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Genome Overview
| Analysis Name | Cicer arietinum CDC Frontier genome v1.0 |
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| Method | whole genome shotgun sequencing, Illumina (Assembly with SOAPdenovo) |
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| Source | CDC Frontier, kabuli type |
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| Date performed | 2013-01-01 |
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About the assembly
A kabuli chickpea genome containing an estimated 28,269 genes. Assembly statistics (Varshney et al. 2013):
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All scaffold ( ≥ 1K) |
Scaffold ≥ 2K |
| Assembly features |
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| Number of scaffolds |
7,163 |
3,659 |
| Total span |
532.29 Mb |
527.50 Mb |
| N50 (scaffolds) |
39.99 Mb |
39.99 Mb |
| Longest scaffold |
59.46 Mb |
59.46 Mb |
| Number of contigs |
62,619 |
56,440 |
| Longest contig |
258.19 kb |
258.19 kb |
| N50 (contigs) |
23.54 kb |
23.69 kb |
| GC content |
30.78% |
30.76% |
| Gene models |
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| Number of gene models |
28,269 |
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| Number of gene models (without transposable elements) |
28,255 |
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| Mean transcript length |
3,055.39 |
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| Mean coding sequence length |
1,166.44 bp |
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| Mean number of exons per gene |
4.93 |
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| Mean exon length |
236.51 bp |
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| Mean intron length |
480.43 bp |
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| Number of genes annotated |
25,365 (89.73%) |
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| Number of genes unannotated |
2,904 (10.27%) |
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| Non-protein coding genes |
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| Number of miRNA genes |
420 |
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| Mean length of miRNA genes |
122.58 bp |
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| miRNA genes share in genome |
0.01% |
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| Number of rRNA fragments |
478 |
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| Mean length of rRNA fragments |
178.52 bp |
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| rRNA fragments share in genome |
0.02% |
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| Number of tRNA genes |
684 |
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| Mean length of tRNA genes |
75.04 bp |
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| tRNA genes share in genome |
0.01% |
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| Number of snRNA genes |
647 |
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| Mean length of snRNA genes |
118.26 bp |
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| snRNA genes share in genome |
0.01% |
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Publication
Varshney et al. 2013 - Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
Download
C. arietinum CDC Frontier, Kabuli Type, Genome Assembly v1.0 Files:
Please see the PCD Data Repository, or click on links below.
Homology Analysis Results:
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