rna-XM_027336558.1
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_027336558.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:11742102-11743265 REVERSE LENGTH=387) HSP 1 Score: 125.176 bits (313), Expect = 6.036e-34 Identity = 88/191 (46.07%), Postives = 107/191 (56.02%), Query Frame = 0 Query: 8 NILPADQLFLHGLILPLHLLSTQNKPHHHSSPSI----PD--------------------STSITTTTTPSHRWKDIFIKKK-------KTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGG 159 ++L AD+LF G++LPL LLS K S P+I PD + +T TT S RW+DIF K + + K KKK G + ELNINIWPFSRS SAGN+V RP+ TR+V+SAPCSRSNS G+SKSRKWPSSP GVHL R+SP+WQ RRGG Sbjct: 99 DLLSADELFHDGVLLPLDLLSV--KSELQSDPNIAECDPDPSPSTGSLITEQKSDLEPGLGSELTRETTVSKRWRDIFRKSETKPPGKKEKVKENKKEKKKTGSGPSSGSGSGAELNINIWPFSRSRSAGNNVTRPRMSFGAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQVRRGG 287
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XFW6|A0A3Q7XFW6_CICAR (Uncharacterized protein LOC101491481 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101491481 PE=4 SV=1) HSP 1 Score: 431.024 bits (1107), Expect = 2.068e-152 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0 Query: 1 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 214 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH Sbjct: 1 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 214
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3EBZ6|A0A1S3EBZ6_CICAR (Uncharacterized protein LOC101491481 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101491481 PE=4 SV=2) HSP 1 Score: 430.254 bits (1105), Expect = 5.002e-152 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0 Query: 1 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 214 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH Sbjct: 13 MLHSSKPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKSVTRRVNSAPCSRSNSAGDSKSRKWPSSPGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTVSGKLRTFFTKKTVLTSH 226
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KBX3|A0A2K3KBX3_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g053692 PE=4 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.690e-66 Identity = 143/263 (54.37%), Postives = 167/263 (63.50%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPHHH-----SSPSIPDSTSITTTTTPS--HRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTS-----PELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYL--------------KQRRSRVGSTGCGGG----------IPMC------RSEVKSTVSG----KLRTFFTKKTVLTSH 214 +PNILPADQLF G+ILPLHL+ST+NKP H SSP+I ++ TTTTT S RWKDIF +KK NN E+K+KKKDKR+ G ELNIN+WPFSRS SAGNS +PKS V+R+VNSAPCSRSNSAGDSKSRKWPSSP GVHL RSSP+WQ RRGG K ++ + RRSR+ STG GGG +PMC SE +++V G LRTFFTKKTVLTSH Sbjct: 9 QPNILPADQLFHDGVILPLHLISTKNKPDRHQKPDSSSPAITSDSTTTTTTTSSSSKRWKDIF--RKKHNNTEEKVKKKDKRVGNGGGVGVSVSSSAELNINLWPFSRSRSAGNSTTKPKSFTGAPVSRKVNSAPCSRSNSAGDSKSRKWPSSPGRAGVHLGRSSPVWQVRRGGCSATKNTSLSVSIKPADKSKRETTTSTRRSRLASTGAGGGSAKDKVLNLNVPMCIIGYNDSSEKENSVGGGKLFNLRTFFTKKTVLTSH 269
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LHT1|A0A2Z6LHT1_TRISU (DUF4005 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_203150 PE=4 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 1.534e-60 Identity = 136/248 (54.84%), Postives = 152/248 (61.29%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSIT---------TTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTS---PELNINIWPFSRSSSAGNSVIRPKSVT-----RRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQ-GRRGGSGVKKTEAMYLKQRRSRVGSTGCGG-------GIPM---------CRSEVKSTVSG--KLRTFFTKKTVLTSH 214 +PNILPADQLF G+ILPLHL+ST+ KP H P DS+S TT++ S RWKDIF KK N AE+K+KKKDKR+ G ELNIN+WPF RSSSAGNS +PKS T R+VNSAPCSRSNSAGDSKSRKWPSSP GVHL RSSP+WQ RRGG RRSR+ STG GG +PM CR E S S LRTFFTKKTVL SH Sbjct: 44 QPNILPADQLFHDGVILPLHLISTKYKPEPHQKP---DSSSAAITSDSTTTTTTSSNSKRWKDIFRKKNNNNAAEEKVKKKDKRVGNNGGGGGVSSAELNINLWPFFRSSSAGNSTTKPKSFTGAPFTRKVNSAPCSRSNSAGDSKSRKWPSSPGRAGVHLGRSSPVWQVPRRGGCSATSW------NRRSRLASTGGGGKGKVLNLNVPMSIEYSNDSGCRIEENSGGSKLFNLRTFFTKKTVLMSH 282
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|G7JKF1|G7JKF1_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_4g132690 PE=4 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 1.047e-48 Identity = 129/253 (50.99%), Postives = 147/253 (58.10%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNK----PHHHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGV---KKTEAMYLKQRRSRVGSTG-----------CGGGIPMCR----------SEVKSTVSG----------KLRTFFTKKTVLT 212 +PNI+PADQLFL+G+ILPLHLLSTQNK P +SSP I D +ITTTTT S RWK+IF+KK + K K+K S ELNINIWPFSRS S+GNSV RPKS VTR+VNSAPCSRSNSAGDSKSRK PSSP GVHL RSSP+WQ R K++ RRSR ST +PMC E ++VS LRTFFTKKT LT Sbjct: 42 QPNIIPADQLFLNGVILPLHLLSTQNKHDPVPEPNSSPPITDGLTITTTTT-SKRWKNIFMKKNNNTEEKVKKKEKRVGNSGGAGGGSAELNINIWPFSRSRSSGNSVSRPKSSTGAPVTRKVNSAPCSRSNSAGDSKSRKLPSSPARVGVHLGRSSPVWQVRHAAKNTVNPDKSKRETTTSRRSRFTSTTGGGGGSGKAKVLNLSVPMCVGYSHNISYRIEENSNSVSNGGGGGGGKLFNLRTFFTKKTFLT 293
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445K1X9|A0A445K1X9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_019065 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.842e-47 Identity = 120/254 (47.24%), Postives = 147/254 (57.87%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSH-RWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKS---VTRRVNSAPCSRSNSAGDSKSRKWPSS---PGVHLARSSPIWQGRRGGSGVKK------TEAMYLKQRRSRVGSTGCGG------GIPM---------CRSEVKST--------------VSGK---LRTFFTKKTVLTSH 214 +PNIL ADQL ++G++LPLHLL NKP SP+I DS+S +++ + RWKDIF K K N KLK+K + GV+TS ELNINIWPFSRS SAGN+ RPK TR+ NSAPCSRSNSAG+SKSRKWPSS PGVHL RSSP+WQ RR + V + ++ R VG +G +PM CRS+ S V GK LR+ FTKK V+TSH Sbjct: 31 QPNILSADQLIVNGVLLPLHLL---NKPD--PSPAITDSSSSSSSAATASKRWKDIFKKSDKKNTDAKKLKEK-----KSGVTTSAELNINIWPFSRSKSAGNAATRPKPFVPATRKANSAPCSRSNSAGESKSRKWPSSPARPGVHLGRSSPVWQVRRPKNPVPEPLNPDINKSKRESHRSKVVGGSGSSKTKVLNLNVPMCIGYRHHFTCRSDENSAIRVSNPNPPHAHANVGGKLFTLRSLFTKKNVVTSH 274
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|I1KNH3|I1KNH3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102663000 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.842e-47 Identity = 120/254 (47.24%), Postives = 147/254 (57.87%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPHHHSSPSIPDSTSITTTTTPSH-RWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPKS---VTRRVNSAPCSRSNSAGDSKSRKWPSS---PGVHLARSSPIWQGRRGGSGVKK------TEAMYLKQRRSRVGSTGCGG------GIPM---------CRSEVKST--------------VSGK---LRTFFTKKTVLTSH 214 +PNIL ADQL ++G++LPLHLL NKP SP+I DS+S +++ + RWKDIF K K N KLK+K + GV+TS ELNINIWPFSRS SAGN+ RPK TR+ NSAPCSRSNSAG+SKSRKWPSS PGVHL RSSP+WQ RR + V + ++ R VG +G +PM CRS+ S V GK LR+ FTKK V+TSH Sbjct: 31 QPNILSADQLIVNGVLLPLHLL---NKPD--PSPAITDSSSSSSSAATASKRWKDIFKKSDKKNTDAKKLKEK-----KSGVTTSAELNINIWPFSRSKSAGNAATRPKPFVPATRKANSAPCSRSNSAGESKSRKWPSSPARPGVHLGRSSPVWQVRRPKNPVPEPLNPDINKSKRESHRSKVVGGSGSSKTKVLNLNVPMCIGYRHHFTCRSDENSAIRVSNPNPPHAHANVGGKLFTLRSLFTKKNVVTSH 274
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4C2E1|A0A6P4C2E1_ARADU (Uncharacterized protein LOC107466410 OS=Arachis duranensis OX=130453 GN=LOC107466410 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.643e-46 Identity = 121/303 (39.93%), Postives = 157/303 (51.82%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPHH-------------------HSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDK--LKKKDKRLFRK-------GVSTS--PELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYLKQ------------RRSRVGSTGCGGG--------IPM---------CRSEVKSTVSG---------------------------KLRTFFTKKTVLTSH 214 +P+IL AD+LF+ G++LPLHL+S++ + H+ S SI DS+ T + S RW+DIF K + N+E+ ++ D + G ST+ ELNINIWPFSRS SAGN+V RPK VTR+ NSAPCSRSNSAG+SKSRKWP+SP GVHL RSSP+WQ RRGGS K TE ++L RRS+V S+G GG +P CRS+V ++ G LR+ F KKT+LTSH Sbjct: 37 QPDILSADELFVDGVLLPLHLVSSKTQIHNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSSSKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTASAAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPNSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLTSH 338
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445EL94|A0A445EL94_ARAHY (Membrane-associated kinase regulator OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000751 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.643e-46 Identity = 121/303 (39.93%), Postives = 157/303 (51.82%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPHH-------------------HSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDK--LKKKDKRLFRK-------GVSTS--PELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYLKQ------------RRSRVGSTGCGGG--------IPM---------CRSEVKSTVSG---------------------------KLRTFFTKKTVLTSH 214 +P+IL AD+LF+ G++LPLHL+S++ + H+ S SI DS+ T + S RW+DIF K + N+E+ ++ D + G ST+ ELNINIWPFSRS SAGN+V RPK VTR+ NSAPCSRSNSAG+SKSRKWP+SP GVHL RSSP+WQ RRGGS K TE ++L RRS+V S+G GG +P CRS+V ++ G LR+ F KKT+LTSH Sbjct: 37 QPDILSADELFVDGVLLPLHLVSSKTQIHNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSSSKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTASAAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPNSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLTSH 338
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KNU4|A0A4D6KNU4_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g82 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.884e-46 Identity = 127/284 (44.72%), Postives = 149/284 (52.46%), Query Frame = 0 Query: 6 KPNILPADQLFLHGLILPLHLLSTQNKPH-----------------HHSSPSIPDSTSITTTTTPSHRWKDIFIKKKKTNNAEDKLKKKDKRLFRKGVSTSPELNINIWPFSRSSSAGNSVIRPK---SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYL------KQRRSRVGSTGCGG--------GIPM---------CRSEVKST--------------------------VSGK---LRTFFTKKTVLTSH 214 +PNIL ADQLF++G++LPLHLL NKPH SP+I DSTS TPS RWKDIF KKK ++ D KK+ K GV++S ELNINIWPFSRS SAGN+ RPK R+ NSAPCSRSNSAG+SKSRKWPSSP GVHL RSSP+WQ RRG K E L K RRS++ G +PM CRS+ S V GK LR+ FTKK+V+ SH Sbjct: 29 QPNILSADQLFVNGVLLPLHLL---NKPHPSQTPPDPEPEPEPEPEPEPSPAITDSTS---AATPSKRWKDIF-KKKNAESSNDARKKEKK----NGVASSAELNINIWPFSRSRSAGNAGTRPKLFAPAARKANSAPCSRSNSAGESKSRKWPSSPGRAGVHLGRSSPVWQVRRG----KNPEPPPLHHENKPKSRRSKLSGGGWNNPKTKVLNLNVPMCISYRHHLTCRSDENSAIGVRGASDNIPGSDSNSGNSNPAHANVGGKLFNLRSLFTKKSVVASH 297 The following BLAST results are available for this feature:
BLAST of rna-XM_027336558.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_027336558.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_027336558.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1; organism=Cicer arietinum; type=mRNA; length=645bpback to top protein sequence of rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 >rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=214bpback to top mRNA from alignment at chr7:814133..815709+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1; organism=Cicer arietinum; type=mRNA; length=1577bp; location=Sequence derived from: chr7:814133..815709+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr7:814133..815709+ >rna-XM_027336558.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027336558.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027336558.1; organism=Cicer arietinum; type=CDS; length=645bp; location=Sequence derived from: chr7:814133..815709+ (Cicer arietinumback to top |