rna-XM_027336558.1

Transcript Overview
Namerna-XM_027336558.1
Unique Namerna-XM_027336558.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length645
Productuncharacterized LOC101491481, transcript variant X2
References
External references for this mRNA
DatabaseAccession
GeneID101491481
GenBankXM_027336558.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr7chromosomechr7:814133..815709 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascanL083Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cacanL037Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascanL211Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0235Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0412Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0556Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cacanL317Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancanL0801Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL045Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanL0125Cicer arietinum ICC 4958 genome v2Cicer arietinum
caicanL0854Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0929Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0988Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR732Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cancrR841Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
canvrvR565Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cantifR517Vicia faba cv. Tiffany genome v1.0Vicia faba
canvrvR611Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canvfhR533Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cantifR553Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR564Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpvR698Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canpvR713Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR604Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR660Vicia sativa cv. Studenica genome v1.0Vicia sativa
canzwsR461Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR490Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR533Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuaR552Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR561Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuR590Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canpsR617Pisum sativum Cameor genome v1aPisum sativum
canpsR622Pisum sativum Cameor genome v1aPisum sativum
avjcanL141Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL259Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR457Cicer arietinum
cancarR493Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101491481gene-LOC101491481_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027336558.1-1exon-XM_027336558.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_027336558.1-2exon-XM_027336558.1-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027192359.1cds-XP_027192359.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027336558.1_CaCDCfrontier-NCBI_v1rna-XM_027336558.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027336558.1_CaCDCfrontier-NCBI_v1rna-XM_027336558.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
BLAST of rna-XM_027336558.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11742102-11743265 REVERSE LENGTH=387)

HSP 1 Score: 125.176 bits (313), Expect = 6.036e-34
Identity = 88/191 (46.07%), Postives = 107/191 (56.02%), Query Frame = 0
Query:    8 NILPADQLFLHGLILPLHLLSTQNKPHHHSSPSI----PD--------------------STSITTTTTPSHRWKDIFIKKK-------KTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGG 159
            ++L AD+LF  G++LPL LLS   K    S P+I    PD                     + +T  TT S RW+DIF K +       +      K KKK       G  +  ELNINIWPFSRS SAGN+V RP+       TR+V+SAPCSRSNS G+SKSRKWPSSP   GVHL R+SP+WQ RRGG
Sbjct:   99 DLLSADELFHDGVLLPLDLLSV--KSELQSDPNIAECDPDPSPSTGSLITEQKSDLEPGLGSELTRETTVSKRWRDIFRKSETKPPGKKEKVKENKKEKKKTGSGPSSGSGSGAELNINIWPFSRSRSAGNNVTRPRMSFGAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQVRRGG 287          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XFW6|A0A3Q7XFW6_CICAR (Uncharacterized protein LOC101491481 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101491481 PE=4 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 2.068e-152
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 214
            MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH
Sbjct:    1 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 214          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3EBZ6|A0A1S3EBZ6_CICAR (Uncharacterized protein LOC101491481 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101491481 PE=4 SV=2)

HSP 1 Score: 430.254 bits (1105), Expect = 5.002e-152
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 214
            MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH
Sbjct:   13 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 226          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KBX3|A0A2K3KBX3_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g053692 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.690e-66
Identity = 143/263 (54.37%), Postives = 167/263 (63.50%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPHHH-----SSPSIPDSTSITTTTTPS--HRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTS-----PELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYL--------------KQRRSRVGSTGCGGG----------IPMC------RSEVKSTVSG----KLRTFFTKKTVLTSH 214
            +PNILPADQLF  G+ILPLHL+ST+NKP  H     SSP+I   ++ TTTTT S   RWKDIF  +KK NN E+K+KKKDKR+   G          ELNIN+WPFSRS SAGNS  +PKS     V+R+VNSAPCSRSNSAGDSKSRKWPSSP   GVHL RSSP+WQ RRGG    K  ++ +                RRSR+ STG GGG          +PMC       SE +++V G     LRTFFTKKTVLTSH
Sbjct:    9 QPNILPADQLFHDGVILPLHLISTKNKPDRHQKPDSSSPAITSDSTTTTTTTSSSSKRWKDIF--RKKHNNTEEKVKKKDKRVGNGGGVGVSVSSSAELNINLWPFSRSRSAGNSTTKPKSFTGAPVSRKVNSAPCSRSNSAGDSKSRKWPSSPGRAGVHLGRSSPVWQVRRGGCSATKNTSLSVSIKPADKSKRETTTSTRRSRLASTGAGGGSAKDKVLNLNVPMCIIGYNDSSEKENSVGGGKLFNLRTFFTKKTVLTSH 269          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LHT1|A0A2Z6LHT1_TRISU (DUF4005 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_203150 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.534e-60
Identity = 136/248 (54.84%), Postives = 152/248 (61.29%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSIT---------TTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTS---PELNINIWPFSRSSSAGNSVIRPKSVT-----RRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQ-GRRGGSGVKKTEAMYLKQRRSRVGSTGCGG-------GIPM---------CRSEVKSTVSG--KLRTFFTKKTVLTSH 214
            +PNILPADQLF  G+ILPLHL+ST+ KP  H  P   DS+S           TT++ S RWKDIF KK   N AE+K+KKKDKR+   G        ELNIN+WPF RSSSAGNS  +PKS T     R+VNSAPCSRSNSAGDSKSRKWPSSP   GVHL RSSP+WQ  RRGG             RRSR+ STG GG        +PM         CR E  S  S    LRTFFTKKTVL SH
Sbjct:   44 QPNILPADQLFHDGVILPLHLISTKYKPEPHQKP---DSSSAAITSDSTTTTTTSSNSKRWKDIFRKKNNNNAAEEKVKKKDKRVGNNGGGGGVSSAELNINLWPFFRSSSAGNSTTKPKSFTGAPFTRKVNSAPCSRSNSAGDSKSRKWPSSPGRAGVHLGRSSPVWQVPRRGGCSATSW------NRRSRLASTGGGGKGKVLNLNVPMSIEYSNDSGCRIEENSGGSKLFNLRTFFTKKTVLMSH 282          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|G7JKF1|G7JKF1_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_4g132690 PE=4 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.047e-48
Identity = 129/253 (50.99%), Postives = 147/253 (58.10%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNK----PHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGV---KKTEAMYLKQRRSRVGSTG-----------CGGGIPMCR----------SEVKSTVSG----------KLRTFFTKKTVLT 212
            +PNI+PADQLFL+G+ILPLHLLSTQNK    P  +SSP I D  +ITTTTT S RWK+IF+KK      + K K+K           S ELNINIWPFSRS S+GNSV RPKS     VTR+VNSAPCSRSNSAGDSKSRK PSSP   GVHL RSSP+WQ R          K++      RRSR  ST                +PMC            E  ++VS            LRTFFTKKT LT
Sbjct:   42 QPNIIPADQLFLNGVILPLHLLSTQNKHDPVPEPNSSPPITDGLTITTTTT-SKRWKNIFMKKNNNTEEKVKKKEKRVGNSGGAGGGSAELNINIWPFSRSRSSGNSVSRPKSSTGAPVTRKVNSAPCSRSNSAGDSKSRKLPSSPARVGVHLGRSSPVWQVRHAAKNTVNPDKSKRETTTSRRSRFTSTTGGGGGSGKAKVLNLSVPMCVGYSHNISYRIEENSNSVSNGGGGGGGKLFNLRTFFTKKTFLT 293          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445K1X9|A0A445K1X9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_019065 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.842e-47
Identity = 120/254 (47.24%), Postives = 147/254 (57.87%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSH-RWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKS---VTRRVNSAPCSRSNSAGDSKSRKWPSS---PGVHLARSSPIWQGRRGGSGVKK------TEAMYLKQRRSRVGSTGCGG------GIPM---------CRSEVKST--------------VSGK---LRTFFTKKTVLTSH 214
            +PNIL ADQL ++G++LPLHLL   NKP    SP+I DS+S +++   +  RWKDIF K  K N    KLK+K     + GV+TS ELNINIWPFSRS SAGN+  RPK     TR+ NSAPCSRSNSAG+SKSRKWPSS   PGVHL RSSP+WQ RR  + V +       ++     R   VG +G          +PM         CRS+  S               V GK   LR+ FTKK V+TSH
Sbjct:   31 QPNILSADQLIVNGVLLPLHLL---NKPD--PSPAITDSSSSSSSAATASKRWKDIFKKSDKKNTDAKKLKEK-----KSGVTTSAELNINIWPFSRSKSAGNAATRPKPFVPATRKANSAPCSRSNSAGESKSRKWPSSPARPGVHLGRSSPVWQVRRPKNPVPEPLNPDINKSKRESHRSKVVGGSGSSKTKVLNLNVPMCIGYRHHFTCRSDENSAIRVSNPNPPHAHANVGGKLFTLRSLFTKKNVVTSH 274          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|I1KNH3|I1KNH3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102663000 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.842e-47
Identity = 120/254 (47.24%), Postives = 147/254 (57.87%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSH-RWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKS---VTRRVNSAPCSRSNSAGDSKSRKWPSS---PGVHLARSSPIWQGRRGGSGVKK------TEAMYLKQRRSRVGSTGCGG------GIPM---------CRSEVKST--------------VSGK---LRTFFTKKTVLTSH 214
            +PNIL ADQL ++G++LPLHLL   NKP    SP+I DS+S +++   +  RWKDIF K  K N    KLK+K     + GV+TS ELNINIWPFSRS SAGN+  RPK     TR+ NSAPCSRSNSAG+SKSRKWPSS   PGVHL RSSP+WQ RR  + V +       ++     R   VG +G          +PM         CRS+  S               V GK   LR+ FTKK V+TSH
Sbjct:   31 QPNILSADQLIVNGVLLPLHLL---NKPD--PSPAITDSSSSSSSAATASKRWKDIFKKSDKKNTDAKKLKEK-----KSGVTTSAELNINIWPFSRSKSAGNAATRPKPFVPATRKANSAPCSRSNSAGESKSRKWPSSPARPGVHLGRSSPVWQVRRPKNPVPEPLNPDINKSKRESHRSKVVGGSGSSKTKVLNLNVPMCIGYRHHFTCRSDENSAIRVSNPNPPHAHANVGGKLFTLRSLFTKKNVVTSH 274          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4C2E1|A0A6P4C2E1_ARADU (Uncharacterized protein LOC107466410 OS=Arachis duranensis OX=130453 GN=LOC107466410 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.643e-46
Identity = 121/303 (39.93%), Postives = 157/303 (51.82%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPHH-------------------HSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDK--LKKKDKRLFRK-------GVSTS--PELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYLKQ------------RRSRVGSTGCGGG--------IPM---------CRSEVKSTVSG---------------------------KLRTFFTKKTVLTSH 214
            +P+IL AD+LF+ G++LPLHL+S++ + H+                     S SI DS+    T + S RW+DIF K  +  N+E+    ++ D    +        G ST+   ELNINIWPFSRS SAGN+V RPK      VTR+ NSAPCSRSNSAG+SKSRKWP+SP   GVHL RSSP+WQ RRGGS  K TE ++L              RRS+V S+G  GG        +P          CRS+V ++  G                            LR+ F KKT+LTSH
Sbjct:   37 QPDILSADELFVDGVLLPLHLVSSKTQIHNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSSSKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTASAAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPNSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLTSH 338          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445EL94|A0A445EL94_ARAHY (Membrane-associated kinase regulator OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000751 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.643e-46
Identity = 121/303 (39.93%), Postives = 157/303 (51.82%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPHH-------------------HSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDK--LKKKDKRLFRK-------GVSTS--PELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYLKQ------------RRSRVGSTGCGGG--------IPM---------CRSEVKSTVSG---------------------------KLRTFFTKKTVLTSH 214
            +P+IL AD+LF+ G++LPLHL+S++ + H+                     S SI DS+    T + S RW+DIF K  +  N+E+    ++ D    +        G ST+   ELNINIWPFSRS SAGN+V RPK      VTR+ NSAPCSRSNSAG+SKSRKWP+SP   GVHL RSSP+WQ RRGGS  K TE ++L              RRS+V S+G  GG        +P          CRS+V ++  G                            LR+ F KKT+LTSH
Sbjct:   37 QPDILSADELFVDGVLLPLHLVSSKTQIHNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSSSKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTASAAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPNSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLTSH 338          
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KNU4|A0A4D6KNU4_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g82 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.884e-46
Identity = 127/284 (44.72%), Postives = 149/284 (52.46%), Query Frame = 0
Query:    6 KPNILPADQLFLHGLILPLHLLSTQNKPH-----------------HHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPK---SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYL------KQRRSRVGSTGCGG--------GIPM---------CRSEVKST--------------------------VSGK---LRTFFTKKTVLTSH 214
            +PNIL ADQLF++G++LPLHLL   NKPH                    SP+I DSTS     TPS RWKDIF KKK   ++ D  KK+ K     GV++S ELNINIWPFSRS SAGN+  RPK      R+ NSAPCSRSNSAG+SKSRKWPSSP   GVHL RSSP+WQ RRG    K  E   L      K RRS++   G            +PM         CRS+  S                           V GK   LR+ FTKK+V+ SH
Sbjct:   29 QPNILSADQLFVNGVLLPLHLL---NKPHPSQTPPDPEPEPEPEPEPEPSPAITDSTS---AATPSKRWKDIF-KKKNAESSNDARKKEKK----NGVASSAELNINIWPFSRSRSAGNAGTRPKLFAPAARKANSAPCSRSNSAGESKSRKWPSSPGRAGVHLGRSSPVWQVRRG----KNPEPPPLHHENKPKSRRSKLSGGGWNNPKTKVLNLNVPMCISYRHHLTCRSDENSAIGVRGASDNIPGSDSNSGNSNPAHANVGGKLFNLRSLFTKKSVVASH 297          
The following BLAST results are available for this feature:
BLAST of rna-XM_027336558.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|6.036e-3446.07Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_027336558.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7XFW6|A0A3Q7XFW6_CICAR2.068e-152100.00Uncharacterized protein LOC101491481 isoform X2 OS... [more]
tr|A0A1S3EBZ6|A0A1S3EBZ6_CICAR5.002e-152100.00Uncharacterized protein LOC101491481 isoform X1 OS... [more]
tr|A0A2K3KBX3|A0A2K3KBX3_TRIPR3.690e-6654.37Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A2Z6LHT1|A0A2Z6LHT1_TRISU1.534e-6054.84DUF4005 domain-containing protein OS=Trifolium sub... [more]
tr|G7JKF1|G7JKF1_MEDTR1.047e-4850.99Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A445K1X9|A0A445K1X9_GLYSO1.842e-4747.24Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|I1KNH3|I1KNH3_SOYBN1.842e-4747.24Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A6P4C2E1|A0A6P4C2E1_ARADU1.643e-4639.93Uncharacterized protein LOC107466410 OS=Arachis du... [more]
tr|A0A445EL94|A0A445EL94_ARAHY1.643e-4639.93Membrane-associated kinase regulator OS=Arachis hy... [more]
tr|A0A4D6KNU4|A0A4D6KNU4_VIGUN1.884e-4644.72Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35132SERINE/ARGININE REPETITIVE MATRIX-LIKE PROTEINcoord: 5..171

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1; organism=Cicer arietinum; type=mRNA; length=645bp
ATGCTTCATTCTTCGAAACCCAACATCCTCCCCGCCGATCAACTCTTTCT
CCACGGCCTCATTCTTCCTCTCCATCTTCTCTCTACTCAAAACAAACCCC
ACCATCATTCATCCCCTTCCATACCCGACTCCACCTCCATCACCACCACC
ACAACACCTTCCCACCGCTGGAAAGATATCTTCATCAAAAAGAAGAAAAC
CAACAACGCAGAAGATAAACTGAAGAAAAAAGATAAAAGACTTTTTCGAA
AGGGTGTATCTACTTCACCTGAACTTAACATTAATATATGGCCTTTCTCT
CGGAGTAGTTCCGCCGGTAACTCTGTAATCCGACCTAAATCGGTTACCCG
GAGAGTTAACAGCGCGCCGTGTTCGAGGAGCAACTCCGCCGGCGATTCAA
AGTCAAGGAAGTGGCCGAGTAGTCCGGGGGTTCATCTTGCAAGGAGCAGT
CCGATTTGGCAGGGTCGGCGTGGAGGGTCAGGCGTGAAGAAGACAGAAGC
AATGTATCTGAAGCAGCGGCGGAGTAGGGTGGGTTCAACCGGGTGCGGTG
GTGGAATTCCAATGTGTAGAAGTGAGGTGAAGAGTACTGTCAGTGGTAAG
CTGCGCACATTCTTTACCAAGAAAACCGTTCTAACATCTCACTAG
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protein sequence of rna-XM_027336558.1_CaCDCfrontier-NCBI_v1

>rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=214bp
MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTT
TTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFS
RSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSS
PIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGK
LRTFFTKKTVLTSH
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mRNA from alignment at chr7:814133..815709+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1; organism=Cicer arietinum; type=mRNA; length=1577bp; location=Sequence derived from: chr7:814133..815709+ (Cicer arietinum
GTAAGATTTTTTTTGTACCGAAACAGTAGTATTTGTTAATAGTTGAGACT AAAAGATATGTCATCTCTTTAGTGTAGCTTGGACCTTCATATTGCGccat tattttgttgttgattgTGAAAGATGGATGGATCGGTGAACTTATTATAG GACAAAATTTCATCTCCTCAAAGGTAAGGTGGTTCTTGTAAACCTTTTAA CTCAAGTCAATGTTTAATCAGTGGGAATAAAGGTTTagataaaaattgaa taataatacTTATAGTGTGGAAATTAACCTCACGGAGCgcgtaacttttt ttttgttccttAGAGCTAGGGTCAACAAGAAATGCAAGGGTTTCAAAATA TGTTGGTGTGTGACTTTGGGCTTTCGGGTGTTGTTTCCAACAATTaagga taaatatttgtttgaaatttctAACACCAATGAACTCCATTAATAAAACT TCTTTCACTTTGGTCCGCAGAAACAAGATGCAAAAACACAATTGTAATTA AAAGACAacattgctgatttttttttttttatgttttaataatatctcat ttttattttagatatttatattttttcatatttttttttgtatttttact tattttcttaaAGTTTGAAATATAGTATAGTATAAAAAAGTGTATATTTG AGTAGAGTAGTTagtatatatattagtagttGATGCCTCCTTTGTTAATT AAATGCTTTGTACGGTCATTtggtctctctctctctcgcaTTAACATTTT CCAGATGGACACCAAACGTTCACCAGAATTCGAATTCTGTATGCTTCATT CTTCGAAACCCAACATCCTCCCCGCCGATCAACTCTTTCTCCACGGCCTC ATTCTTCCTCTCCATCTTCTCTCTACTCAAAACAAACCCCACCATCATTC ATCCCCTTCCATACCCGACTCCACCTCCATCACCACCACCACAACACCTT CCCACCGCTGGAAAGATATCTTcatcaaaaagaagaaaaccaACAACGCA GAAGATAAACtgaagaaaaaagataaaagactttTTCGAAAGGGTGTATC TACTTCACCTGAACTTAACATTAATATATGGCCTTTCTCTCGGAGTAGTT CCGCCGGTAACTCTGTAATCCGACCTAAATCGGTTACCCGGAGAGTTAAC AGCGCGCCGTGTTCGAGGAGCAACTCCGCCGGCGATTCAAAGTCAAGGAA GTGGCCGAGTAGTCCGGGGGTTCATCTTGCAAGGAGCAGTCCGATTTGGC AGGGTCGGCGTGGAGGGTCAGGCGTGAAGAAGACAGAAGCAATGTATCTG AAGCAGCGGCGGAGTAGGGTGGGTTCAACCGGGTGCGGTGGTGGAATTCC AATGTGTAGAAGTGAGGTGAAGAGTACTGTCAGTGGTAAGCTGCGCACAT TCTTTACCAAGAAAACCGTTCTAACATCTCACTagtttctttctcttttt tatgccacccttttctttttattactATTCTGTAAATTAaattctagttt tttttttttttgtgaaatagATGTGGTATTTATTACTGTTTTTGTTTGTA TTGCATAAGAAAAATGTTTGGGGAATA
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Coding sequence (CDS) from alignment at chr7:814133..815709+

>rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1; organism=Cicer arietinum; type=CDS; length=645bp; location=Sequence derived from: chr7:814133..815709+ (Cicer arietinum
ATGCTTCATTCTTCGAAACCCAACATCCTCCCCGCCGATCAACTCTTTCT
CCACGGCCTCATTCTTCCTCTCCATCTTCTCTCTACTCAAAACAAACCCC
ACCATCATTCATCCCCTTCCATACCCGACTCCACCTCCATCACCACCACC
ACAACACCTTCCCACCGCTGGAAAGATATCTTcatcaaaaagaagaaaac
caACAACGCAGAAGATAAACtgaagaaaaaagataaaagactttTTCGAA
AGGGTGTATCTACTTCACCTGAACTTAACATTAATATATGGCCTTTCTCT
CGGAGTAGTTCCGCCGGTAACTCTGTAATCCGACCTAAATCGGTTACCCG
GAGAGTTAACAGCGCGCCGTGTTCGAGGAGCAACTCCGCCGGCGATTCAA
AGTCAAGGAAGTGGCCGAGTAGTCCGGGGGTTCATCTTGCAAGGAGCAGT
CCGATTTGGCAGGGTCGGCGTGGAGGGTCAGGCGTGAAGAAGACAGAAGC
AATGTATCTGAAGCAGCGGCGGAGTAGGGTGGGTTCAACCGGGTGCGGTG
GTGGAATTCCAATGTGTAGAAGTGAGGTGAAGAGTACTGTCAGTGGTAAG
CTGCGCACATTCTTTACCAAGAAAACCGTTCTAACATCTCACTag
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