Psat4g004880.1

Transcript Overview
NamePsat4g004880.1
Unique NamePsat4g004880.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length1004
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:5211106..5212109 -Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:5211106..5212109 -Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspsL06Pisum sativum Cameor genome v1aPisum sativum
caipsL065Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpsL786Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpsL792Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL746Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipsL775Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipsL822Cicer arietinum ICC 4958 genome v2Cicer arietinum
pszwsR284Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR312Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR299Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canpsL049Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpsL617Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carpsL045Cicer arietinum
carpsL619Cicer arietinum
psvvaR323Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR329Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR390Vicia villosa cv. AU Merit genome v1.0Vicia villosa

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004507571.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_21804.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Hedin2.R1.4g241640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058897604.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cr_22174.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Tiffany.R1.4g185320.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Psat04G0011500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g004880Psat4g004880_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g004880.1Psat4g004880.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g004880.1_Ps_Cameor_v1aPsat4g004880.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g004880.1.five_prime_utr1Psat4g004880.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g004880.1.exon1Psat4g004880.1.exon1_Ps_Cameor_v1aPisum sativumexon
Psat4g004880.1.exon2Psat4g004880.1.exon2_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g004880.1.cds1Psat4g004880.1.cds1_Ps_Cameor_v1aPisum sativumCDS
Psat4g004880.1.cds2Psat4g004880.1.cds2_Ps_Cameor_v1aPisum sativumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g004880.1.three_prime_utr1Psat4g004880.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Psat4g004880.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..134

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=mRNA; length=1004bp
TCTGCACCAGCTACTTCATACTTCTTTTTTCATTCCTCTTTCCATTCCAA
AATGGCCACTGTTGAGGTAATAATTCAAATATATATACTCTTTTCTACCT
TGAGTTGTTATTCTAACTCTACATAGCTATAGTTATATGCATTGCATTAA
GTGTCATACAGATACAATTATATGATAAGTTATAACAGTAGTGTTTCATA
GTGATATTGATCTTGCAAATGCACTAAACATTTTCCGTTGGATCAATCAA
AAGTATCGATCCAATGGAATGTAAACAACAAGTTAATGTAGATCTCTCTG
TTTAATTTTCATGATCCAAAGTAACATAAACGTAACACTTGTTGAACATT
GCTGGCTAATGAAAATGGATCTTTCAGGTTGAAACACAGCAAGTAGTACC
AAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCG
AGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCT
GTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAAC
TGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGC
CAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAA
GCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGC
ATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATG
TCACCACAGAAGCATAGACAATTGTTGTCGACATTGATGAGAACTTTTCT
ATTTTATTGTTTGGTTTCTTTTTCCTTTTTTTCATTGATCTTGTTGTGAA
GGTAAGTCTTTGGATATGGCTTTAAGGTTTATTATATTATATAAAGAGTC
ATGGCCATTGAAGTTTGGGGATGATGATAGTTCCAACAAGGTTCAACTAG
CTTGATTATCATATGTATTTCTCCTGGTTTGAATAAATTATATTTACTTT
TTTT
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protein sequence of Psat4g004880.1_Ps_Cameor_v1a

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=135bp
MATVEVETQQVVPNETVEVTKVDETTPASEVLVSEPVTTEQPKEEAVAEE
AVAEAAVEKEAETEVPVEAETTEVAEEAKPEVENPATEKVEEVKEEATTE
EAKETTETESAVASAVVEENKAAETAVEDVTTEA*
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mRNA from alignment at chr4LG4:5211106..5212109-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=mRNA; length=1004bp; location=Sequence derived from: chr4LG4:5211106..5212109- (Pisum sativum
TCTGCACCAGCTACTTCATACTTCTTTTTTCATTCCTCTTTCCATTCCAA
AATGGCCACTGTTGAGGTAATAATTCAAATATATATACTCTTTTCTACCT
TGAGTTGTTATTCTAACTCTACATAGCTATAGTTATATGCATTGCATTAA
GTGTCATACAGATACAATTATATGATAAGTTATAACAGTAGTGTTTCATA
GTGATATTGATCTTGCAAATGCACTAAACATTTTCCGTTGGATCAATCAA
AAGTATCGATCCAATGGAATGTAAACAACAAGTTAATGTAGATCTCTCTG
TTTAATTTTCATGATCCAAAGTAACATAAACGTAACACTTGTTGAACATT
GCTGGCTAATGAAAATGGATCTTTCAGGTTGAAACACAGCAAGTAGTACC
AAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCG
AGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCT
GTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAAC
TGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGC
CAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAA
GCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGC
ATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATG
TCACCACAGAAGCATAGACAATTGTTGTCGACATTGATGAGAACTTTTCT
ATTTTATTGTTTGGTTTCTTTTTCCTTTTTTTCATTGATCTTGTTGTGAA
GGTAAGTCTTTGGATATGGCTTTAAGGTTTATTATATTATATAAAGAGTC
ATGGCCATTGAAGTTTGGGGATGATGATAGTTCCAACAAGGTTCAACTAG
CTTGATTATCATATGTATTTCTCCTGGTTTGAATAAATTATATTTACTTT
TTTT
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Coding sequence (CDS) from alignment at chr4LG4:5211106..5212109-

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=CDS; length=810bp; location=Sequence derived from: chr4LG4:5211106..5212109- (Pisum sativum
ATGGCCACTGTTGAGATGGCCACTGTTGAGGTTGAAACACAGCAAGTAGT
ACCAAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCT
CCGAGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAG
GCTGTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGA
AACTGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCA
AGCCAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAG
GAAGCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGT
AGCATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAG
ATGTCACCACAGAAGCATAGGTTGAAACACAGCAAGTAGTACCAAATGAA
ACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCGAGGTTCT
TGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCTGTTGCAG
AAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAACTGAAGTA
CCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGCCAGAGGT
AGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAAGCAACAA
CTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGCATCAGCA
GTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATGTCACCAC
AGAAGCATAG
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