM_027335399.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027335399.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027335399.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=237bp
MEANLRIRRDLHSPPFPSGPESFPELTRSGSGSGPGPDSDSSATSVDNTS
REAAPFPDQSRRWTDQLHSLYISSLEASFVNKLHHSIHLHGWSFHNNTDE
AYKCRTLQNTPNMPSQSLALQDGCQKKTSLEKIAPMLESTADSHVLAGNY
LGLAMVDKACNLREPSTYDHGLLCDEEIHASGSTAFANRSARSCFKKQCS
FHAESGCSTTVGYLRWLIYWLFHTALYRATMIHEPLF
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mRNA from alignment at chr6:18398227..18403063-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027335399.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027335399.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027335399.1; organism=Cicer arietinum; type=mRNA; length=4837bp; location=Sequence derived from: chr6:18398227..18403063- (Cicer arietinum
TAAGCGGCCTTGATAGATACGAGAAAACTGGTCATGAGTTACACGCGCCA
ATAACTGTTCACACACACTCTCTTCAACCAACGACCCTAAAAAATATCTG
GCTCACATTACCTCAAGATATTTATCTCCTTGATGACGTGGCGTCCAGAA
CAATTCACTGACACGTGTAAAAGCGACGCCATGTGGAGCTCTTTTTTTTC
TTTGCCAGGAACATACTTCTTCACCCGAAACGAACCCACAGGGTTTCTTC
TTCTTCTTCGCTCAAATTTTATCACTCTCGCGGACCATGGAAGCGAATCT
CCGTATCCGCCGTGATCTCCACTCGCCGCCGTTCCCCTCCGGTCCAGAGT
CATTTCCCGAGTTGACTCGCTCCGGCTCCGGTTCCGGCCCCGGCCCCGAC
TCCGATTCCTCCGCCACATCCGTTGACAATACTTCCAGAGAGGCCGCTCC
GTTTCCGGTAACTTTACACTCATTTTACCTTATTTTCATTTATTTACTTT
GCGTAACTGATGTTAGATTTTCCAATTTTGTCTTCCGTTCTCTTTTTCAG
CTTCGATTTTTTGTGGTGAAATAATTGCGAGTTGTGTGTGTTTGTGTGTC
TGGACGAGACCGTTGCTATAAATATCCGTTTGGAATTTGGATTCTAGGTC
TTTTAAACGCGTTTGTCTCTTGCTTTATGGTAGTATTTGTTTAATTTTCG
AAATTGTGCTTTGCATGGCGTTTAAGCTTTCGAAATTGTGCTTTCCGACA
TTTGTTTACTAACTTTAGCACTGTATGAGGTGAGAGTATCTGAAATCACT
ATATAGGGATTACCATAATGTGGTGAGGATTTTCAAGTAGCTGAAATTGA
AAATCCTGTTATAAATCTGCGAGTTGTTTGGTACTAGTTGAGGATTAACG
TTTGATTATACATCATTTTGGTAAATTGTTTCGGTTACACTGATTATGAT
TTTTATCCACTGCTTAAATGAAAATATTCTCCCTATTATGCTTTTCTCAG
TGTTGAAAGTTTGTTTTTGATTGGTGAAAGTTGATCTGATTCCCCTTTCT
GTTAAACATGGTCTAATGTGCTCTTATCTTTATGACTCAACCCATGACAG
GAATGTCTAAACAGCAAATAAGGAAAGGCAATATTGAAAAGGATATAAAT
TGTGATTCTAGAAGACGTTTTGAGCAGTTTAATTTAATGTGAAACTTATA
GATCATGAGAGATTTCATACTATTGTTAGCTTGCAGTCTTGGAGATGTCT
AATATTAGTTATTGGCGTTATAATTACATTTATTGATTGTTTAGACAGAC
TAGTTTAGTTCCTGTAATATTTCAATATCTCCAGTTGCTTGACATAATTT
TTTTTTGAGAGGCCATTTATACATTCTAAATTTTATACCAGGACCAGTCT
AGACGATGGACAGATCAGCTGCACAGTCTATATATTAGTTCTTTAGAGGC
CTCATTTGTGAATAAGTTGCATCATTCTATACATTTACATGGTTGGAGCT
TTCATAATAATACCGATGAAGCATATAAGTGTAGAACTCTGCAAAATACA
CCTAATATGCCTAGTCAGGTCAGAGATAAATTCCAATTTAGAGTCTCCAT
TGTGTTTATGTGGCTTAATTATTTTCCCTTTATAATCAGGCCTTTTTATC
CTCTTTTTTTTCCTTACAGTCTCTGGCTCTACAAGATGGCTGCCAGAAGA
AGACCAGCCTAGAAAAAATTGCTCCCATGTTAGAGAGCACAGCTGATTCT
CATGTTCTTGCAGGAAATTATTTGGGACTTGCAATGGTAGATAAAGCTTG
TAATTTGAGAGAGCCTAGTACCTATGATCATGGCTTACTCTGTGACGAGG
AGATTCATGCCAGTGGAAGTACAGCATTTGCCAACAGGTCAGCAAGAAGT
TGTTTTAAGAAGCAATGCTCATTCCATGCAGAATCGGGATGCAGTACAAC
AGGTAGCTTGAAATACACTTTCTTTTTAGCATTTTAGTTATTCTATTGAC
TAGATAATGATACTTTCTACGACCCTGTCTTTTCTTGAACCTTATTGTAT
ACAACATGCAGCTTTTTCATGTTCAATGTCAATGTACATGCATATCATCT
CACTAACACTTGTGTTATTAAATTCTGCGTTCAGTGATTTTAGTTCTCTG
AACATCGGCGTACTCAGTTTTTATGAAGTCTAATGATTTTTTTATCATTT
GTCAAAAAAATTGATCTTTTATCTTTGGCTTAAACAATGGCATAAAAGGC
ACTGCATATCAGTTAATTCGGAATTTGCCCGCAGTAAAGACTTATTGATG
CTGATCTCATTTAAACTGGTGGTTGTGGAACTGTGGTTAAAGATTACAGT
TGATATTATTAAGTTAATATTTTAGAATAATTTGTTACTGGTCATTTAAT
CATTTGATTAGTGTTATACCTTGCTACATAAACAATTTTGTTAGGTGAAC
AAAAGCACATATTTTTTGTCTATTTTCATTATATATCCTTGTATGTTTAA
ACTTACAGAAGGAGATATGTCTTGGAGATGGAAAAATCTAAAAAATTAAA
AGTAAACCTACCCCCTCCTTTTTCTTGTCTTTTGTTGGTACTTGATATGC
ATAACTTTAGATCTTCATCTAGTCGCTGAGTAAGTTTTGTGGTTATTCTG
TTATAGTGTCATAACCATGTGGTTTTTCAGATTTTTTTCTTAAAAATTAT
ATTTATAAATCTATTATAATATATTAAAACAAAGTCCCGAATTCTATCAA
CGACAACTTATCTTTTTCTATGCCACATACTCTATTATTTGTCAACTCAC
AAAAATTCTGATGTGCCACCTTCCAAAACACACTATTTCTTCTATCTTCT
ACTTCCATTCTATTTTGTTTCACCAATATGTAATGCAAATCATTTTACTT
GCCCATCCGATTGTACAATTTTCATACGTTTTAAAATTTCAACTCCAATT
TATCCCTCAATTATCCATCAATACACTTAAAAGCTTTGCTTACTTATCAA
ACCTTTCATTTCAATAACTCATACGAAAAAAAAAACACTCAATATCTTCA
AAGCATCACAATGCAAGTTTGACTACATACATGTATAAAGTTTTGGTTCA
AGTCACTTACCAATGGTAAAGACATTATGAAATGCAACCAAGTCACACCT
ATTTCAATGTATGACACATTATCAGTTCACATGTATTTCAATAATATTGT
TCGTTGTCAATTATTGTTGAAGATCATATATAACTATCATTGTATAGGAA
GTGAATTTTTTCCCTATGATGTTGAATGTGCACGTATTTTATTGCATTTT
TTCTTTGTATAATTAAAAAAATATAAATCATAATTGAAACAAAATAAAGA
TGAATAATACTAAATATTTAGAAATGAATAACTTCTAACCATTTCACTAA
CTTTTAACCATTTCACTAACTTTTAACCATTTCACTATTCACTTGAAACT
TTCTATGTCTTAAACATCCACAAGCTCTTCTTGCCTATAATCCACTCTTG
AAGTTTCTTGACCATGACAAATAGTTATTTGGAAATTTCATTTCACATTC
TAATTATTTAAATGAAACAATAGTTAAAATAATTGAAACTGTTCTCCGTC
CAAAATACTATAACTATATAATTTGGTTACATTTTGTATTGAATTTTCAT
TTGACTTGATAGTTTTGTGTAACTAACATTTTTAGTATTATTTTTTGGCT
CAACATTTTTATTATATTAAAAACATTATTATTATTACTTAAGATTTTTA
AATCTTAAGAAATTTCTATTTTATTTTGTAGTGTTCCTTCCATATATATC
ACCTATATTTGCACACGTGAAAAATTGTTATGAACATTGTTTTTAACAAA
CTAGCACTCATGAATGAATGTTATAATACACCTCGGGACACAATATCATT
TAGTACATATTGAAATTGATGGTGAGATTAACTGAATTATGATGAGCTAT
CGTGATTTTGACAAAAGCTACCCTTTAAAAGTGAAAATGTCAAAAGGAAC
ATAAATTTAAAACTAATATAAATCATATAAAATGAAGAACATATTGCAAG
GAACACTTCAATAAAAACAAAAAGCTTGAATAAATCAATTATATAAAAAA
AGTTAAAGACAAAGATTGCATCTCTAAAGTTGCAAAATCATATGAATAAT
CTCATATTAGTCAACAAGGTTTTACCTTTTCTAGCTTATATATAGTTATT
CAAATATATATTTACCTTCCGACACATAAATGTTTGAGTATATTCTACTA
TAAAATAAAAACTGCATTACTTTTAAATTATATATAATTCTATACTACGA
ATATATTAAATTTTACCGTGCAACGACATATTATTTTGTATTCACTAATA
TATTAAATTATACCGTGCAACTTGCAGGTTAGCATCTAGTTATATTTATT
TTAGATGGTGGCTGTATATCTCTTATGCTTTTGTAATGTATGCTGCAATG
GATTAAAGGTTAAAATTTTGACATGATTATTTTTGGAATATTAACATTTT
AAGGGTCACGATTCTAGGCGGTTTCCATCAATCAGCAGGGCAGTCAAGAG
AGTTTTATTTATGATAGTAGACTTTGATGCTTTGTCTTTATAGATATACG
TTTGAGTTTCTTTTTATGCTTTGGCAGTTGGGTATTTAAGGTGGCTGATT
TATTGGCTCTTCCACACAGCTTTATACAGAGCTACTATGATACATGAGCC
TTTGTTCTAGTAAATCCTTGCCAACCATGTTCCAAGATGTTGTACAAACC
ACTGGTTTCACATAATGTTCTTATATTGCTTAGCTTGATTCAGTCAAGTA
CACATTCAATAAAATGATTGACAGAAATTTGTTGGGA
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Coding sequence (CDS) from alignment at chr6:18398227..18403063-

>rna-XM_027335399.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027335399.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027335399.1; organism=Cicer arietinum; type=CDS; length=714bp; location=Sequence derived from: chr6:18398227..18403063- (Cicer arietinum
ATGGAAGCGAATCTCCGTATCCGCCGTGATCTCCACTCGCCGCCGTTCCC
CTCCGGTCCAGAGTCATTTCCCGAGTTGACTCGCTCCGGCTCCGGTTCCG
GCCCCGGCCCCGACTCCGATTCCTCCGCCACATCCGTTGACAATACTTCC
AGAGAGGCCGCTCCGTTTCCGGACCAGTCTAGACGATGGACAGATCAGCT
GCACAGTCTATATATTAGTTCTTTAGAGGCCTCATTTGTGAATAAGTTGC
ATCATTCTATACATTTACATGGTTGGAGCTTTCATAATAATACCGATGAA
GCATATAAGTGTAGAACTCTGCAAAATACACCTAATATGCCTAGTCAGTC
TCTGGCTCTACAAGATGGCTGCCAGAAGAAGACCAGCCTAGAAAAAATTG
CTCCCATGTTAGAGAGCACAGCTGATTCTCATGTTCTTGCAGGAAATTAT
TTGGGACTTGCAATGGTAGATAAAGCTTGTAATTTGAGAGAGCCTAGTAC
CTATGATCATGGCTTACTCTGTGACGAGGAGATTCATGCCAGTGGAAGTA
CAGCATTTGCCAACAGGTCAGCAAGAAGTTGTTTTAAGAAGCAATGCTCA
TTCCATGCAGAATCGGGATGCAGTACAACAGTTGGGTATTTAAGGTGGCT
GATTTATTGGCTCTTCCACACAGCTTTATACAGAGCTACTATGATACATG
AGCCTTTGTTCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR044678COR27/28
Vocabulary: Biological Process
TermDefinition
GO:0009409response to cold
GO:0042752regulation of circadian rhythm