Psat4g004880.1

Transcript Overview


Name	Psat4g004880.1
Unique Name	Psat4g004880.1_Ps_Cameor_v1a
Type	mRNA
Organism	Pisum sativum (pea)
Sequence length	1004

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4LG4	supercontig	chr4LG4:5211106..5212109 -	Pisum sativum Cameor genome v1a	n/a
chr4LG4	supercontig	chr4LG4:5211106..5212109 -	Pisum sativum Cameor genome v1a	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan: P. sativum Cameor genome v1a	2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot	2019-09-12
Pisum sativum Cameor genome v1a	2019-09-06

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
pspsL06	Pisum sativum Cameor genome v1a	Pisum sativum
caipsL065	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
crpsL786	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crpsL792	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
caipsL746	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caipsL775	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caipsL822	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
pszwsR284	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pszwsR306	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pstifR307	Vicia faba cv. Tiffany genome v1.0	Vicia faba
pstifR312	Vicia faba cv. Tiffany genome v1.0	Vicia faba
psvfhR299	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canpsL049	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canpsL617	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
carpsL045		Cicer arietinum
carpsL619		Cicer arietinum
psvvaR323	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvvaR329	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvvaR390	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa

Orthologs


Gene/Transcript	Assembly	Species
rna-XM_004507571.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Ca_21804.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vfaba.Hedin2.R1.4g241640.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
XM_058897604.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Cr_22174.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vfaba.Tiffany.R1.4g185320.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Psat04G0011500-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Psat4g004880	Psat4g004880_Ps_Cameor_v1a	Pisum sativum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g004880.1	Psat4g004880.1_Ps_Cameor_v1a-protein	Pisum sativum	polypeptide
Psat4g004880.1_Ps_Cameor_v1a	Psat4g004880.1_Ps_Cameor_v1a	Pisum sativum	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g004880.1.five_prime_utr1	Psat4g004880.1.five_prime_utr1_Ps_Cameor_v1a	Pisum sativum	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g004880.1.exon1	Psat4g004880.1.exon1_Ps_Cameor_v1a	Pisum sativum	exon
Psat4g004880.1.exon2	Psat4g004880.1.exon2_Ps_Cameor_v1a	Pisum sativum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g004880.1.cds1	Psat4g004880.1.cds1_Ps_Cameor_v1a	Pisum sativum	CDS
Psat4g004880.1.cds2	Psat4g004880.1.cds2_Ps_Cameor_v1a	Pisum sativum	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g004880.1.three_prime_utr1	Psat4g004880.1.three_prime_utr1_Ps_Cameor_v1a	Pisum sativum	three_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Psat4g004880.1 vs.

BLAST of Psat4g004880.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..134

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4LG4:5211106..5212109-
coding sequence from alignment at chr4LG4:5211106..5212109-

mRNA sequence

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=mRNA; length=1004bp
TCTGCACCAGCTACTTCATACTTCTTTTTTCATTCCTCTTTCCATTCCAA
AATGGCCACTGTTGAGGTAATAATTCAAATATATATACTCTTTTCTACCT
TGAGTTGTTATTCTAACTCTACATAGCTATAGTTATATGCATTGCATTAA
GTGTCATACAGATACAATTATATGATAAGTTATAACAGTAGTGTTTCATA
GTGATATTGATCTTGCAAATGCACTAAACATTTTCCGTTGGATCAATCAA
AAGTATCGATCCAATGGAATGTAAACAACAAGTTAATGTAGATCTCTCTG
TTTAATTTTCATGATCCAAAGTAACATAAACGTAACACTTGTTGAACATT
GCTGGCTAATGAAAATGGATCTTTCAGGTTGAAACACAGCAAGTAGTACC
AAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCG
AGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCT
GTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAAC
TGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGC
CAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAA
GCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGC
ATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATG
TCACCACAGAAGCATAGACAATTGTTGTCGACATTGATGAGAACTTTTCT
ATTTTATTGTTTGGTTTCTTTTTCCTTTTTTTCATTGATCTTGTTGTGAA
GGTAAGTCTTTGGATATGGCTTTAAGGTTTATTATATTATATAAAGAGTC
ATGGCCATTGAAGTTTGGGGATGATGATAGTTCCAACAAGGTTCAACTAG
CTTGATTATCATATGTATTTCTCCTGGTTTGAATAAATTATATTTACTTT
TTTT

protein sequence of Psat4g004880.1_Ps_Cameor_v1a

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=135bp
MATVEVETQQVVPNETVEVTKVDETTPASEVLVSEPVTTEQPKEEAVAEE
AVAEAAVEKEAETEVPVEAETTEVAEEAKPEVENPATEKVEEVKEEATTE
EAKETTETESAVASAVVEENKAAETAVEDVTTEA*

mRNA from alignment at chr4LG4:5211106..5212109-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=mRNA; length=1004bp; location=Sequence derived from: chr4LG4:5211106..5212109- (Pisum sativum
TCTGCACCAGCTACTTCATACTTCTTTTTTCATTCCTCTTTCCATTCCAA
AATGGCCACTGTTGAGGTAATAATTCAAATATATATACTCTTTTCTACCT
TGAGTTGTTATTCTAACTCTACATAGCTATAGTTATATGCATTGCATTAA
GTGTCATACAGATACAATTATATGATAAGTTATAACAGTAGTGTTTCATA
GTGATATTGATCTTGCAAATGCACTAAACATTTTCCGTTGGATCAATCAA
AAGTATCGATCCAATGGAATGTAAACAACAAGTTAATGTAGATCTCTCTG
TTTAATTTTCATGATCCAAAGTAACATAAACGTAACACTTGTTGAACATT
GCTGGCTAATGAAAATGGATCTTTCAGGTTGAAACACAGCAAGTAGTACC
AAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCG
AGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCT
GTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAAC
TGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGC
CAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAA
GCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGC
ATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATG
TCACCACAGAAGCATAGACAATTGTTGTCGACATTGATGAGAACTTTTCT
ATTTTATTGTTTGGTTTCTTTTTCCTTTTTTTCATTGATCTTGTTGTGAA
GGTAAGTCTTTGGATATGGCTTTAAGGTTTATTATATTATATAAAGAGTC
ATGGCCATTGAAGTTTGGGGATGATGATAGTTCCAACAAGGTTCAACTAG
CTTGATTATCATATGTATTTCTCCTGGTTTGAATAAATTATATTTACTTT
TTTT

Coding sequence (CDS) from alignment at chr4LG4:5211106..5212109-

>Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=CDS; length=810bp; location=Sequence derived from: chr4LG4:5211106..5212109- (Pisum sativum
ATGGCCACTGTTGAGATGGCCACTGTTGAGGTTGAAACACAGCAAGTAGT
ACCAAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCT
CCGAGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAG
GCTGTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGA
AACTGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCA
AGCCAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAG
GAAGCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGT
AGCATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAG
ATGTCACCACAGAAGCATAGGTTGAAACACAGCAAGTAGTACCAAATGAA
ACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCGAGGTTCT
TGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCTGTTGCAG
AAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAACTGAAGTA
CCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGCCAGAGGT
AGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAAGCAACAA
CTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGCATCAGCA
GTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATGTCACCAC
AGAAGCATAG

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