Psat4g002360.1

Transcript Overview
NamePsat4g002360.1
Unique NamePsat4g002360.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length1924
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:2474038..2475961 +Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:2474038..2475961 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsL045Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caipsL778Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL617Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR354Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR367Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR377Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpsL068Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL096Cajanus cajan Asha genome v1.0Cajanus cajan
anpsL0206Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pszwsR357Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR396Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR307Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR383Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR261Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR302Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvssR360Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvssR361Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR296Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsL622Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL140Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL244Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL619Cicer arietinum
carpsL629Cicer arietinum
ccapsL201Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL713Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvumR287Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR291Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR401Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR329Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR279Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR284Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR363Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR380Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR368Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.05G075300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014661539.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.1g444440.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_26428Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.05G094400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_27160Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_05G00777.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.003G086300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g002360Psat4g002360_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002360.1Psat4g002360.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g002360.1_Ps_Cameor_v1aPsat4g002360.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002360.1.five_prime_utr1Psat4g002360.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002360.1.exon1Psat4g002360.1.exon1_Ps_Cameor_v1aPisum sativumexon
Psat4g002360.1.exon2Psat4g002360.1.exon2_Ps_Cameor_v1aPisum sativumexon
Psat4g002360.1.exon3Psat4g002360.1.exon3_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002360.1.cds1Psat4g002360.1.cds1_Ps_Cameor_v1aPisum sativumCDS
Psat4g002360.1.cds2Psat4g002360.1.cds2_Ps_Cameor_v1aPisum sativumCDS
Psat4g002360.1.cds3Psat4g002360.1.cds3_Ps_Cameor_v1aPisum sativumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002360.1.three_prime_utr1Psat4g002360.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Psat4g002360.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..135
IPR036163Heavy metal-associated domain superfamilySUPERFAMILY55008HMA, heavy metal-associated domaincoord: 9..71

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g002360.1_Ps_Cameor_v1a ID=Psat4g002360.1_Ps_Cameor_v1a; Name=Psat4g002360.1; organism=Pisum sativum; type=mRNA; length=1924bp
AAAGATAAAAAATAATATATTTATAAAGATGAATGAATTACAGTATGTGG
ATATATTTAAACGTTTTTGAAAATTTAAATTGAATAGGAACATCCATAAA
TGAAAGTCCAAACAGGAAACCGTGTGAATGAAGCTATCACATACGATGAA
TACGCTACAGCTGCATTGAAGAGTGACTACTAGAGTTGGCAACCTATCAC
TGTAATAAACCATCAAGCACCGGCCGCGCCAAACACTCTCCCACCCTTTT
AGCTAACGACAATCTTGACGTGATTCAACCTCCTAATACCACGTGTAACC
TTTTCATTCCTCATACTTTTTCAGCCTCTTGCGTTCTTAAGCTTCAACTT
TCTTCCCCCTTTTCCTCTGTTTCATCACTACTTCAGAATTTTGCTTCTCT
TCCTCAGATCCAATTCTAGAATATTCCACACCCATGGGAGAAAAGGAAAA
GGTATCAAATTTTAATCTCATTTTCTTCTTCTTTTTTATTAGTAATAGTT
TTGATGGATCATTCTCTTGATCACTTTTTGATTCAGGTAACCACCATAAT
GAAACTCAAAGTTGATCTTCAGTGCAATAAATGCTACAAAAAAGTCAAGA
AAGTTCTCTGCAAATTCCCTCGTTAGTCTCTTCTTTCATCATAGATTAAG
AAACTAATTCAATTTTATTATTATTGATGTTTTGTTTTGTTTGGTGTTTG
AAATATTTGTGAACAAGAAATTCAAGACACGGTGTTTGATGAGAAGAACA
ACTTCGTAATAATCAAAGTGGTTTGTTGTAGCCCTGAGAAGATCAGAGAC
AAGATTTGTTGCAAAGGGTGTGGTGTCATCAAAAGCATAGAAATTCTAGA
ACCTCCCAAACCCAAACCTAAAGAACCAGAAAAACCCAAGGAGCCCGTCA
AGCCTAAAGAGCCTGAAAAGCCCAAAGAGCCAGAAAAACCCAAACAACCA
GAAAAGCCAAAAGAACCTGAGAAACCAAAAGAGCCTGAAAAACCCAAGGA
GCCTGAGAAGCCAAAAGAATTGCCTCCTCCACCGCCGGGGCCCAAGCCCG
AGCCGCCAAAAGAACCTGCAAAACCACCACCGCAGCCGGAGTACATACCG
GGACCGCCACCGTCGATTCCGGTATGTCCTCCGCAGATGGTGGTTCCGAT
TGGGGTATGTTGTGGATCATGCTATGAAGGTCGGGAAGGTGGGCCATGTT
TTCAAGGTTACGGTGGTGGGCCACCACAAGTGAGTTGTTACGATGGGTAC
TACGGAAGACCGATTTATGATAGTTACGGTGGTGGCAGACCTTGTTACGT
GAGTCGTTGTGATGAATATTTATGTGAAGAAAATGCATCTGGTTGCACAA
TTATGTGATGATCTCATTTTCCAAATATGTCACTAGTGGCCAACTGTTGG
TTATCCGTGTAACTGTCACGACACTACCTAATATTTGTCATAGGTGGTTC
ATTTTCATCATCAAAATCATGGAGTAGTTTTTGCTTTGGTACATTAGTAG
TACACGTTAATAAAGGGATTTGGCAGAAAGTAATTGTATACGATGGAGTT
GGAGGGGATTATATATAGAATAAATAAACGCATTCTATATACTAATGTTG
TTTTTTAATGTGCAAATTGATTGAAAAATGGGTTTATTTCTTTTACTAAA
AAGGGAGGGGAGAAATTATAGAAAACTAATGGAAAGAAAAGGAGAAAATG
CTCCTTATATTTTATCCACTTATTTCTTGCATGCTTTGCTATAAATTTCA
TTCTCATGTTTCATTTCAAATCATCACCTTCGTATTAACACTTCTATAAC
AACAATATGGTGAAATCCTTTTGAATGAAGAAAACCAAAAGAGAGTTTAG
TCATCTTTGTTAGTGAGTTTGTAATAATAATTATTTTTTTAGTTATTCAT
TTACAATAAATATATTCTTGGTCC
back to top

protein sequence of Psat4g002360.1_Ps_Cameor_v1a

>Psat4g002360.1_Ps_Cameor_v1a ID=Psat4g002360.1_Ps_Cameor_v1a; Name=Psat4g002360.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=248bp
MGEKEKVTTIMKLKVDLQCNKCYKKVKKVLCKFPQIQDTVFDEKNNFVII
KVVCCSPEKIRDKICCKGCGVIKSIEILEPPKPKPKEPEKPKEPVKPKEP
EKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKELPPPPPGPKPEPPKE
PAKPPPQPEYIPGPPPSIPVCPPQMVVPIGVCCGSCYEGREGGPCFQGYG
GGPPQVSCYDGYYGRPIYDSYGGGRPCYVSRCDEYLCEENASGCTIM*
back to top

mRNA from alignment at chr4LG4:2474038..2475961+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g002360.1_Ps_Cameor_v1a ID=Psat4g002360.1_Ps_Cameor_v1a; Name=Psat4g002360.1; organism=Pisum sativum; type=mRNA; length=1924bp; location=Sequence derived from: chr4LG4:2474038..2475961+ (Pisum sativum
AAAGATAAAAAATAATATATTTATAAAGATGAATGAATTACAGTATGTGG
ATATATTTAAACGTTTTTGAAAATTTAAATTGAATAGGAACATCCATAAA
TGAAAGTCCAAACAGGAAACCGTGTGAATGAAGCTATCACATACGATGAA
TACGCTACAGCTGCATTGAAGAGTGACTACTAGAGTTGGCAACCTATCAC
TGTAATAAACCATCAAGCACCGGCCGCGCCAAACACTCTCCCACCCTTTT
AGCTAACGACAATCTTGACGTGATTCAACCTCCTAATACCACGTGTAACC
TTTTCATTCCTCATACTTTTTCAGCCTCTTGCGTTCTTAAGCTTCAACTT
TCTTCCCCCTTTTCCTCTGTTTCATCACTACTTCAGAATTTTGCTTCTCT
TCCTCAGATCCAATTCTAGAATATTCCACACCCATGGGAGAAAAGGAAAA
GGTATCAAATTTTAATCTCATTTTCTTCTTCTTTTTTATTAGTAATAGTT
TTGATGGATCATTCTCTTGATCACTTTTTGATTCAGGTAACCACCATAAT
GAAACTCAAAGTTGATCTTCAGTGCAATAAATGCTACAAAAAAGTCAAGA
AAGTTCTCTGCAAATTCCCTCGTTAGTCTCTTCTTTCATCATAGATTAAG
AAACTAATTCAATTTTATTATTATTGATGTTTTGTTTTGTTTGGTGTTTG
AAATATTTGTGAACAAGAAATTCAAGACACGGTGTTTGATGAGAAGAACA
ACTTCGTAATAATCAAAGTGGTTTGTTGTAGCCCTGAGAAGATCAGAGAC
AAGATTTGTTGCAAAGGGTGTGGTGTCATCAAAAGCATAGAAATTCTAGA
ACCTCCCAAACCCAAACCTAAAGAACCAGAAAAACCCAAGGAGCCCGTCA
AGCCTAAAGAGCCTGAAAAGCCCAAAGAGCCAGAAAAACCCAAACAACCA
GAAAAGCCAAAAGAACCTGAGAAACCAAAAGAGCCTGAAAAACCCAAGGA
GCCTGAGAAGCCAAAAGAATTGCCTCCTCCACCGCCGGGGCCCAAGCCCG
AGCCGCCAAAAGAACCTGCAAAACCACCACCGCAGCCGGAGTACATACCG
GGACCGCCACCGTCGATTCCGGTATGTCCTCCGCAGATGGTGGTTCCGAT
TGGGGTATGTTGTGGATCATGCTATGAAGGTCGGGAAGGTGGGCCATGTT
TTCAAGGTTACGGTGGTGGGCCACCACAAGTGAGTTGTTACGATGGGTAC
TACGGAAGACCGATTTATGATAGTTACGGTGGTGGCAGACCTTGTTACGT
GAGTCGTTGTGATGAATATTTATGTGAAGAAAATGCATCTGGTTGCACAA
TTATGTGATGATCTCATTTTCCAAATATGTCACTAGTGGCCAACTGTTGG
TTATCCGTGTAACTGTCACGACACTACCTAATATTTGTCATAGGTGGTTC
ATTTTCATCATCAAAATCATGGAGTAGTTTTTGCTTTGGTACATTAGTAG
TACACGTTAATAAAGGGATTTGGCAGAAAGTAATTGTATACGATGGAGTT
GGAGGGGATTATATATAGAATAAATAAACGCATTCTATATACTAATGTTG
TTTTTTAATGTGCAAATTGATTGAAAAATGGGTTTATTTCTTTTACTAAA
AAGGGAGGGGAGAAATTATAGAAAACTAATGGAAAGAAAAGGAGAAAATG
CTCCTTATATTTTATCCACTTATTTCTTGCATGCTTTGCTATAAATTTCA
TTCTCATGTTTCATTTCAAATCATCACCTTCGTATTAACACTTCTATAAC
AACAATATGGTGAAATCCTTTTGAATGAAGAAAACCAAAAGAGAGTTTAG
TCATCTTTGTTAGTGAGTTTGTAATAATAATTATTTTTTTAGTTATTCAT
TTACAATAAATATATTCTTGGTCC
back to top

Coding sequence (CDS) from alignment at chr4LG4:2474038..2475961+

>Psat4g002360.1_Ps_Cameor_v1a ID=Psat4g002360.1_Ps_Cameor_v1a; Name=Psat4g002360.1; organism=Pisum sativum; type=CDS; length=1488bp; location=Sequence derived from: chr4LG4:2474038..2475961+ (Pisum sativum
ATGGGAGAAAAGGAAAAGATGGGAGAAAAGGAAAAGGTAACCACCATAAT
GAAACTCAAAGTTGATCTTCAGTGCAATAAATGCTACAAAAAAGTCAAGA
AAGTTCTCTGCAAATTCCCTCGTAACCACCATAATGAAACTCAAAGTTGA
TCTTCAGTGCAATAAATGCTACAAAAAAGTCAAGAAAGTTCTCTGCAAAT
TCCCTCAAATTCAAGACACGGTGTTTGATGAGAAGAACAACTTCGTAATA
ATCAAAGTGGTTTGTTGTAGCCCTGAGAAGATCAGAGACAAGATTTGTTG
CAAAGGGTGTGGTGTCATCAAAAGCATAGAAATTCTAGAACCTCCCAAAC
CCAAACCTAAAGAACCAGAAAAACCCAAGGAGCCCGTCAAGCCTAAAGAG
CCTGAAAAGCCCAAAGAGCCAGAAAAACCCAAACAACCAGAAAAGCCAAA
AGAACCTGAGAAACCAAAAGAGCCTGAAAAACCCAAGGAGCCTGAGAAGC
CAAAAGAATTGCCTCCTCCACCGCCGGGGCCCAAGCCCGAGCCGCCAAAA
GAACCTGCAAAACCACCACCGCAGCCGGAGTACATACCGGGACCGCCACC
GTCGATTCCGGTATGTCCTCCGCAGATGGTGGTTCCGATTGGGGTATGTT
GTGGATCATGCTATGAAGGTCGGGAAGGTGGGCCATGTTTTCAAGGTTAC
GGTGGTGGGCCACCACAAGTGAGTTGTTACGATGGGTACTACGGAAGACC
GATTTATGATAGTTACGGTGGTGGCAGACCTTGTTACGTGAGTCGTTGTG
ATGAATATTTATGTGAAGAAAATGCATCTGGTTGCACAATTATGTGAAAA
TTCAAGACACGGTGTTTGATGAGAAGAACAACTTCGTAATAATCAAAGTG
GTTTGTTGTAGCCCTGAGAAGATCAGAGACAAGATTTGTTGCAAAGGGTG
TGGTGTCATCAAAAGCATAGAAATTCTAGAACCTCCCAAACCCAAACCTA
AAGAACCAGAAAAACCCAAGGAGCCCGTCAAGCCTAAAGAGCCTGAAAAG
CCCAAAGAGCCAGAAAAACCCAAACAACCAGAAAAGCCAAAAGAACCTGA
GAAACCAAAAGAGCCTGAAAAACCCAAGGAGCCTGAGAAGCCAAAAGAAT
TGCCTCCTCCACCGCCGGGGCCCAAGCCCGAGCCGCCAAAAGAACCTGCA
AAACCACCACCGCAGCCGGAGTACATACCGGGACCGCCACCGTCGATTCC
GGTATGTCCTCCGCAGATGGTGGTTCCGATTGGGGTATGTTGTGGATCAT
GCTATGAAGGTCGGGAAGGTGGGCCATGTTTTCAAGGTTACGGTGGTGGG
CCACCACAAGTGAGTTGTTACGATGGGTACTACGGAAGACCGATTTATGA
TAGTTACGGTGGTGGCAGACCTTGTTACGTGAGTCGTTGTGATGAATATT
TATGTGAAGAAAATGCATCTGGTTGCACAATTATGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036163HMA_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport