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Genome Overview
Analysis Name | Cicer arietinum CDC Frontier genome v1.0 |
Method | whole genome shotgun sequencing, Illumina (Assembly with SOAPdenovo) |
Source | CDC Frontier, kabuli type |
Date performed | 2013-01-01 |
About the assembly
A kabuli chickpea genome containing an estimated 28,269 genes. Assembly statistics (Varshney et al. 2013):
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All scaffold ( ≥ 1K) |
Scaffold ≥ 2K |
Assembly features |
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Number of scaffolds |
7,163 |
3,659 |
Total span |
532.29 Mb |
527.50 Mb |
N50 (scaffolds) |
39.99 Mb |
39.99 Mb |
Longest scaffold |
59.46 Mb |
59.46 Mb |
Number of contigs |
62,619 |
56,440 |
Longest contig |
258.19 kb |
258.19 kb |
N50 (contigs) |
23.54 kb |
23.69 kb |
GC content |
30.78% |
30.76% |
Gene models |
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Number of gene models |
28,269 |
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Number of gene models (without transposable elements) |
28,255 |
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Mean transcript length |
3,055.39 |
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Mean coding sequence length |
1,166.44 bp |
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Mean number of exons per gene |
4.93 |
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Mean exon length |
236.51 bp |
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Mean intron length |
480.43 bp |
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Number of genes annotated |
25,365 (89.73%) |
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Number of genes unannotated |
2,904 (10.27%) |
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Non-protein coding genes |
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Number of miRNA genes |
420 |
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Mean length of miRNA genes |
122.58 bp |
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miRNA genes share in genome |
0.01% |
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Number of rRNA fragments |
478 |
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Mean length of rRNA fragments |
178.52 bp |
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rRNA fragments share in genome |
0.02% |
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Number of tRNA genes |
684 |
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Mean length of tRNA genes |
75.04 bp |
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tRNA genes share in genome |
0.01% |
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Number of snRNA genes |
647 |
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Mean length of snRNA genes |
118.26 bp |
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snRNA genes share in genome |
0.01% |
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Publication
Varshney et al. 2013 - Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
Download
C. arietinum CDC Frontier, Kabuli Type, Genome Assembly v1.0 Files:
Please see the PCD Data Repository, or click on links below.
Homology Analysis Results:
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